EY660542

Overview
NameEY660542
Unique NameEY660542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660542 vs. ExPASy Swiss-Prot
Match: PHOT2_ARATH (Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2 PE=1 SV=2)

HSP 1 Score: 326.635 bits (836), Expect = 1.195e-88
Identity = 186/298 (62.42%), Postives = 214/298 (71.81%), Query Frame = 1
Query:    7 VREIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIR-ALSLDTTNKLEEKKKFNLDCALPASAENVNKSTPGRQTPQVGYGGEMSVQEAGRNSRKSGRNSL-MGLKVRSPSLAGKHEPQPSIAPEVFM--TKDLKWTDSWDRAERERDIRPGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTRGEILGENCKFLSGPETDQALSQRKRCCPR-XREIPV 885
            V +IRD V+NGKSYCGRLLNYKKDGTPFWNLLTVTPIKDD G TIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKAL SITEV+QT++  +S ++ ++S DT  K                 ++    TPGRQT Q          EA ++ R  GR S   G K++S +   +HE    + PE  M  T+ +   DSWD ++RERDIR GIDLATTLERIEKNFVI+DPR+PDNPIIFASDSFLELTEY+R EILG NC+FL GPETDQA  Q+ R   R  REI V
Sbjct:  183 VAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALDSITEVVQTIRHRKSQVQESVSNDTMVK----------------PDSSTTPTPGRQTRQ--------SDEASKSFRTPGRVSTPTGSKLKSSN--NRHEDLLRMEPEELMLSTEVIGQRDSWDLSDRERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDQATVQKIRDAIRDQREITV 454          

HSP 2 Score: 70.0922 bits (170), Expect = 2.016e-11
Identity = 49/182 (26.92%), Postives = 86/182 (47.25%), Query Frame = 1
Query:  331 LDTTNKLEEKKKFNLDCALPASAENVNKSTPGRQTPQV---GYGGEMSVQEAGRNSRKSGRNSLMGLKVRSPSLAGKHEPQPSIAPEVFMTKDLKWTDSWDRAERERDIRPGI--DLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTRGEILGENCKFLSGPETDQALSQRKRCC 861
            L+    L E++  +L+   P+S +  + ST     P +     G      E   +++ + R +  GL    P  +G       ++ EV  +K++    S +    E    P +  +L T L  +++ FV++D   P  PI++AS  F  +T Y+  EI+G NC+FL GP+TD+    + R C
Sbjct:   11 LNDAESLSERR--SLEIFNPSSGKETHGSTSSSSKPPLDGNNKGSSSKWMEFQDSAKITERTAEWGLSAVKPD-SGDDGISFKLSSEVERSKNMSRRSSEESTSSESGAFPRVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDC 189          
BLAST of EY660542 vs. ExPASy Swiss-Prot
Match: PHOT1_ARATH (Phototropin-1 OS=Arabidopsis thaliana GN=PHOT1 PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.794e-68
Identity = 147/279 (52.69%), Postives = 185/279 (66.31%), Query Frame = 1
Query:   13 EIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRALSLDTTNKLEEKKKFNLDCALPASAENVNKSTPGRQTPQVGYGGEMSVQEAGRNSRKSGRN---SLMGLKVRSPSLAGKHEP---QPSIAPEVFMTKDLKWTDSWDRAERERDIRPGIDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTRGEILGENCKFLSGPETD 831
            +IR+ +  G +YCGR+LNYKKDGT FWNLLT+ PIKD+SGK +KFIGMQVEVSK+TEG  +KALRPNGL +SLIRYDARQK+ A  S+TE+++ VKR     RALS ++TN      K   D      A  ++++         G G   S+Q       K  R    S MG+K +S SL    +    +     +    +D +  +S D   R++++R GIDLATTLERIEKNFVITDPR+PDNPIIFASDSFLELTEY+R EILG NC+FL GPETD
Sbjct:  249 KIRETLAAGNNYCGRILNYKKDGTSFWNLLTIAPIKDESGKVLKFIGMQVEVSKHTEGAKEKALRPNGLPESLIRYDARQKDMATNSVTELVEAVKRP----RALS-ESTNLHPFMTKSESDELPKKPARRMSENVVPSGRRNSGGGRRNSMQRINEIPEKKSRKSSLSFMGIKKKSESLDESIDDGFIEYGEEDDEISDRDER-PESVDDKVRQKEMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETD 521          
BLAST of EY660542 vs. ExPASy Swiss-Prot
Match: TLOV1_ARATH (Protein TWIN LOV 1 OS=Arabidopsis thaliana GN=TLP1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.674e-13
Identity = 36/66 (54.55%), Postives = 51/66 (77.27%), Query Frame = 1
Query:  664 LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTRGEILGENCKFLSGPETDQA-LSQRKRC 858
            L  +L RI+++FV+T+P +PD PII+ASD+FL LT Y R E+LG+NC+FLSG +TD + L + K C
Sbjct:  250 LVISLGRIKQSFVLTNPCLPDMPIIYASDAFLTLTGYKRQEVLGQNCRFLSGVDTDSSVLYEMKEC 315          
BLAST of EY660542 vs. ExPASy Swiss-Prot
Match: LOVHK_PSESM (Blue-light-activated protein OS=Pseudomonas syringae pv. tomato GN=PSPTO_2896 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.543e-11
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query:  676 LERIEKNFVITDPRIPDNPIIFASDSFLELTEYTRGEILGENCKFLSGPETDQALSQRKR 855
            +E      ++TDP  PDNPIIF++ +FLE+T YT  EILG NC+FL GP+TD A+ Q  R
Sbjct:   28 VETTRMPMIVTDPNRPDNPIIFSNRAFLEMTGYTAEEILGTNCRFLQGPDTDPAVVQSIR 87          
The following BLAST results are available for this feature:
BLAST of EY660542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PHOT2_ARATH1.195e-8862.42Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2 PE=... [more]
PHOT1_ARATH1.794e-6852.69Phototropin-1 OS=Arabidopsis thaliana GN=PHOT1 PE=... [more]
TLOV1_ARATH3.674e-1354.55Protein TWIN LOV 1 OS=Arabidopsis thaliana GN=TLP1... [more]
LOVHK_PSESM1.543e-1153.33Blue-light-activated protein OS=Pseudomonas syring... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-023-C11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660542 ID=EY660542; Name=EY660542; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGAGAAATACGAGATGCGGTGAGGAACGGGAAGAGTTACTG
CGGCAGGCTCTTGAACTACAAAAAAGATGGTACTCCTTTCTGGAATCTAC
TCACTGTTACGCCTATCAAGGATGATAGTGGTAAAACTATCAAATTCATT
GGGATGCAGGTTGAGGTCAGCAAATACACCGAAGGTGTTAATGACAAGGC
ACTGCGGCCAAATGGATTGTCTAAGTCATTGATCCGCTATGATGCTCGTC
AGAAGGAAAAGGCTTTAGGTTCTATCACAGAGGTTATTCAAACTGTGAAA
CGTTCGCAATCTCACATTCGTGCTCTAAGTCTTGATACTACCAATAAGCT
TGAAGAGAAGAAGAAGTTCAATCTTGATTGTGCTCTGCCTGCATCTGCTG
AAAATGTAAATAAAAGCACACCTGGTAGACAAACTCCTCAGGTTGGTTAT
GGAGGAGAGATGTCTGTTCAGGAAGCTGGCAGAAATTCAAGAAAATCAGG
GCGCAATTCTTTAATGGGGCTTAAAGTGAGGTCTCCAAGCCTTGCAGGAA
AGCATGAGCCTCAACCAAGTATCGCACCGGAGGTTTTCATGACTAAAGAC
TTAAAATGGACTGACAGTTGGGACCGTGCAGAAAGGGAGAGGGATATCCG
CCCAGGAATCGATCTAGCAACCACTTTGGAACGCATTGAGAAGAATTTTG
TTATCACAGATCCAAGAATTCCTGATAACCCCATTATTTTTGCCTCTGAT
AGCTTTCTTGAATTGACTGAATATACACGTGGAGAAATTTTGGGGGAGAA
CTGCAAGTTTCTTTCAGGACCTGAAACAGATCAGGCACTGTCTCAAAGAA
AGAGATGCTGTCCGAGACNAAGGGAAATACCGGTCAGTTGATTACTACCT
TAGATGGGAAAA
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