EY661566

Overview
NameEY661566
Unique NameEY661566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661566 vs. ExPASy Swiss-Prot
Match: AP1S2_DICDI (AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum GN=ap1s2 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.493e-58
Identity = 101/140 (72.14%), Postives = 125/140 (89.29%), Query Frame = 1
Query:   19 FVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLAE 438
            F+LL+SRQGK RLTKWYSP+T KE+S+  RE+  ++L R PKLCNF+EW+ YK+++KRYASLYF +C D+EDNEL +LEIIHH+VEILDRYFG+VCELDLIFNFHKAYYILDE+++AGELQE+SKKTV RLI+ QD+L E
Sbjct:    5 FLLLLSRQGKTRLTKWYSPFTNKEKSRFTREIGNMVLNRPPKLCNFLEWKEYKIIFKRYASLYFVVCCDREDNELIVLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDELIMAGELQETSKKTVLRLISQQDTLLE 144          
BLAST of EY661566 vs. ExPASy Swiss-Prot
Match: AP1S2_MOUSE (AP-1 complex subunit sigma-2 OS=Mus musculus GN=Ap1s2 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 6.717e-51
Identity = 93/146 (63.70%), Postives = 114/146 (78.08%), Query Frame = 1
Query:   13 IQFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLAETAKE 450
            +QF+LL SRQGK+RL KWY P + KE+ K+ REL   +L R PK+C+F+EWR  K+VYKRYASLYFC  I+ +DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ GE+QE+SKK V + I   D L E AKE
Sbjct:    1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQEDAKE 146          
BLAST of EY661566 vs. ExPASy Swiss-Prot
Match: AP1S2_BOVIN (AP-1 complex subunit sigma-2 OS=Bos taurus GN=AP1S2 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 6.717e-51
Identity = 93/146 (63.70%), Postives = 114/146 (78.08%), Query Frame = 1
Query:   13 IQFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLAETAKE 450
            +QF+LL SRQGK+RL KWY P + KE+ K+ REL   +L R PK+C+F+EWR  K+VYKRYASLYFC  I+ +DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ GE+QE+SKK V + I   D L E AKE
Sbjct:    1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQEDAKE 146          
BLAST of EY661566 vs. ExPASy Swiss-Prot
Match: AP1S2_HUMAN (AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP1S2 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.954e-50
Identity = 93/154 (60.39%), Postives = 116/154 (75.32%), Query Frame = 1
Query:   13 IQFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLAETAKEQASSISNI 474
            +QF+LL SRQGK+RL KWY P + KE+ K+ REL   +L R PK+C+F+EWR  K+VYKRYASLYFC  I+ +DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ GE+QE+SKK V + I   D L E A+   S +  I
Sbjct:    1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQEEAETPRSVLEEI 154          
BLAST of EY661566 vs. ExPASy Swiss-Prot
Match: AP1S1_SCHPO (AP-1 complex subunit sigma-1 OS=Schizosaccharomyces pombe GN=SPAP27G11.06c PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 3.686e-49
Identity = 91/160 (56.88%), Postives = 126/160 (78.75%), Query Frame = 1
Query:   13 IQFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLAETAKEQASSISNIIARATK 492
            I+F LL+SRQGKVRL KW++  + KER+K+IR++S +++TR PK+CNFVE++G K+VY+RYASL+F   I+Q+DNEL ILE+IH +VE LD+YFG+VCELDLIFNF KAYY+++E+L+AGELQESSK  V   + A D+ +E A  Q  S+  ++    K
Sbjct:    3 IKFFLLVSRQGKVRLAKWFNTLSIKERAKIIRDVSSLVITRKPKMCNFVEYKGEKIVYRRYASLFFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVMEELLLAGELQESSKTNVLSAVLAGDAESE-ADAQQDSLQKLVGSVKK 161          
BLAST of EY661566 vs. ExPASy Swiss-Prot
Match: AP1S1_MOUSE (AP-1 complex subunit sigma-1A OS=Mus musculus GN=Ap1s1 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 4.075e-48
Identity = 89/154 (57.79%), Postives = 117/154 (75.97%), Query Frame = 1
Query:   13 IQFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLAETAKEQASSISNI 474
            ++F+LL SRQGK+RL KWY   + KER K++REL  V+L R PK+C+F+EWR  KVVYKRYASLYFC  I+ +DNEL  LE+IH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G++Q++SKK+V + I   D L E  +   S +  +
Sbjct:    2 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEM 155          
BLAST of EY661566 vs. ExPASy Swiss-Prot
Match: AP1S1_HUMAN (AP-1 complex subunit sigma-1A OS=Homo sapiens GN=AP1S1 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 4.075e-48
Identity = 89/154 (57.79%), Postives = 117/154 (75.97%), Query Frame = 1
Query:   13 IQFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLAETAKEQASSISNI 474
            ++F+LL SRQGK+RL KWY   + KER K++REL  V+L R PK+C+F+EWR  KVVYKRYASLYFC  I+ +DNEL  LE+IH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G++Q++SKK+V + I   D L E  +   S +  +
Sbjct:    2 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEM 155          
BLAST of EY661566 vs. ExPASy Swiss-Prot
Match: AP1S1_BOVIN (AP-1 complex subunit sigma-1A OS=Bos taurus GN=AP1S1 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 4.075e-48
Identity = 89/154 (57.79%), Postives = 117/154 (75.97%), Query Frame = 1
Query:   13 IQFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLAETAKEQASSISNI 474
            ++F+LL SRQGK+RL KWY   + KER K++REL  V+L R PK+C+F+EWR  KVVYKRYASLYFC  I+ +DNEL  LE+IH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G++Q++SKK+V + I   D L E  +   S +  +
Sbjct:    1 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEM 154          
BLAST of EY661566 vs. ExPASy Swiss-Prot
Match: AP1S3_MOUSE (AP-1 complex subunit sigma-3 OS=Mus musculus GN=Ap1s3 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 7.685e-47
Identity = 84/146 (57.53%), Postives = 111/146 (76.03%), Query Frame = 1
Query:   13 IQFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLAETAKE 450
            I F+LL SRQGK+RL KWY+    KER K+ R++   +L+RG +  +F++W+  K+VYKRYASLYFC  I+ +DNEL  LEI+H YVE+LD+YFG+VCELD+IFNF KAY+ILDE +I GE+QE+SKKT  + I   D L ET +E
Sbjct:    2 IHFILLFSRQGKLRLQKWYTTLPDKERKKITRDIIQTVLSRGHRTSSFIDWKELKLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGGEIQETSKKTAVKAIEDSDMLQETMEE 147          
BLAST of EY661566 vs. ExPASy Swiss-Prot
Match: AP1S3_HUMAN (AP-1 complex subunit sigma-3 OS=Homo sapiens GN=AP1S3 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.110e-45
Identity = 84/144 (58.33%), Postives = 108/144 (75.00%), Query Frame = 1
Query:   13 IQFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLAETA 444
            I F+LL SRQGK+RL KWY     KER K+ RE+  +IL+RG +  +FV+W+  K+VYKRYASLYFC  I+ +DNEL  LEI+H YVE+LD+YFG+VCELD+IFNF KAY+ILDE +I GE+QE+SKK   + I   D L E +
Sbjct:    2 IHFILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSRGHRTSSFVDWKELKLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGGEIQETSKKIAVKAIEDSDMLQEVS 145          
The following BLAST results are available for this feature:
BLAST of EY661566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
AP1S2_DICDI1.493e-5872.14AP-1 complex subunit sigma-2 OS=Dictyostelium disc... [more]
AP1S2_MOUSE6.717e-5163.70AP-1 complex subunit sigma-2 OS=Mus musculus GN=Ap... [more]
AP1S2_BOVIN6.717e-5163.70AP-1 complex subunit sigma-2 OS=Bos taurus GN=AP1S... [more]
AP1S2_HUMAN1.954e-5060.39AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP... [more]
AP1S1_SCHPO3.686e-4956.88AP-1 complex subunit sigma-1 OS=Schizosaccharomyce... [more]
AP1S1_MOUSE4.075e-4857.79AP-1 complex subunit sigma-1A OS=Mus musculus GN=A... [more]
AP1S1_HUMAN4.075e-4857.79AP-1 complex subunit sigma-1A OS=Homo sapiens GN=A... [more]
AP1S1_BOVIN4.075e-4857.79AP-1 complex subunit sigma-1A OS=Bos taurus GN=AP1... [more]
AP1S3_MOUSE7.685e-4757.53AP-1 complex subunit sigma-3 OS=Mus musculus GN=Ap... [more]
AP1S3_HUMAN1.110e-4558.33AP-1 complex subunit sigma-3 OS=Homo sapiens GN=AP... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-034-E11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661566 ID=EY661566; Name=EY661566; organism=Citrus sinensis; type=EST; length=551bp
CCACGCGTCCGGATTCAATTTGTGCTTCTTATTAGTCGACAAGGAAAAGT
AAGGTTGACAAAATGGTATTCTCCTTATACACAGAAGGAAAGAAGTAAGG
TTATCCGTGAGCTAAGTGGTGTGATTCTTACACGAGGACCTAAGCTCTGT
AATTTTGTGGAATGGAGAGGGTACAAGGTTGTCTATAAAAGATATGCTAG
TCTATACTTCTGCATGTGCATTGATCAGGAAGACAATGAGTTAGAGATCC
TTGAAATAATTCATCATTATGTTGAGATTCTTGACAGATACTTTGGCAGT
GTTTGTGAGTTGGACCTCATCTTCAACTTTCACAAGGCTTATTACATATT
GGATGAGATCTTGATTGCTGGCGAACTTCAAGAGTCCAGCAAGAAAACAG
TCGCACGGCTAATAGCTGCACAGGATTCACTGGCGGAGACTGCAAAAGAG
CAAGCTAGTTCAATAAGTAATATAATCGCACGGGCCACAAAGTAGGATGT
ACCAAGTATGTTCGTGTAATATATTGATTGAGTTTGAAGTGATTTGCTGC
C
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