EY660556

Overview
NameEY660556
Unique NameEY660556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660556 vs. ExPASy Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.476e-82
Identity = 160/206 (77.67%), Postives = 171/206 (83.01%), Query Frame = 3
Query:   24 MAATTQASLFAPANFSTTKSSAPRKQS-SSFSVRPLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI*YQFYRVFPNGEAQYLHPKDGVYPEKMNPRKEGVGQNYTPIGKNVSPIEGKFTGKQGHDL 638
            MA  TQASLF PA  S  KSSAP KQS +SFS + LK        I+AMAE +  T   EAPVGFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREG NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGE QYLHPKDGVYPEK+N  ++GVGQN+  IGKN SPIE KFTGKQ +DL
Sbjct:    1 MAMATQASLFTPA-LSAPKSSAPWKQSLASFSPKQLKSTVSAPRPIRAMAE-EAATKEAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204          
BLAST of EY660556 vs. ExPASy Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 4.019e-80
Identity = 156/208 (75.00%), Postives = 167/208 (80.29%), Query Frame = 3
Query:   24 MAATTQASLFAPANFSTTKSSAPRKQSS-SFSV-RPLKHNAPRTNTIKAMAE-GKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI*YQFYRVFPNGEAQYLHPKDGVYPEKMNPRKEGVGQNYTPIGKNVSPIEGKFTGKQGHDL 638
            MA  TQASLF P       ++AP KQS  SFS  + LK     T  I+AMAE     T  K AP GFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGE QYLHPKDGVYPEK+NP +EGVGQN+  IGKN S IE KFTGKQ +D+
Sbjct:    1 MAMATQASLFTPPLSVPKSTTAPWKQSLVSFSTPKQLKSTVSVTRPIRAMAEEAPAATEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208          
BLAST of EY660556 vs. ExPASy Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 6.855e-80
Identity = 157/211 (74.41%), Postives = 170/211 (80.57%), Query Frame = 3
Query:   24 MAATTQASLFAPANFSTTKS---SAPRKQSSSFSV---RPLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI*YQFYRVFPNGEAQYLHPKDGVYPEKMNPRKEGVGQNYTPIGKNVSPIEGKFTGKQGHDL 638
            MA  TQA+LF P+  ST KS   S P KQSS+ S    +P    A  + + K  AE +T     EAP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGE QYLHPKDGVYPEK+NP +EGVGQN+  IGKNVSPIE KFTGKQ +DL
Sbjct:    1 MAMATQATLFTPS-LSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV---EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207          
BLAST of EY660556 vs. ExPASy Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 5.803e-79
Identity = 155/215 (72.09%), Postives = 172/215 (80.00%), Query Frame = 3
Query:   24 MAATTQASLFAPANFSTTKSSAPRKQSS-------SFSVRPL-KHNAPRTNTIKAMAEGKTE--TPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI*YQFYRVFPNGEAQYLHPKDGVYPEKMNPRKEGVGQNYTPIGKNVSPIEGKFTGKQGHDL 638
            MA  TQA+LF+P++ S+ K    R  +S       +F+ +P  +H++ R     A AEGK    T TKEAP GFTPPELDPNTPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFP+GE QYLHPKDGVYPEK+NP ++GVG N   IGKNVSPIE KFTGKQ +DL
Sbjct:    1 MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFASKPASRHHSIRA---AAAAEGKAAAATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212          
BLAST of EY660556 vs. ExPASy Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.438e-77
Identity = 149/204 (73.04%), Postives = 160/204 (78.43%), Query Frame = 3
Query:   30 ATTQASLFAPANFSTTKSSAPRKQSSSFSVRPLKHNAPRTNTIKAMAEGKTETPT-KEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI*YQFYRVFPNGEAQYLHPKDGVYPEKMNPRKEGVGQNYTPIGKNVSPIEGKFTGKQGHDL 638
            AT  A +F+PA  +TT S+  +    S S RP   +  +T       E  +  P  KEAPVGFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGE QYLHPKDGVYPEK NP +EGVG N   IGKNVSPIE KFTGKQ +DL
Sbjct:    2 ATQAAGIFSPA-ITTTTSAVKKLHLFSSSHRPKSLSFTKTAIRAEKTESSSAAPAVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204          
BLAST of EY660556 vs. ExPASy Swiss-Prot
Match: PSAD1_ARATH (Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 3.892e-75
Identity = 146/207 (70.53%), Postives = 154/207 (74.40%), Query Frame = 3
Query:   30 ATTQASLFAPANFSTTKSSAPRKQSSSFSVRP----LKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI*YQFYRVFPNGEAQYLHPKDGVYPEKMNPRKEGVGQNYTPIGKNVSPIEGKFTGKQGHDL 638
            AT  A +F  A  +   S   +    S + RP        A R     + A       TKEAPVGFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGE QYLHPKDGVYPEK NP +EGVG N   IGKNVSPIE KFTGKQ +DL
Sbjct:    2 ATQAAGIFNSAITTAATSGVKKLHFFSTTHRPKSLSFTKTAIRAEKTDSSAAAAAAPATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208          
BLAST of EY660556 vs. ExPASy Swiss-Prot
Match: PSAD_HORVU (Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 9.922e-71
Identity = 142/212 (66.98%), Postives = 154/212 (72.64%), Query Frame = 3
Query:   24 MAATTQASL----FAPANFSTTKSSAPRKQSSSFSVR---PLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI*YQFYRVFPNGEAQYLHPKDGVYPEKMNPRKEGVGQNYTPIGKNVSPIEGKFTGKQGHDL 638
            MA  TQAS        A +S +    P   +   S R   PL   AP T    A        P + AP GF PP+LDP+TPSPIFGGSTGGLLRKAQVEEFYVITW SPKEQ+FEMPTGGAAIMREGPNLLKLARKEQCLALG RLRSKYKI YQFYRVFPNGE QYLHPKDGVYPEK+N  ++GVGQN+  IGKNVSPIE KFTGK   D+
Sbjct:    1 MAMATQASAATRHLITAAWSPSAKPRPATLAMPSSARGPAPLFAAAPDTPAPAA-------PPAEPAPAGFVPPQLDPSTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIAYQFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 205          
BLAST of EY660556 vs. ExPASy Swiss-Prot
Match: PSAD_CHLRE (Photosystem I reaction center subunit II, chloroplastic OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.439e-53
Identity = 109/184 (59.24%), Postives = 135/184 (73.37%), Query Frame = 3
Query:   75 TKSSAPRKQSSSFSVRPLKHNAPRTNTIKAMAEGKTETPTKEAPV-GFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI*YQFYRVFPNGEAQYLHPKDGVYPEKMNPRKEGVGQNYTPIGKNVSPIEGKFTGK 623
            T++ A  + SS  +V   +  A R   ++A AE       K A    +T P L+P+TPSPIFGGSTGGLLRKAQ EEFYVITWE+ KEQIFEMPTGGAAIMR+GPNLLK  +KEQCLAL T+LR+K+K+   FYRVFP+G+ QYLHP DGVYPEK+N  + G  QN   IG+NV+PI+ KF+G+
Sbjct:    7 TQAPAATRASSRVAVAA-RPAARRAVVVRAEAEAAPAAAKKAAEKPAWTVPTLNPDTPSPIFGGSTGGLLRKAQTEEFYVITWEAKKEQIFEMPTGGAAIMRQGPNLLKFGKKEQCLALTTQLRNKFKLTPCFYRVFPDGKVQYLHPADGVYPEKVNAGRVGANQNMRRIGQNVNPIKVKFSGR 189          
BLAST of EY660556 vs. ExPASy Swiss-Prot
Match: PSAD_CYAPA (Photosystem I reaction center subunit II, cyanelle OS=Cyanophora paradoxa GN=psaD PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.650e-47
Identity = 90/146 (61.64%), Postives = 112/146 (76.71%), Query Frame = 3
Query:  201 APVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-*YQFYRVFPNGEAQYLHPKDGVYPEKMNPRKEGVGQNYTPIGKNVSPIEGKFTGKQGHD 635
            AP  F+ P L+ N P+PIFGGSTGGLLRKA+VEEFY ITW    E +FE+PTGGAAIMR G NLL+LARKEQC+ALG +L+ K+KI  Y+ YRV+P+GE Q+LHPKDGV+PEK+NP +  VG N   IG+N  P + KF G++  D
Sbjct:   70 APKPFSVPTLNLNAPTPIFGGSTGGLLRKAEVEEFYSITWTGKSETVFELPTGGAAIMRAGENLLRLARKEQCIALGAQLKDKFKITDYKIYRVYPSGEVQFLHPKDGVFPEKVNPGRVAVGSNKRRIGQNPDPAKLKFKGQETFD 215          
BLAST of EY660556 vs. ExPASy Swiss-Prot
Match: PSAD_GUITH (Photosystem I reaction center subunit II OS=Guillardia theta GN=psaD PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.641e-44
Identity = 87/133 (65.41%), Postives = 105/133 (78.95%), Query Frame = 3
Query:  228 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-*YQFYRVFPNGEAQYLHPKDGVYPEKMNPRKEGVGQNYTPIGKNVSPIEGKFTGK 623
            L+   PSP F GSTGG LR A+ EE Y ITW SPKEQ+FEMPTGGAAIMR+G NLL LARKEQCLALGT++++ +KI  Y+ YR+FP+GE QYLHPKDGV+PEK+NP + GVG     IGKN++P + KFT K
Sbjct:    5 LNLQIPSPTFEGSTGGWLRAAETEEKYAITWTSPKEQVFEMPTGGAAIMRKGENLLYLARKEQCLALGTQVKTSFKITDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRIGVGNVSHSIGKNLNPAQIKFTNK 137          
The following BLAST results are available for this feature:
BLAST of EY660556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_NICSY1.476e-8277.67Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SOLLC4.019e-8075.00Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CUCSA6.855e-8074.41Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SPIOL5.803e-7972.09Photosystem I reaction center subunit II, chloropl... [more]
PSAD2_ARATH2.438e-7773.04Photosystem I reaction center subunit II-2, chloro... [more]
PSAD1_ARATH3.892e-7570.53Photosystem I reaction center subunit II-1, chloro... [more]
PSAD_HORVU9.922e-7166.98Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CHLRE1.439e-5359.24Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CYAPA7.650e-4761.64Photosystem I reaction center subunit II, cyanelle... [more]
PSAD_GUITH4.641e-4465.41Photosystem I reaction center subunit II OS=Guilla... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-023-E02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660556 ID=EY660556; Name=EY660556; organism=Citrus sinensis; type=EST; length=850bp
TTCCCCAACCCACGCGTCCGGCCATGGCCGCAACAACTCAAGCCTCTCTC
TTCGCACCGGCCAACTTCTCCACCACCAAATCCTCTGCGCCGCGGAAGCA
ATCATCATCATTTTCAGTAAGGCCACTAAAACATAATGCCCCACGTACCA
ACACCATCAAGGCCATGGCTGAGGGAAAAACAGAGACACCCACAAAAGAG
GCTCCGGTGGGCTTCACCCCACCAGAACTGGACCCCAACACCCCATCTCC
GATCTTCGGAGGCAGCACCGGCGGGCTGCTGCGGAAGGCTCAGGTGGAAG
AGTTTTATGTGATCACATGGGAGTCTCCTAAGGAGCAAATATTTGAAATG
CCCACTGGGGGTGCGGCCATTATGAGAGAAGGTCCGAATTTGCTGAAGCT
GGCTAGGAAAGAGCAGTGCTTGGCTCTGGGGACAAGGCTGAGGTCCAAGT
ACAAGATTTAATACCAGTTTTACCGAGTGTTTCCCAACGGAGAGGCTCAG
TATTTGCATCCCAAGGATGGTGTTTATCCTGAAAAAATGAACCCCCGGAA
GGAAGGAGTTGGGCAGAATTACACGCCTATTGGTAAGAATGTGAGTCCTA
TTGAGGGCAAGTTTACCGGGAAACAAGGGCATGATCTGCAAATTTAAAAT
GGAAGCTGCTAACCTGACGGGCCTCGGATGAACTGCTCATTAATTGCTGG
GACCCTTAATTGGGTGGAATACGGCGTTTCTTTTCCTAAAAAAAATGAAT
GAAAAAAGAATGGAACCCTGAAACTTTTTAACCATGCAAATCCCCTTTTA
TAGAAAAAAACAACACCACCCTCGCTCGGGCCACAAAAAAGATAAAATGT
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