EY660543

Overview
NameEY660543
Unique NameEY660543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660543 vs. ExPASy Swiss-Prot
Match: PHOT2_ARATH (Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2 PE=1 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 9.148e-68
Identity = 158/302 (52.32%), Postives = 192/302 (63.58%), Query Frame = 3
Query:    9 GPDSLPDHASEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIR-ALSLDTTNKLEEKKKFNLDCALPASAENVNKSTPGRQTPQVGYGGEMSVQEAGRNSRKSGRNSL-MGLKVRSPSLAGKHEPQPSIAPEVFM--TKDLKWTDSWDRAKKEKDIPPRIDLPTTLGRIEENFVXXXXXXXXXXXXFASDSFLELTEYTREENFGEKLPGSSRT*NNQPLSQR-KNAVRNQ 899
            GPD+  +  + KIRD V+NGKSYCGRLLNYKKDGTPFWNLLTVTPIKDD G TIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKAL SITEV+QT++  +S ++ ++S DT  K                 ++    TPGRQT Q          EA ++ R  GR S   G K++S +   +HE    + PE  M  T+ +   DSWD + +E+DI   IDL TTL RIE+NFV            FASDSFLELTEY+REE  G           +Q   Q+ ++A+R+Q
Sbjct:  175 GPDTDKNEVA-KIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALDSITEVVQTIRHRKSQVQESVSNDTMVK----------------PDSSTTPTPGRQTRQ--------SDEASKSFRTPGRVSTPTGSKLKSSN--NRHEDLLRMEPEELMLSTEVIGQRDSWDLSDRERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDQATVQKIRDAIRDQ 449          
BLAST of EY660543 vs. ExPASy Swiss-Prot
Match: PHOT1_ARATH (Phototropin-1 OS=Arabidopsis thaliana GN=PHOT1 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.378e-51
Identity = 122/267 (45.69%), Postives = 158/267 (59.18%), Query Frame = 3
Query:   42 KIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRALSLDTTNKLEEKKKFNLDCALPASAENVNKSTPGRQTPQVGYGGEMSVQEAGRNSRKSGRN---SLMGLKVRSPSLAGKHEP---QPSIAPEVFMTKDLKWTDSWDRAKKEKDIPPRIDLPTTLGRIEENFVXXXXXXXXXXXXFASDSFLELTEYTREENFG 824
            KIR+ +  G +YCGR+LNYKKDGT FWNLLT+ PIKD+SGK +KFIGMQVEVSK+TEG  +KALRPNGL +SLIRYDARQK+ A  S+TE+++ VKR     RALS ++TN      K   D      A  ++++         G G   S+Q       K  R    S MG+K +S SL    +    +     +    +D +  +S D   ++K++   IDL TTL RIE+NFV            FASDSFLELTEY+REE  G
Sbjct:  249 KIRETLAAGNNYCGRILNYKKDGTSFWNLLTIAPIKDESGKVLKFIGMQVEVSKHTEGAKEKALRPNGLPESLIRYDARQKDMATNSVTELVEAVKRP----RALS-ESTNLHPFMTKSESDELPKKPARRMSENVVPSGRRNSGGGRRNSMQRINEIPEKKSRKSSLSFMGIKKKSESLDESIDDGFIEYGEEDDEISDRDER-PESVDDKVRQKEMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILG 509          

HSP 2 Score: 26.9498 bits (58), Expect = 1.378e-51
Identity = 10/16 (62.50%), Postives = 14/16 (87.50%), Query Frame = 1
Query:  811 KKILGKNCQVPQGPET 858
            ++ILG+NC+  QGPET
Sbjct:  505 EEILGRNCRFLQGPET 520          
The following BLAST results are available for this feature:
BLAST of EY660543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PHOT2_ARATH9.148e-6852.32Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2 PE=... [more]
PHOT1_ARATH1.378e-5145.69Phototropin-1 OS=Arabidopsis thaliana GN=PHOT1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-023-C12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660543 ID=EY660543; Name=EY660543; organism=Citrus sinensis; type=EST; length=935bp
GCAGGACCGGTCCGGATTCCTTGCCCGACCACGCGTCCGAGAAAATACGA
GATGCGGTGAGGAACGGGAAGAGTTACTGCGGCAGGCTCTTGAACTACAA
AAAAGATGGTACTCCTTTCTGGAATCTACTCACTGTTACGCCTATCAAGG
ATGATAGTGGTAAAACTATCAAATTCATTGGGATGCAGGTTGAGGTCAGC
AAATACACCGAAGGTGTTAATGACAAGGCACTGCGGCCAAATGGATTGTC
TAAGTCATTGATCCGCTATGATGCTCGTCAGAAGGAAAAGGCTTTAGGTT
CTATCACAGAGGTTATTCAAACTGTGAAACGTTCGCAATCTCACATTCGT
GCTCTAAGTCTTGATACTACCAATAAGCTTGAAGAGAAGAAGAAGTTCAA
TCTTGATTGTGCTCTGCCTGCATCTGCTGAAAATGTAAATAAAAGCACAC
CTGGTAGACAAACTCCTCAGGTTGGTTATGGAGGAGAGATGTCTGTTCAG
GAAGCTGGCAGAAATTCAAGAAAATCAGGGCGCAATTCTTTAATGGGGCT
TAAAGTGAGGTCTCCAAGCCTTGCAGGAAAGCATGAGCCTCAACCAAGTA
TCGCACCGGAGGTTTTCATGACTAAAGACTTAAAATGGACTGACAGTTGG
GACCGTGCAAAAAAGGAGAAGGATATCCCGCCAAGAATCGATCTACCAAC
CACTTTGGGACGCATTGAGGAGAATTTTGTTATCACAGATCCAAGAATTC
CTGATACCCCCATTATTTTTGCCTCTGATAGCTTTCTTGAGTTGACTGAA
TATACACGTGAAGAAAATTTTGGGGAAAAACTGCCAGGTTCCTCAAGGAC
CTGAAACAATCAGCCACTGTCTCAAAGAAAGAATGCTGTCAGAAACCAAG
GGAATTCCGTTCAGTGATTACTACCTAAAAGGGAA
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