EY660532

Overview
NameEY660532
Unique NameEY660532
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660532 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 5.055e-82
Identity = 155/180 (86.11%), Postives = 165/180 (91.67%), Query Frame = 3
Query:   36 MSEGEDAVRRRNA-MTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIKRLRESIELPLMNPELFLKVGINLAKAFFFMG 572
            MS+G+DA RRR A +T+YRKKLL HKE+ESRVR+ +ENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGN+SYSAVGGL DQI+ LRESIELPLMNPELFL+VGI   K     G
Sbjct:    1 MSDGDDAARRRTAAVTDYRKKLLHHKELESRVRTARENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYG 180          
BLAST of EY660532 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 2.774e-80
Identity = 152/180 (84.44%), Postives = 165/180 (91.67%), Query Frame = 3
Query:   36 MSEGEDAVRRRNA-MTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIKRLRESIELPLMNPELFLKVGINLAKAFFFMG 572
            M++ +++VRRR A ++EYRKKLLQHKE+ESRVR+ +ENLR AKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGN+SYSAVGGL DQI+ LRESIELPLMNPELFL+VGI   K     G
Sbjct:    1 MTDVDESVRRRTAAVSEYRKKLLQHKELESRVRTARENLRGAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYG 180          
BLAST of EY660532 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.764e-61
Identity = 110/170 (64.71%), Postives = 136/170 (80.00%), Query Frame = 3
Query:   63 RRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIKRLRESIELPLMNPELFLKVGINLAKAFFFMG 572
            R  A+ +YRKKLL+HKEI+ R++ ++E L+   K++ K+E+DLK+LQSVGQI+GEVL+ L  E+ IVKA++GPRYVVGCR ++DK KL  GTRV LDMTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QI+ LRE IELPL NPELF +VGI   K     G
Sbjct:    5 RDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYG 174          

HSP 2 Score: 31.187 bits (69), Expect = 2.764e-61
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  545 PRQGVLLYGPPGTGKII 595
            P +G LLYGPPGTGK +
Sbjct:  166 PPKGCLLYGPPGTGKTL 182          
BLAST of EY660532 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.764e-61
Identity = 110/170 (64.71%), Postives = 136/170 (80.00%), Query Frame = 3
Query:   63 RRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIKRLRESIELPLMNPELFLKVGINLAKAFFFMG 572
            R  A+ +YRKKLL+HKEI+ R++ ++E L+   K++ K+E+DLK+LQSVGQI+GEVL+ L  E+ IVKA++GPRYVVGCR ++DK KL  GTRV LDMTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QI+ LRE IELPL NPELF +VGI   K     G
Sbjct:    5 RDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYG 174          

HSP 2 Score: 31.187 bits (69), Expect = 2.764e-61
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  545 PRQGVLLYGPPGTGKII 595
            P +G LLYGPPGTGK +
Sbjct:  166 PPKGCLLYGPPGTGKTL 182          
BLAST of EY660532 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.764e-61
Identity = 110/170 (64.71%), Postives = 136/170 (80.00%), Query Frame = 3
Query:   63 RRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIKRLRESIELPLMNPELFLKVGINLAKAFFFMG 572
            R  A+ +YRKKLL+HKEI+ R++ ++E L+   K++ K+E+DLK+LQSVGQI+GEVL+ L  E+ IVKA++GPRYVVGCR ++DK KL  GTRV LDMTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QI+ LRE IELPL NPELF +VGI   K     G
Sbjct:    5 RDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYG 174          

HSP 2 Score: 31.187 bits (69), Expect = 2.764e-61
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  545 PRQGVLLYGPPGTGKII 595
            P +G LLYGPPGTGK +
Sbjct:  166 PPKGCLLYGPPGTGKTL 182          
BLAST of EY660532 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.764e-61
Identity = 110/170 (64.71%), Postives = 136/170 (80.00%), Query Frame = 3
Query:   63 RRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIKRLRESIELPLMNPELFLKVGINLAKAFFFMG 572
            R  A+ +YRKKLL+HKEI+ R++ ++E L+   K++ K+E+DLK+LQSVGQI+GEVL+ L  E+ IVKA++GPRYVVGCR ++DK KL  GTRV LDMTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QI+ LRE IELPL NPELF +VGI   K     G
Sbjct:    5 RDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYG 174          

HSP 2 Score: 31.187 bits (69), Expect = 2.764e-61
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  545 PRQGVLLYGPPGTGKII 595
            P +G LLYGPPGTGK +
Sbjct:  166 PPKGCLLYGPPGTGKTL 182          
BLAST of EY660532 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 4.222e-56
Identity = 100/170 (58.82%), Postives = 132/170 (77.65%), Query Frame = 3
Query:   63 RRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIKRLRESIELPLMNPELFLKVGINLAKAFFFMG 572
            R  A+  YR+KL + ++IE +++ +++      K+F+K+E+D+KSLQSVGQI+GEVL+ L  E+ IVKA++GPRYVVGCR  ++KE+L  GTRV LDMTTLTIMR LPREVDP+VY M HEDPGN+SYS VGGL++QI+ LRE +ELPL+NPELF +VGI   K     G
Sbjct:   22 RTKALNSYRRKLAECRDIEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVLKQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFG 191          

HSP 2 Score: 29.6462 bits (65), Expect = 4.222e-56
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  545 PRQGVLLYGPPGTGKII 595
            P +G LL+GPPGTGK +
Sbjct:  183 PPKGCLLFGPPGTGKTL 199          
BLAST of EY660532 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 8.985e-55
Identity = 114/199 (57.29%), Postives = 147/199 (73.87%), Query Frame = 3
Query:   63 RRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIKRLRESIELPLMNPELFLKVGINLAKAFFFMGLLELAK-LFSRAMPVTY-MKFSEGVSMAL 653
            R  A+ +Y+  LLQH+E +S+++ ++   R   K+++KTEDD+KSLQSVGQIIGEVL+ LD+ER IVKASSGPRYVVGCR+ VD+  L  G RV LDMTTLTIMR LPREVDP+VYNM  EDPG++S++ VGGL++QI+ LRE IELPL NPELFL+VGI   K     G     K L +RA+  +  + F + VS A+
Sbjct:    4 RDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAI 202          
BLAST of EY660532 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.389e-47
Identity = 92/175 (52.57%), Postives = 123/175 (70.29%), Query Frame = 3
Query:   51 DAVRRRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKL-TSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIKRLRESIELPLMNPELFLKVGINLAKAFFFMG 572
            +  ++  A+  YR +L++HK  E R+    E ++  KK+F KTED +K++Q +G+IIGEVLR LD ER IVKA +GPRYVV C +  DK  L   G RV LD+TTLTI++ LPREVDP+++NM  E PG+VSY  +GGLS+QI+ LRE +ELPLM PELF++VGI   K     G
Sbjct:    4 EETKKEQALQNYRDRLIEHKNAELRLNKAHELIKKLKKDFQKTEDHIKTIQYIGEIIGEVLRSLDEERFIVKACNGPRYVVRCANYQDKAHLLVPGARVTLDLTTLTILKILPREVDPIIFNMTAESPGSVSYGEIGGLSNQIRELREVVELPLMIPELFIRVGIKAPKGVLLYG 178          
BLAST of EY660532 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 189.119 bits (479), Expect = 2.370e-47
Identity = 86/167 (51.50%), Postives = 126/167 (75.45%), Query Frame = 3
Query:   72 AMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIKRLRESIELPLMNPELFLKVGINLAKAFFFMG 572
            A+ ++++KLL+H+  + +++  ++N+R  +K ++KTE+D+K+LQS+GQ+IGEV++ L  E+ IVKASSGPRY+VG R+ VD+ KL  G RV LD+TTLTIMR LPRE DP+VYNM   + G +++  +GGL++QI+ LRE IELPL NPE+F +VGI   K     G
Sbjct:   56 ALNQFKRKLLEHRRYDDQLKQRRQNIRDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYG 222          
The following BLAST results are available for this feature:
BLAST of EY660532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
PS10B_ARATH5.055e-8286.1126S protease regulatory subunit S10B homolog B OS=... [more]
PS10A_ARATH2.774e-8084.4426S protease regulatory subunit 10B homolog A OS=A... [more]
PRS10_SPETR2.764e-6164.7126S protease regulatory subunit S10B OS=Spermophil... [more]
PRS10_MOUSE2.764e-6164.7126S protease regulatory subunit S10B OS=Mus muscul... [more]
PRS10_HUMAN2.764e-6164.7126S protease regulatory subunit S10B OS=Homo sapie... [more]
PRS10_BOVIN2.764e-6164.7126S protease regulatory subunit S10B OS=Bos taurus... [more]
PRS10_CAEEL4.222e-5658.82Probable 26S protease regulatory subunit S10B OS=C... [more]
PRS10_SCHPO8.985e-5557.29Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
PRS10_DICDI1.389e-4752.5726S protease regulatory subunit S10B OS=Dictyostel... [more]
PRS10_YEAST2.370e-4751.5026S protease subunit RPT4 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-023-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660532 ID=EY660532; Name=EY660532; organism=Citrus sinensis; type=EST; length=794bp
TCCCGTCCCGACCCACGCGTCCGCCGACTGCAACGATGAGCGAAGGAGAA
GACGCCGTTAGACGCCGTAATGCCATGACGGAGTACCGTAAGAAGCTACT
CCAGCACAAAGAAATCGAATCTAGAGTTCGATCTGTTAAGGAGAATTTGA
GAGCTGCAAAGAAGGAGTTCAACAAAACAGAAGATGATTTGAAGTCTCTT
CAAAGTGTTGGGCAGATCATTGGAGAAGTTCTCAGACCTCTTGACAATGA
ACGCTTGATTGTTAAAGCTAGCAGCGGGCCCCGTTATGTGGTTGGATGCC
GCAGCAAAGTGGATAAAGAGAAGTTGACTTCGGGAACAAGAGTTGTTCTT
GATATGACAACGCTCACAATCATGCGAGCTCTTCCTCGTGAAGTTGATCC
GGTTGTATATAACATGTTGCATGAAGATCCGGGTAATGTTAGCTATTCGG
CTGTGGGTGGTTTATCTGATCAAATCAAAAGATTAAGGGAATCTATTGAG
CTACCTTTGATGAATCCTGAACTTTTCCTTAAAGTTGGAATAAACCTCGC
CAAGGCGTTCTTCTTTATGGGCCTCCTGGAACTGGCAAAATTATTTAGCC
GAGCAATGCCAGTAACATATATGAAATTTTCTGAAGGGGTTTCAATGGCC
TTATGGTAAGTACTGTGGGGAAGGGCAGGTTGAAAAAAAAATGTTGGATA
TGACGGGATCATTACCCTGTTCCTTTTTATGGAGGAAATGGAGCCCCGGG
GGAACCGTTTTTTGTAAGATCCCTGCAATCCGAATTCCAGGGCC
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