EY660540

Overview
NameEY660540
Unique NameEY660540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.301e-26
Identity = 68/163 (41.72%), Postives = 94/163 (57.67%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQS---RIAEEAVASGAPKAEDPQAGYSSLHVHDELLKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAKVHLIN 536
            MGR +++L+RIENK   QVTF+KRR+GL+KKA ELSVLCD ++AL+IFS+RG+LYEFCS+ S+   LERYQ       E  +++        Q  Y  L    E L+  QR L G +     +                IR+ +TQLM+  ++ LQ K H +N
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALN 163          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.638e-25
Identity = 68/166 (40.96%), Postives = 99/166 (59.64%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRIAEEAVASGAPKAEDPQAGYSSLHVHDELLKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAKVHLINTFHTLL 554
            MGRKKL+++RIENKS  QVTFSKRR+GLI+KAR+LSVLCD  +AL++ S+ G+LY F S D+L  IL+RY  + A++       KA D Q+   +   H ELL++V  +L G N +  +                  RA KT+LM+  +  L+ K  ++   + +L
Sbjct:    1 MGRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQHADDL------KALDHQSKALNYGSHYELLELVDSKLVGSNVKNVSIDALVQLEEHLETALSVTRAKKTELMLKLVENLKEKEKMLKEENQVL 160          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.062e-24
Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQ--SRIAEEAVASGAPKAEDPQAGYSSLHVHDELLKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAKVHLI 533
            MGR +++L+RIENK   QVTF+KRR+GL+KKA ELSVLCD +++L++FS+RG+LYEFCS  ++   LERYQ  S  + E     A + E+    Y  L    E L+  QR L G +     +                +R +KTQ M+  +  LQ K H++
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHIL 161          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.062e-24
Identity = 69/165 (41.82%), Postives = 95/165 (57.58%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQS---RIAEEAVASGAPKAED--PQAGYSSLHVHDELLKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAKVHLIN 536
            MGR +++L+RIENK   QVTF+KRR+GL+KKA ELSVLCD ++AL+IFS+RG+LYEFCS+ S+   LERYQ       E  V S    A +   Q  Y  L    + L+  QR L G +    +                 IRA++TQ M+  +  LQ+K  ++N
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMIRTLERYQKCNYGPPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLN 165          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.387e-24
Identity = 71/158 (44.94%), Postives = 91/158 (57.59%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRIAEEAVASGAPKAEDPQ---AGYSSLHVHDELLKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAK 521
            MGR  +QL+RIENK   QVTFSKRR+GL+KKA E+SVLCD D+AL++FS++G+LYEF S  S+  ILERYQ R + +  A   P  ED +     Y  L    + L+  QRQL G   +  T                 IR+ K QL+  SI  LQ K
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQ-RYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKK 157          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.387e-24
Identity = 71/158 (44.94%), Postives = 91/158 (57.59%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRIAEEAVASGAPKAEDPQ---AGYSSLHVHDELLKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAK 521
            MGR  +QL+RIENK   QVTFSKRR+GL+KKA E+SVLCD D+AL++FS++G+LYEF S  S+  ILERYQ R + +  A   P  ED +     Y  L    + L+  QRQL G   +  T                 IR+ K QL+  SI  LQ K
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQ-RYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKK 157          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.811e-24
Identity = 68/170 (40.00%), Postives = 94/170 (55.29%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRIAEEAVASGAPKAEDP-----------QAGYSSLHVHDELLKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAKVHLI 533
            MGR +++L+RIENK   QVTF+KRR+GL+KKA ELSVLCD ++AL+IFS+RG+LYEFCS+ S+   LERYQ          GAP+   P           Q  Y  L    + L+  QR L G +    +                 IRA++TQ M+  +  LQ+K  ++
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTLERYQK------CNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERML 164          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.811e-24
Identity = 67/170 (39.41%), Postives = 92/170 (54.12%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRIAEEAVASGAPKAE-----------DPQAGYSSLHVHDELLKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAKVHLI 533
            MGR +++L+R+ENK   QVTF+KRR+GL+KKA ELSVLCD ++AL++FS+RG+LYEFCS  S+   LERYQ          GAP+               Q  Y  L    E L+  QR L G +    ++                IR+ +TQ M+  +  LQ K HL+
Sbjct:    1 MGRGRVELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQK------CNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLL 164          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.366e-24
Identity = 65/168 (38.69%), Postives = 98/168 (58.33%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRI--AEEAVASGAPKAEDPQAGYSSLHVHDELLKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAKVHLINTFHTLL 554
            MGR K+ LQRIENK   QVTF+KRR+GL+KKA ELS+LCD ++ALV+FS  GRLY+F S+ ++   LERYQ  I  +++A A  + + ++    Y +L  H E+L+  QR L G +                      IR+ KTQ+++  +  L+ K  ++   + +L
Sbjct:    1 MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVL 168          
BLAST of EY660540 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.366e-24
Identity = 66/163 (40.49%), Postives = 91/163 (55.83%), Query Frame = 3
Query:   57 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQS---RIAEEAVASGAPKAEDPQAGYSSLHVHDELLKIVQRQLEGPNFEQFTATXXXXXXXXXXXXXXXIRAVKTQLMMGSIRTLQAKVHLIN 536
            MGR +++L+RIE K   QVTF+KRR+GL+KKA ELSVLCD ++AL+IFS+RG+LYEFCS+ S+   LERYQ       E  +++        Q  Y  L    E L+  QR L G +     +                IR+ +TQLM+  +   Q K H +N
Sbjct:    1 MGRGRVELKRIEGKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNISTREALEISSQQEYLKLKGRYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALN 163          
The following BLAST results are available for this feature:
BLAST of EY660540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
AGL9_PETHY3.301e-2641.72Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
FLC_ARATH1.638e-2540.96MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
SEP2_ARATH1.062e-2440.37Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
AGL9_SINAL1.062e-2441.82Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
MAD18_ORYSJ1.387e-2444.94MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI1.387e-2444.94MADS-box transcription factor 18 OS=Oryza sativa s... [more]
SEP3_ARATH1.811e-2440.00Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
MTF1_PEA1.811e-2439.41MADS-box transcription factor 1 OS=Pisum sativum G... [more]
MAD34_ORYSJ2.366e-2438.69MADS-box transcription factor 34 OS=Oryza sativa s... [more]
AGL9_SOLLC2.366e-2440.49Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-023-C09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660540 ID=EY660540; Name=EY660540; organism=Citrus sinensis; type=EST; length=843bp
ACTCTATCTGCTCTGCTGTGCTCCTTTTCTCATCTAGGGCGGCATTGGGT
CAGAAAATGGGCCGGAAAAAGCTTCAACTACAGCGAATTGAAAACAAAAG
CCGATGTCAAGTAACGTTCTCAAAGCGGCGTAGCGGATTGATCAAGAAGG
CTCGTGAGCTCTCCGTCCTCTGCGACGTCGACTTGGCGCTCGTCATCTTC
TCCAGCCGCGGTAGGCTTTACGAGTTCTGTAGCGCCGACAGTTTGGCCAG
CATCCTTGAGCGCTACCAGAGTCGCATTGCAGAGGAAGCTGTAGCTTCAG
GAGCACCTAAGGCAGAGGACCCTCAGGCTGGATATTCGAGCCTGCATGTG
CATGATGAACTGCTGAAAATAGTTCAAAGGCAACTTGAAGGTCCAAACTT
TGAGCAGTTCACTGCAACTGATCTTCTGCAGTTAGAGAATCTACTCAACG
ATACACTGACAGAAATTAGAGCTGTGAAGACACAACTGATGATGGGATCC
ATTAGAACACTCCAAGCGAAGGTACACTTAATTAATACTTTCCATACCTT
ACTCTGTGGAATTGTTTATTCCAGGTAAATCTTGAANGAAAACCTAAGCT
CCTAGCTGGGTGCAAATTGCAGTGTCCACTTTTATGTGGTTAAAATGACT
GCAAATATTTCTGTTTCACTACGACAGGGGTTGTTTACATTAAATATCAT
GGGTTCCATTTAGTTGGGGGAAATTTTTTCTCCTATTCATAAAAAGAGGA
TCTTATTGCAAGGAAACTGGACAGCTGGCTGGGTCAACAGTAGGCTTTCA
AATCTCCCAGGNTCATTGGTTGCCATTGCATAAAGTTTATCAA
back to top