EY720476

Overview
NameEY720476
Unique NameEY720476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720476 vs. ExPASy Swiss-Prot
Match: PGTB2_DICDI (Probable geranylgeranyl transferase type-2 subunit beta OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.058e-27
Identity = 54/107 (50.47%), Postives = 76/107 (71.03%), Query Frame = 1
Query:  115 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNCIL 435
            L  DKHV+YI+ +  KKDSFE  V EH+R+NG YWGL++L +L  LD +D+ +VI W+L CQ  +GGF GN  HD H+L TLSAVQ+L  +D +D +D + V + ++
Sbjct:   22 LLIDKHVEYIVKLGSKKDSFEYWVTEHIRMNGMYWGLSSLYLLKSLDKLDKNEVIQWLLSCQKSNGGFGGNTSHDDHLLSTLSAVQILIQYDALDKIDINSVVDYVV 128          
BLAST of EY720476 vs. ExPASy Swiss-Prot
Match: PGTB2_HUMAN (Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens GN=RABGGTB PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.442e-26
Identity = 49/102 (48.04%), Postives = 76/102 (74.51%), Query Frame = 1
Query:  115 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKV 420
            L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++++I  CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV
Sbjct:   18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILAFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDVNKV 119          
BLAST of EY720476 vs. ExPASy Swiss-Prot
Match: PGTB2_BOVIN (Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus GN=RABGGTB PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.495e-26
Identity = 49/102 (48.04%), Postives = 76/102 (74.51%), Query Frame = 1
Query:  115 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKV 420
            L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++++I  CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV
Sbjct:   18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILTFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDINKV 119          
BLAST of EY720476 vs. ExPASy Swiss-Prot
Match: PGTB2_MOUSE (Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus GN=Rabggtb PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.668e-26
Identity = 50/102 (49.02%), Postives = 74/102 (72.55%), Query Frame = 1
Query:  115 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKV 420
            L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++ +I  CQ E GG + +IGHDPH+LYTLSAVQ+L L+D V +++ DKV
Sbjct:   26 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNREEILVFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDSVHVINVDKV 127          
BLAST of EY720476 vs. ExPASy Swiss-Prot
Match: PGTB2_RAT (Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus GN=Rabggtb PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.001e-25
Identity = 49/102 (48.04%), Postives = 75/102 (73.53%), Query Frame = 1
Query:  115 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKV 420
            L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I  CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV
Sbjct:   18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKV 119          
BLAST of EY720476 vs. ExPASy Swiss-Prot
Match: PGTB2_YEAST (Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces cerevisiae GN=BET2 PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 1.267e-20
Identity = 50/102 (49.02%), Postives = 70/102 (68.63%), Query Frame = 1
Query:  115 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDES-GGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADK 417
            L  +KH++YI S++ KK +FE  + EHLRLNG YWGLT L +L   +   +E+VIS++L C D+  G FA    HD H+L TLSAVQ+LA +D +D+L  D+
Sbjct:    7 LLKEKHIRYIESLDTKKHNFEYWLTEHLRLNGIYWGLTALCVLDSPETFVKEEVISFVLSCWDDKYGAFAPFPRHDAHLLTTLSAVQILATYDALDVLGKDR 108          
BLAST of EY720476 vs. ExPASy Swiss-Prot
Match: PGTB2_SCHPO (Geranylgeranyl transferase type-2 subunit beta OS=Schizosaccharomyces pombe GN=ptb1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.951e-19
Identity = 43/110 (39.09%), Postives = 68/110 (61.82%), Query Frame = 1
Query:  106 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNCIL 435
            M  L  DKH+ Y+  +  + D  +  + EHL ++  YW   +  +L K D +D+E ++S++L C  ESGGFA   GHD H+  T+ AVQVLA+ D + ++D DKV++ I+
Sbjct:    1 MAVLLRDKHISYLHDIGNRTDELDFWLKEHLHVSAIYWSCMSFWLLKKKDQIDKERIVSFLLSCLTESGGFACYPGHDDHITNTVYAVQVLAMLDSLHVVDKDKVASYII 110          
BLAST of EY720476 vs. ExPASy Swiss-Prot
Match: GGTB2_CAEEL (Probable geranylgeranyl transferase type-2 subunit beta OS=Caenorhabditis elegans GN=ggtb-1 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 9.079e-19
Identity = 39/107 (36.45%), Postives = 69/107 (64.49%), Query Frame = 1
Query:  112 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNCI 432
            EL  D H  +I   EK K+S+  ++ EHLR++G YW +  +D+  +L+ +  E++++++L C++  GG+    GHD H+L+TL AVQ L +F+ ++  DAD +S  +
Sbjct:   23 ELLKDLHANFINQYEKNKNSYHYIMAEHLRVSGIYWCVNAMDLSKQLERMSTEEIVNYVLGCRNTDGGYGPAPGHDSHLLHTLCAVQTLIIFNSIEKADADTISEYV 129          
BLAST of EY720476 vs. ExPASy Swiss-Prot
Match: PGTB2_CANAL (Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans GN=BET2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.508e-16
Identity = 42/90 (46.67%), Postives = 62/90 (68.89%), Query Frame = 1
Query:  127 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKC-QDESGGFAGNIGHDPHVLYTLSAVQVLALFDK 393
            KHV+YI+  E  + SFE  + EHLR+NG YWG+T L  + +L A+ ++DVI +I+ C  D++G F     HD H+L TLSA+QVL ++D+
Sbjct:   17 KHVQYIVEQESHR-SFEYWLSEHLRMNGLYWGVTALITMNELSALAQQDVIDYIMLCWDDKTGAFGSFPKHDGHILSTLSALQVLKIYDQ 105          
The following BLAST results are available for this feature:
BLAST of EY720476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PGTB2_DICDI9.058e-2750.47Probable geranylgeranyl transferase type-2 subunit... [more]
PGTB2_HUMAN3.442e-2648.04Geranylgeranyl transferase type-2 subunit beta OS=... [more]
PGTB2_BOVIN4.495e-2648.04Geranylgeranyl transferase type-2 subunit beta OS=... [more]
PGTB2_MOUSE7.668e-2649.02Geranylgeranyl transferase type-2 subunit beta OS=... [more]
PGTB2_RAT1.001e-2548.04Geranylgeranyl transferase type-2 subunit beta OS=... [more]
PGTB2_YEAST1.267e-2049.02Geranylgeranyl transferase type-2 subunit beta OS=... [more]
PGTB2_SCHPO6.951e-1939.09Geranylgeranyl transferase type-2 subunit beta OS=... [more]
GGTB2_CAEEL9.079e-1936.45Probable geranylgeranyl transferase type-2 subunit... [more]
PGTB2_CANAL5.508e-1646.67Geranylgeranyl transferase type-2 subunit beta OS=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-010-A05-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720476 ID=EY720476; Name=EY720476; organism=Citrus sinensis; type=EST; length=861bp
CACGCGTCCGGTAAAACAAAAATTAGTTTATGTCGTCATGTTTTGCAGTT
CTCATTTGCTGTTGTGAAGCCGCTGCCGCTGACATCACTGCTGCTGCATT
TGGAGATGGGAGAGCTGGCTGCAGATAAACATGTGAAATACATTATTTCA
GTTGAGAAGAAAAAGGATAGTTTTGAATCTGTGGTGATGGAACATTTGAG
ATTGAATGGGGCATATTGGGGGCTGACGACCCTCGATATTTTAGGAAAGC
TTGATGCTGTAGATGAAGAAGATGTTATTTCATGGATCTTGAAGTGTCAG
GATGAATCTGGTGGTTTTGCTGGTAATATTGGACATGATCCACATGTGTT
GTATACCCTCAGCGCCGTGCAAGTTTTGGCCCTTTTTGATAAGGTAGATA
TTCTTGATGCCGATAAGGTGTCAAATTGTATCCTTATTACTTTGTCAAAT
TATTGGTAGGGGATTCGTCAACCATTCAATATAAAGATAATGCTTTGTTT
CTTATAAGATTCACAGAAGTAACAACTTTTTTTATGACTATAATGATTTT
GTTTTCACATATATGAAATTTCACTTGACTAAAGAGTCTGATTTCTGTAA
TTTTATAATTTGTATGTTTTTGGTAACTCCAATACCANTAGTAAACAGGC
TAACACANTAGCTGCATTAGATGTGAAGTTTTTTTTTTGGTATAAAACAT
TGGCACTTTAAGCATTCTTGTGGAACTTAACCTTTGAGTTAGATATTGTG
GGGCTGCCAAATGAAAATGGGTCCTTTTCTGGAGACATATGGGGGGAAAT
TGGATACCCGGTAAATTTCCTGGGATCCGCAATATCTACAGCTTGTGCTT
GGGCTGAAATA
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