EY660502

Overview
NameEY660502
Unique NameEY660502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660502 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 417.927 bits (1073), Expect = 3.480e-116
Identity = 203/252 (80.56%), Postives = 219/252 (86.90%), Query Frame = 2
Query:   47 AATSGAVLNGLGSSFINGGKKSQALLAG--TNRVTXXXXXXXXXXLPP--KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFGAGQAKPTWGS 790
            A TS AVLNGL SSF+ GG KSQALLA     RV           L    KKSWIPAV+GGGNL++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAWSGIPWFEAGADPGAIAPFSFG+LLGTQL+LMGWVESKRWVDFF+P+SQSVEWATPWS+TAENFAN TGEQGYPGGKFFDPL LAGT+ +GVY+PDTEKL+RLKVAEIKHARLAM+AMLIFYF AGQ K   G+
Sbjct:    2 ATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEAGQGKTPLGA 253          
BLAST of EY660502 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 412.92 bits (1060), Expect = 1.119e-114
Identity = 198/253 (78.26%), Postives = 220/253 (86.96%), Query Frame = 2
Query:   41 MAAATSGAVLNGLGSSFINGGKKSQALLAG--TNRVTXXXXXXXXXX-LPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFGAGQAKPTWGS 790
            M   ++ AVLNGL SSF+ GGKK+QALL    T RVT           + PKKSWIPAVK GGNL++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF+ +SQS++WATPWS+TAENFAN TGEQGYPGGKFFDPL LAGT+ +GVY+PDTEKL+RLK+AEIKH+RLAM+AMLIFYF AGQ K   G+
Sbjct:    1 MTTTSATAVLNGLSSSFLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEAGQGKTPLGA 253          
BLAST of EY660502 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 404.831 bits (1039), Expect = 3.049e-112
Identity = 197/258 (76.36%), Postives = 221/258 (85.66%), Query Frame = 2
Query:   41 MAAATSG-AVLNGLGSSFINGGKKS-QALLAGTNRV------TXXXXXXXXXXLPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFGAGQAKPTWGS 790
            MAAATS  A++NG  S F++GGKKS Q+LL   ++V      T            PKKSWIPAVKGGGN ++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAM AV+GIFVGQAW+GIPWFEAGADPGA+APFSFG+LLGTQLLLMGWVESKRWVDFF+P+SQSVEWATPWSRTAENF+N+TGEQGYPGGKFFDPL LAGTI +GVY PDT+KL+RLK+AEIKHARLAM+AMLIFYF AGQ K   G+
Sbjct:    1 MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGA 258          
BLAST of EY660502 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.733e-28
Identity = 74/199 (37.19%), Postives = 100/199 (50.25%), Query Frame = 2
Query:  179 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYF 757
            P +  W P          PEWLDGSLPGD+GFDPLGLG DP  LKW  +AEL+H RWAM    GIF+ +  + I       W+ AG            +L   +L+L+GW E +RW D   P   + +   P ++          + GYPGG +FDPL        G       K+  L+  EIK+ RLAM+A++  +F
Sbjct:   63 PDRPLWFPGSTP------PEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFT---DTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT------DVGYPGGLWFDPL--------GWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWF 238          
BLAST of EY660502 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.357e-27
Identity = 79/250 (31.60%), Postives = 118/250 (47.20%), Query Frame = 2
Query:   26 VEIISMAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYF 757
            V   S ++  +G+++    +SF+ GG++ +     T               P +  W P          P WLDGSLPGD+GFDPLGL  DP  L+W ++AEL+H RWAM    GIF+ +  + I       W+ AG            +L   +L+L+GW E +RW D   P   + +   P ++          + GYPGG +FDPL        G       K+  L+  EIK+ RLAM+A++  +F
Sbjct:   13 VAFSSPSSRRNGSIVGTTKASFL-GGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTP------PPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFT---DTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT------DVGYPGGLWFDPL--------GWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWF 238          
BLAST of EY660502 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.302e-25
Identity = 97/315 (30.79%), Postives = 132/315 (41.90%), Query Frame = 2
Query:   47 AATSGAVLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKS----------WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYF-GAGQAKPTWGSWVENM 805
            AATS A      +S I G + +  +  G+ R T           P K +          W P        I+P+WLDGSL GDYGFDP GLGK   +L++                                           +RE ELIHGRWAM A +G    +  +G+ W +AG        +  G   PFS  +L+  ++L++G++E +R     N E  S                   ++ YPGGKFFDPL LA          D EK  +L++AEIKHARLAMVA L F    A   K    +W  ++
Sbjct:    2 AATSAAAA---AASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGA------ISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-----NAELDS------------------EKRLYPGGKFFDPLGLAA---------DPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHL 275          
BLAST of EY660502 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.648e-23
Identity = 87/253 (34.39%), Postives = 112/253 (44.27%), Query Frame = 2
Query:  179 PPKKS-----------WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIF 751
            PPKKS           W P    G N   PEWLDGS+ GD GFDP GLGK   +L++                                           +RE ELIHGRWAM   +G    +A +GI W +AG        +  G   PFS  +L+  ++L++G++E +R  +  +PE +                       YPGG +FDPL LA          D EKLD LK+AEIKH+RLAMVA LIF
Sbjct:   43 PPKKSRQVQDDGDRLVWFP----GAN--PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSE-LDPEKRI----------------------YPGG-YFDPLGLAA---------DPEKLDTLKLAEIKHSRLAMVAFLIF 256          
BLAST of EY660502 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.006e-22
Identity = 70/195 (35.90%), Postives = 101/195 (51.79%), Query Frame = 2
Query:  185 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIF 751
            K  W+P       L +P +L GSLPGD GFDPLGL +DP  L+W+ +AEL++GRWAM  V G+ + + ++ I       W+ AG +       S  +L   + +L  +VE +RW D  NP S + +         + ++   GE GYPGG  F+PL  A T++              K  EI + RLAM+A L F
Sbjct:   53 KGEWLPG------LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFA---SSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPAGEVGYPGG-IFNPLNFAPTLE-------------AKEKEIANGRLAMLAFLGF 218          
BLAST of EY660502 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.716e-22
Identity = 89/267 (33.33%), Postives = 107/267 (40.07%), Query Frame = 2
Query:  194 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAF---------------------------------------------LKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG-------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFGAGQAKPTWGSWVENMLMKILTDCGKG 838
            W+P      N   PEWLDGSLPGD GFDPLGL K   F                                             L  +RE ELIHGRWAM A +G  V +A +G+ W EAG       +  G   PFS   L+  +++L+G  E  R  +  NPE +                       YPGG  FDPL LA          D E+  RLK AEIKHARLAMV+    +FG G    + G      L K       G
Sbjct:   53 WLP------NTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVELDGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSE-TNPEKRC----------------------YPGG-VFDPLKLAS--------EDEERAFRLKTAEIKHARLAMVS----FFGYGVQALSTGEGALGSLAKFADGLNNG 277          
BLAST of EY660502 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.927e-22
Identity = 82/256 (32.03%), Postives = 111/256 (43.36%), Query Frame = 2
Query:  194 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYF-GAGQAKPTWGSWVENM 805
            W P  K      +PE+LDGSL GDYGFDP GLGK   +L++                                           +RE ELIHGRWAM A +G    +  +G+ W +AG        +  G   PFS  +L+  ++L++G++E +R     N E  S                   ++ YPGGKFFDPL LA          D  K  +L++AEIKHARLAMV  L F    A   K    +W  ++
Sbjct:   55 WFPGAK------SPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-----NAELDS------------------EKRLYPGGKFFDPLGLAS---------DPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHL 272          
The following BLAST results are available for this feature:
BLAST of EY660502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB4A_SOLLC3.480e-11680.56Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC1.119e-11478.26Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4_SPIOL3.049e-11276.36Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB12_PETHY2.733e-2837.19Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC1.357e-2731.60Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB4A_ARATH6.302e-2530.79Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4C_ARATH2.648e-2334.39Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB24_PEA1.006e-2235.90Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB29_CHLRE1.716e-2233.33Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB4B_ARATH2.927e-2232.03Chlorophyll a-b binding protein CP29.2, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-022-H07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660502 ID=EY660502; Name=EY660502; organism=Citrus sinensis; type=EST; length=849bp
CCCATTCTGCAGCTACAGAAGTCAAGTAGAGATCATATCTATGGCGGCTG
CAACATCCGGGGCTGTGTTAAACGGATTGGGTTCTTCATTCATAAATGGT
GGCAAGAAGAGCCAGGCTCTTTTGGCTGGCACGAATAGAGTGACAAGTTC
TAAAAAGTCAGTTGTTGTAGCTGCTCTTCCACCTAAAAAATCTTGGATTC
CTGCTGTTAAAGGTGGTGGCAACCTCATTAATCCCGAATGGCTCGATGGC
TCTCTCCCAGGTGACTACGGATTCGACCCACTTGGGCTTGGAAAGGACCC
AGCATTCCTGAAATGGTACAGAGAAGCAGAACTGATCCACGGACGATGGG
CAATGGCTGCAGTTGTTGGGATATTCGTCGGACAGGCGTGGAGTGGGATT
CCATGGTTCGAGGCTGGAGCAGATCCTGGAGCCATAGCACCCTTCTCCTT
CGGCTCACTCCTGGGAACCCAGCTTCTCCTTATGGGTTGGGTTGAGAGCA
AGCGGTGGGTTGATTTTTTCAATCCTGAATCTCAATCAGTTGAATGGGCA
ACACCTTGGTCAAGAACTGCTGAAAACTTTGCCAATGCGACTGGTGAACA
AGGCTACCCTGGTGGAAAGTTTTTTGATCCCTTATGTTTGGCTGGAACAA
TTAAGGATGGTGTCTACATTCCTGACACTGAGAAGCTTGACAGGCTCAAA
GTTGCTGAGATTAAACATGCTAGGCTTGCTATGGTGGCCATGTTGATTTT
CTACTTTGGAGCTGGGCAAGCAAAACCCACTTGGGGGTCTTGGGTTGAAA
ACATGCTTATGAAGATACTCACTGATTGTGGTAAAGGGAATCATCGGAT
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