EY660538

Overview
NameEY660538
Unique NameEY660538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660538 vs. ExPASy Swiss-Prot
Match: PSD11_DICDI (26S proteasome non-ATPase regulatory subunit 11 OS=Dictyostelium discoideum GN=psmD11 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.491e-49
Identity = 90/164 (54.88%), Postives = 123/164 (75.00%), Query Frame = 1
Query:  193 IYVPPAQQGTIDLQSGILHAEEKDYKTAYSYXXXXXXXXNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPE-LDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEK 681
            IY PP  Q  ID+QSGILH+EEKDYKTA+SY        ++LEDP A+ +LKYMLLCKIM +Q DDV  +++ K GL+Y     ++A+  ++ +H+KRSL +F+   ++F  QL +DPI+H HL+ LY  LLEQNLCR+IEP+SRVEI+HIA+LI+LP+D VE+
Sbjct:  191 IYCPPKLQAEIDMQSGILHSEEKDYKTAFSYFFESYETYDSLEDPFAMKALKYMLLCKIMTNQTDDVHALVNGKIGLKYHNNRSIEAITQISKSHAKRSLHMFQEVTKEFSDQLSDDPIIHSHLTELYSNLLEQNLCRIIEPFSRVEISHIAKLIDLPVDVVER 354          

HSP 2 Score: 28.1054 bits (61), Expect = 2.491e-49
Identity = 13/40 (32.50%), Postives = 24/40 (60.00%), Query Frame = 2
Query:  677 RKIIPNDFGQEFAGTLDQGVGCLIIF*DPKAECIYPATLK 796
            RK+      +++ G LDQG G LI+F + K + ++  +L+
Sbjct:  354 RKLSLMILDKKYNGILDQGTGTLIVFEEQKEDKLFNCSLE 393          
BLAST of EY660538 vs. ExPASy Swiss-Prot
Match: PSD11_MOUSE (26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus GN=Psmd11 PE=1 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 8.464e-47
Identity = 87/164 (53.05%), Postives = 118/164 (71.95%), Query Frame = 1
Query:  193 IYVPPAQQGTIDLQSGILHA-EEKDYKTAYSYXXXXXXXXNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEK 681
            IY PP  Q T+D+QSGI+HA EEKD+KTAYSY        ++++ P+A+ SLKYMLLCKIM++  +DV  ++S K  L+Y G + +A+K VA A   RSL  FE AL D++A+L +DPI+  HL+ LYD LLEQNL R+IEP+SRV+I HI+ LI+L    VE+
Sbjct:  200 IYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVER 363          

HSP 2 Score: 32.7278 bits (73), Expect = 8.464e-47
Identity = 17/40 (42.50%), Postives = 23/40 (57.50%), Query Frame = 2
Query:  677 RKIIPNDFGQEFAGTLDQGVGCLIIF*DPKAECIYPATLK 796
            RK+      ++F G LDQG G LIIF +P  +  Y A L+
Sbjct:  363 RKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALE 402          
BLAST of EY660538 vs. ExPASy Swiss-Prot
Match: PSD11_HUMAN (26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens GN=PSMD11 PE=1 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 8.464e-47
Identity = 87/164 (53.05%), Postives = 118/164 (71.95%), Query Frame = 1
Query:  193 IYVPPAQQGTIDLQSGILHA-EEKDYKTAYSYXXXXXXXXNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEK 681
            IY PP  Q T+D+QSGI+HA EEKD+KTAYSY        ++++ P+A+ SLKYMLLCKIM++  +DV  ++S K  L+Y G + +A+K VA A   RSL  FE AL D++A+L +DPI+  HL+ LYD LLEQNL R+IEP+SRV+I HI+ LI+L    VE+
Sbjct:  200 IYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVER 363          

HSP 2 Score: 32.7278 bits (73), Expect = 8.464e-47
Identity = 17/40 (42.50%), Postives = 23/40 (57.50%), Query Frame = 2
Query:  677 RKIIPNDFGQEFAGTLDQGVGCLIIF*DPKAECIYPATLK 796
            RK+      ++F G LDQG G LIIF +P  +  Y A L+
Sbjct:  363 RKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALE 402          
BLAST of EY660538 vs. ExPASy Swiss-Prot
Match: PSD11_BOVIN (26S proteasome non-ATPase regulatory subunit 11 OS=Bos taurus GN=PSMD11 PE=2 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 8.464e-47
Identity = 87/164 (53.05%), Postives = 118/164 (71.95%), Query Frame = 1
Query:  193 IYVPPAQQGTIDLQSGILHA-EEKDYKTAYSYXXXXXXXXNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEK 681
            IY PP  Q T+D+QSGI+HA EEKD+KTAYSY        ++++ P+A+ SLKYMLLCKIM++  +DV  ++S K  L+Y G + +A+K VA A   RSL  FE AL D++A+L +DPI+  HL+ LYD LLEQNL R+IEP+SRV+I HI+ LI+L    VE+
Sbjct:  200 IYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVER 363          

HSP 2 Score: 32.7278 bits (73), Expect = 8.464e-47
Identity = 17/40 (42.50%), Postives = 23/40 (57.50%), Query Frame = 2
Query:  677 RKIIPNDFGQEFAGTLDQGVGCLIIF*DPKAECIYPATLK 796
            RK+      ++F G LDQG G LIIF +P  +  Y A L+
Sbjct:  363 RKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALE 402          
BLAST of EY660538 vs. ExPASy Swiss-Prot
Match: RPN6_SCHPO (Probable 26S proteasome regulatory subunit rpn6 OS=Schizosaccharomyces pombe GN=rpn6 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.049e-46
Identity = 91/220 (41.36%), Postives = 131/220 (59.55%), Query Frame = 1
Query:   22 YTEALTLLTSLVKXXXXXXXXXXXXXXXXXXXXXHFSLRXXXXXXXXXXXXXXXXXXIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYXXXXXXXXNALEDPR-AVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVE 678
            YT+A+ L+ +L+                      + ++R                  +Y PP  QG +DLQSGILHA++ D+KTAYSY         +L+D + A+ SLKYMLL +IM++   +V  +++ K  ++Y G +++AM+A+A AH  RSL  FE AL+D+K +L  DPI+  HLSSLYD LLEQNL R++EP+SRVE++HIAELI L    VE
Sbjct:  141 YTDAINLINTLLSELKRMDDKMLLTEVHLLESKVYHAIRNIPKARASLTAAKTSANAVYCPPMLQGNLDLQSGILHADDMDFKTAYSYFYEAYEGFTSLDDDKKALSSLKYMLLSQIMLNSVSEVKSLLTGKHAIRYAGRDIEAMRAIAQAHENRSLADFEKALQDYKPELASDPIIRSHLSSLYDNLLEQNLLRVVEPFSRVEVSHIAELIGLSTVQVE 360          

HSP 2 Score: 33.4982 bits (75), Expect = 1.049e-46
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 2
Query:  710 FAGTLDQGVGCLIIF*DPKAECIYPATLK 796
            F G LDQG GCLI++ +P+ +  Y A L+
Sbjct:  372 FYGILDQGSGCLIVYDEPQQDKTYEAALE 400          

HSP 3 Score: 21.557 bits (44), Expect = 1.049e-46
Identity = 10/13 (76.92%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  681 KLSQMILDKNLLG 719
            KLSQMILDK   G
Sbjct:  362 KLSQMILDKIFYG 374          
BLAST of EY660538 vs. ExPASy Swiss-Prot
Match: RPN6_YEAST (26S proteasome regulatory subunit RPN6 OS=Saccharomyces cerevisiae GN=RPN6 PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 9.491e-32
Identity = 82/228 (35.96%), Postives = 120/228 (52.63%), Query Frame = 1
Query:   10 RSREYTEALTLLTSLVKXXXXXXXXXXXXXXXXXXXXXHFSLRXXXXXXXXXXXXXXXXXXIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYXXXXXXXXNALED----PRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQ-YVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVE 678
            + ++Y ++L L+  L++                     +  LR                  IY P      +DL SGILH E+KDYKTA+SY        + L       +A   LKYMLL KIM++  DDV  I+++K   + Y    +DAMKAVA+A++ RSL  F TAL+ ++ +L  D +   H ++LYDTLLE NLC++IEP+  VEI+HI+++I L    VE
Sbjct:  147 QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVE 374          

HSP 2 Score: 21.557 bits (44), Expect = 9.491e-32
Identity = 10/13 (76.92%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  681 KLSQMILDKNLLG 719
            KLSQMILDK   G
Sbjct:  376 KLSQMILDKIFYG 388          
BLAST of EY660538 vs. ExPASy Swiss-Prot
Match: YMJ5_CAEEL (Uncharacterized protein F59B2.5 OS=Caenorhabditis elegans GN=F59B2.5 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.943e-27
Identity = 65/165 (39.39%), Postives = 109/165 (66.06%), Query Frame = 1
Query:  196 YVPPAQQGTIDLQSGILH-AEEKDYKTAYSYXXXXXXXXNALEDP-RAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYV-GPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEK 681
            +  P  Q ++D+QSG+L+ AEE+DYKT++SY         ++ D   A  +LKYM+LCKIM+++ + +AG++++K  + Y   P + A++++ADA  KRSLK F  AL + K +L ED +V  H  +L   +LE+ + R+IEPYS +E+++IA +I + +  VE+
Sbjct:  245 FASPQLQASVDMQSGVLYSAEERDYKTSFSYFYEAFEGFASIGDKINATSALKYMILCKIMLNETEQLAGLLAAKEIVAYQKSPRIIAIRSMADAFRKRSLKDFVKALAEHKIELVEDKVVAVHSQNLERNMLEKEISRVIEPYSEIELSYIARVIGMTVPPVER 409          
The following BLAST results are available for this feature:
BLAST of EY660538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSD11_DICDI2.491e-4954.8826S proteasome non-ATPase regulatory subunit 11 OS... [more]
PSD11_MOUSE8.464e-4753.0526S proteasome non-ATPase regulatory subunit 11 OS... [more]
PSD11_HUMAN8.464e-4753.0526S proteasome non-ATPase regulatory subunit 11 OS... [more]
PSD11_BOVIN8.464e-4753.0526S proteasome non-ATPase regulatory subunit 11 OS... [more]
RPN6_SCHPO1.049e-4641.36Probable 26S proteasome regulatory subunit rpn6 OS... [more]
RPN6_YEAST9.491e-3235.9626S proteasome regulatory subunit RPN6 OS=Saccharo... [more]
YMJ5_CAEEL1.943e-2739.39Uncharacterized protein F59B2.5 OS=Caenorhabditis ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-023-C07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660538 ID=EY660538; Name=EY660538; organism=Citrus sinensis; type=EST; length=895bp
CCACGCGTCCGGAGTAGGGAGTACACAGAGGCATTGACCCTGCTTACTAG
CTTGGTCAAAGAGGTGAGGAGATTAGATGACAAACTCCTTCTTGTAGACA
TAGACTTGTTGGAAAGTAAGCTACATTTTTCATTAAGAAACCTCCCAAAG
GCAAAGGCTGCCCTCACAGCAGCGAGGACAGCTGCAAATGCTATATATGT
GCCACCGGCTCAACAAGGCACTATAGATTTGCAGAGCGGAATTTTACATG
CTGAAGAGAAGGATTACAAAACTGCTTATAGCTATTTCTTTGAAGCATTT
GAGGCTTTCAATGCTCTTGAAGATCCCAGGGCTGTTTTTAGTCTAAAATA
CATGTTGCTTTGCAAGATCATGGTGAGCCAAGCTGATGATGTTGCTGGGA
TAATTTCTTCTAAGGCTGGCCTGCAGTATGTTGGGCCAGAATTAGATGCT
ATGAAAGCTGTTGCTGATGCTCATTCCAAGAGGTCCTTGAAGTTGTTTGA
GACTGCTCTACGTGATTTCAAGGCTCAGCTTGAGGAAGACCCAATTGTGC
ATAGGCACCTCTCATCTCTGTATGACACACTTCTGGAACAAAACCTGTGC
AGGTTGATTGAGCCTTACTCAAGGGTAGAGATAGCACACATTGCAGAGCT
CATTGAGCTGCCGATAGATCATGTAGAGAAAAATTATCCCAAATGATTTT
GGACAAGAATTTGCTGGGACATTAGATCAGGGCGTTGGATGCCTCATCAT
ATTTTGAGATCCTAAGGCAGAATGCATCTATCCTGCCACTTTAAAACCAT
TTCCAACATGGGCAAGTTTGGGGACAGCCTTTTTGGGAGGCCTGCCAAGA
TATGGCATGAGGGTTTCTTTTGGGTTTTTGGGGGGCACTCCTTAG
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