EY660512

Overview
NameEY660512
Unique NameEY660512
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY660512 vs. ExPASy Swiss-Prot
Match: SSG1_ANTMA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus GN=WAXY PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.633e-73
Identity = 129/171 (75.44%), Postives = 151/171 (88.30%), Query Frame = 2 
Query:    2 KKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 514
            KK  E+Q+++LE+LYP+KARGVAKFN+PLAHMI AGADF+L+PSRFEPCGLIQLHAMRYGT+PI ASTGGLVDTV EGFTGF MG+F+V+C  VDP DV  ++TTV RALA YG+ A  EM++N MAQDLSWKGPAK WE+ LL+L V+GSEPG+DGEEIAPLAKENVATP
Sbjct:  438 KKKFEQQIQELEVLYPDKARGVAKFNVPLAHMITAGADFMLVPSRFEPCGLIQLHAMRYGTIPICASTGGLVDTVTEGFTGFHMGAFNVECATVDPADVQKIATTVERALAAYGSVAYKEMIQNCMAQDLSWKGPAKNWEKMLLSLGVSGSEPGVDGEEIAPLAKENVATP 608
[Close]
BLAST of EY660512 vs. ExPASy Swiss-Prot
Match: SSG1_MANES (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Manihot esculenta GN=WAXY PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.911e-72
Identity = 130/171 (76.02%), Postives = 148/171 (86.55%), Query Frame = 2 
Query:    2 KKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 514
            KK  EKQ+E LE+LYP+KARGVAKFN+PLAHMI AGADF+L+PSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV+EG+TGFQMG+  V+C+ +D  DVAA+  TV RAL TY T AL EM+ N MAQDLSWKGPA+ WE+ LL+LEV GSEPG +GEEIAPLAKENV TP
Sbjct:  438 KKKFEKQIEHLEVLYPDKARGVAKFNVPLAHMITAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVKEGYTGFQMGALHVECDKIDSADVAAIVKTVARALGTYATAALREMILNCMAQDLSWKGPARMWEKMLLDLEVTGSEPGTEGEEIAPLAKENVPTP 608
[Close]
BLAST of EY660512 vs. ExPASy Swiss-Prot
Match: SSG1_IPOBA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Ipomoea batatas GN=WAXY PE=2 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 3.801e-72
Identity = 131/171 (76.61%), Postives = 149/171 (87.13%), Query Frame = 2 
Query:    2 KKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 514
            KK  E+Q+EQLE++YP+KARGVAKFN+PLAHMI AGADF+LIPSRFEPCGLIQLHAMRYGT  I ASTGGLVDTV+EG+TGF MG+F+VDCE VDP DV  V TTV RALA YGT A  EM+KN M+Q+LSWKGPAK WE  LL+L VAGSEPG++G+EIAPLAKENVATP
Sbjct:  438 KKKFEQQIEQLEVMYPDKARGVAKFNVPLAHMITAGADFMLIPSRFEPCGLIQLHAMRYGTPCICASTGGLVDTVKEGYTGFHMGAFNVDCETVDPEDVLKVITTVGRALAMYGTLAFTEMIKNCMSQELSWKGPAKNWETVLLSLGVAGSEPGVEGDEIAPLAKENVATP 608
[Close]
BLAST of EY660512 vs. ExPASy Swiss-Prot
Match: SSG1_SOLTU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum GN=WAXY PE=1 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 8.469e-72
Identity = 127/171 (74.27%), Postives = 149/171 (87.13%), Query Frame = 2 
Query:    2 KKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 514
            KK  E+++EQLE+LYP KA+GVAKFN+PLAHMI AGADF+L+PSRFEPCGLIQLHAMRYGTVPI ASTGGLVDTV+EG+TGF MG+F+V+C+ VDP DV  + TTV RALA YGT A AEM+KN M+++LSWK PAKKWE  LL L  +GSEPG++GEEIAPLAKENVATP
Sbjct:  437 KKEFEQEIEQLEVLYPNKAKGVAKFNVPLAHMITAGADFMLVPSRFEPCGLIQLHAMRYGTVPICASTGGLVDTVKEGYTGFHMGAFNVECDVVDPADVLKIVTTVARALAVYGTLAFAEMIKNCMSEELSWKEPAKKWETLLLGLGASGSEPGVEGEEIAPLAKENVATP 607
[Close]
BLAST of EY660512 vs. ExPASy Swiss-Prot
Match: SSG1_ARATH (Probable granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=WAXY PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.399e-66
Identity = 123/171 (71.93%), Postives = 142/171 (83.04%), Query Frame = 2 
Query:    2 KKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 514
            KK ME Q+ +LE  +P KA GVAKFN+PLAHMI AGADFI++PSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV++G+TGF +G F+V CE VDP DV A +  V RA+A YGT A+ EM+KN M QD SWKGPA+ WE+ LL+L VAGSE G +GEEIAPLAKENVATP
Sbjct:  440 KKKMEAQILELEEKFPGKAVGVAKFNVPLAHMITAGADFIIVPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVKDGYTGFHIGRFNVKCEVVDPDDVIATAKAVTRAVAVYGTSAMQEMVKNCMDQDFSWKGPARLWEKVLLSLNVAGSEAGTEGEEIAPLAKENVATP 610
[Close]
BLAST of EY660512 vs. ExPASy Swiss-Prot
Match: SSG1B_HORVU (Granule-bound starch synthase 1b, chloroplastic/amyloplastic (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.639e-65
Identity = 121/171 (70.76%), Postives = 139/171 (81.29%), Query Frame = 2 
Query:    2 KKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 514
            KK ME++L  LE+ YP+ ARG+AKFN+PLAHM+ AGADFI+IPSRFEPCGLIQL  M YG VPI +STGGLVDTV EG TGF MGSF+V+ E VDP DVAAV + V RAL  Y T     M++N MAQDLSWKGPAKKWEE LL+L V GS+PGI+GEEIAPLAK+NVATP
Sbjct:  395 KKKMEEELMLLEVKYPQNARGIAKFNVPLAHMMFAGADFIIIPSRFEPCGLIQLQGMSYGVVPICSSTGGLVDTVREGVTGFHMGSFNVEFETVDPTDVAAVGSNVTRALKQYRTPVFHAMVQNCMAQDLSWKGPAKKWEEALLSLGVEGSQPGIEGEEIAPLAKQNVATP 565
[Close]
BLAST of EY660512 vs. ExPASy Swiss-Prot
Match: SSG1_PEA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.501e-65
Identity = 122/171 (71.35%), Postives = 141/171 (82.46%), Query Frame = 2 
Query:    2 KKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 514
            KK MEKQ+E LE  YP KA G+ KFN PLAH IIAGADFI+IPSRFEPCGL+QLHAM YGTVPIV+STGGLVDTV+EG+TGF  G F V+CE VDP DV  ++ TV+RAL TYGTQA+ +++ N MAQ+ SWK PAK WE+ LLNLEV G+  GIDG+EIAPLAKENVATP
Sbjct:  433 KKIMEKQIEVLEEKYPGKAIGITKFNSPLAHKIIAGADFIVIPSRFEPCGLVQLHAMPYGTVPIVSSTGGLVDTVKEGYTGFHAGPFDVECEDVDPDDVDKLAATVKRALKTYGTQAMKQIILNCMAQNFSWKKPAKLWEKALLNLEVTGNVAGIDGDEIAPLAKENVATP 603
[Close]
BLAST of EY660512 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa GN=WAXY PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 6.295e-59
Identity = 113/171 (66.08%), Postives = 129/171 (75.44%), Query Frame = 2 
Query:    2 KKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 514
            KK  EK L+ +E  YP K R V KFN PLAH+I+AGAD + +PSRFEPCGLIQL  MRYGT    ASTGGLVDTV EG TGF MG  SVDC+ V+P DV  V+TT++RA+   GT A  EM++N M QDLSWKGPAK WE  LL L VAGSEPG++GEEIAPLAKENVA P
Sbjct:  436 KKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVQKVATTLKRAIKIVGTPAYNEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSEPGVEGEEIAPLAKENVAAP 606
[Close]
BLAST of EY660512 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSJ (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=WAXY PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.187e-57
Identity = 111/171 (64.91%), Postives = 127/171 (74.27%), Query Frame = 2 
Query:    2 KKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 514
            KK  EK L+ +E  YP K R V KFN PLAH+I+AGAD + +PSRFEPCGLIQL  MRYGT    ASTGGLVDTV EG TGF MG  SVDC+ V+P DV  V+ T++RA+   GT A  EM++N M QDLSWKGPAK WE  LL L VAGS PGI+G+EIAPLAKENVA P
Sbjct:  439 KKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSAPGIEGDEIAPLAKENVAAP 609
[Close]
BLAST of EY660512 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=WAXY PE=3 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 1.187e-57
Identity = 111/171 (64.91%), Postives = 127/171 (74.27%), Query Frame = 2 
Query:    2 KKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 514
            KK  EK L+ +E  YP K R V KFN PLAH+I+AGAD + +PSRFEPCGLIQL  MRYGT    ASTGGLVDTV EG TGF MG  SVDC+ V+P DV  V+ T++RA+   GT A  EM++N M QDLSWKGPAK WE  LL L VAGS PGI+G+EIAPLAKENVA P
Sbjct:  439 KKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSAPGIEGDEIAPLAKENVAAP 609
The following BLAST results are available for this feature:
BLAST of EY660512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 357
Match NameE-valueIdentityDescription
SSG1_ANTMA2.633e-7375.44Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MANES2.911e-7276.02Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_IPOBA3.801e-7276.61Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SOLTU8.469e-7274.27Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ARATH1.399e-6671.93Probable granule-bound starch synthase 1, chloropl... [more]
SSG1B_HORVU2.639e-6570.76Granule-bound starch synthase 1b, chloroplastic/am... [more]
SSG1_PEA4.501e-6571.35Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSA6.295e-5966.08Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSJ1.187e-5764.91Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSI1.187e-5764.91Granule-bound starch synthase 1, chloroplastic/amy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-023-A05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660512 ID=EY660512; Name=EY660512; organism=Citrus sinensis; type=EST; length=815bp
CAAAAAACCAATGGAGAAGCAGCTTGAACAGTTGGAGATACTGTACCCTG
AGAAAGCCAGAGGAGTAGCGAAATTCAATATTCCTCTGGCGCATATGATA
ATAGCAGGAGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGTGG
TCTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATCGTGGCTT
CCACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCCAG
ATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGATGTGGC
TGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGTACTCAAG
CTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTCATGGAAA
GGACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGG
TAGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAA
ATGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTGG
ACCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTACTTAGGA
AATAACATANGTTGGCAGTATATGCAGCATGCGCTATTTTCAATAATGGT
TTGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAAATATTAAGTCT
GTTTTAACAGTTTTGTAAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGA
AAATGAAAAGTTCACTGAAACAAGTTATAAAAAAAAAAAAAAAAAAAAAA
AAAGGGGCGGCCGCT
back to top