EY660488
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY660488 vs. ExPASy Swiss-Prot
Match: RK12_NICSY (50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 5.950e-28 Identity = 74/137 (54.01%), Postives = 85/137 (62.04%), Query Frame = 1 Query: 133 PYLKQFLKFPSYPLPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKK 543 P+ K+ L+FP Q RA+ LRPL AVEAPEK+ +L EIS+LTL + LV+YLQDKL KTEFDVVIDEVPSNARIA IKAVR LT+LALKEAK+LIEGLPKK Sbjct: 26 PFPKKTLEFPIRTPKLQNRRATFLRPLAAVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAAEAPAVVEE---KTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKK 159
BLAST of EY660488 vs. ExPASy Swiss-Prot
Match: RK121_ARATH (50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana GN=RPL12A PE=1 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.325e-27 Identity = 71/122 (58.20%), Postives = 83/122 (68.03%), Query Frame = 1 Query: 178 TQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKK 543 T T+RA+HLRP+ AVEAPEKIEK+ +EISSLTL+E LVDYLQDK +TEFDVVI+EVPS++RIAVIKAVR LT+LALKEAK+LIEGLPKK Sbjct: 46 TLTHRATHLRPIAAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGGAAAVVEE---QTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKK 164
BLAST of EY660488 vs. ExPASy Swiss-Prot
Match: RK12_TOBAC (50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum GN=RPL12 PE=1 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 3.857e-27 Identity = 73/137 (53.28%), Postives = 84/137 (61.31%), Query Frame = 1 Query: 133 PYLKQFLKFPSYPLPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKK 543 P+ K+ L+FP RA+ LRPL AVEAPEK+ +L EIS+LTL + LV+YLQDKL KTEFDVVIDEVPSNARIA IKAVR LT+LALKEAK+LIEGLPKK Sbjct: 26 PFPKKALEFPIRTPKLHHRRATFLRPLAAVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAAEAPAVVEE---KTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKK 159
BLAST of EY660488 vs. ExPASy Swiss-Prot
Match: RK123_ARATH (50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=2) HSP 1 Score: 118.242 bits (295), Expect = 2.500e-26 Identity = 70/131 (53.44%), Postives = 86/131 (65.65%), Query Frame = 1 Query: 151 LKFPSYPLPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKK 543 ++FP + ++RA +LRP+ AVEAPEKIEK+ +EISSLTL+E LVDYLQDK +TEFDVVI+EVPS++RIAVIKAVR LT+LALKEAK+LIEGLPKK Sbjct: 33 IEFPFRLSSSSSHRAINLRPISAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGGAAAVVEE---QTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKK 160
BLAST of EY660488 vs. ExPASy Swiss-Prot
Match: RK12_SPIOL (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea GN=RPL12 PE=1 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 4.264e-26 Identity = 72/141 (51.06%), Postives = 86/141 (60.99%), Query Frame = 1 Query: 133 PYLKQFLKFP----SYPLPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKK 543 P Q L+FP + P+ + R + LRP+ AVEAPEKIE+L T++S LTL+E LVD+LQDKL KTEFDV IDEVPSNARI+VIKAVR LT+L LKEAK+LIEGLPKK Sbjct: 25 PKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAVEAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVEE---KTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKK 162
BLAST of EY660488 vs. ExPASy Swiss-Prot
Match: RK12_ORYSJ (50S ribosomal protein L12, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL12-2 PE=2 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 2.506e-18 Identity = 58/125 (46.40%), Postives = 70/125 (56.00%), Query Frame = 1 Query: 169 PLPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKK 543 P + RA + A E+P+ +E L I+ LTL+E LVD+LQ++L KTEFDVVI+EVPS+ARIA IK VR LTNLALKEAKDLIEGLPKK Sbjct: 35 PSRARPRRAVAVVASTATESPKVLE-LGDAIAGLTLEEARGLVDHLQERLGVSAAAFAPAAVVAAPGAGGAGAAADEAPAEKTEFDVVIEEVPSSARIASIKVVRALTNLALKEAKDLIEGLPKK 158
BLAST of EY660488 vs. ExPASy Swiss-Prot
Match: RK122_ARATH (50S ribosomal protein L12-2, chloroplastic OS=Arabidopsis thaliana GN=RPL12B PE=2 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 3.272e-18 Identity = 58/142 (40.85%), Postives = 78/142 (54.93%), Query Frame = 1 Query: 157 FPSYPLP-------------TQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKK 543 FPS PL T ++RA +L P+ AV+ P+KI+K+ +EISSLTL+E LVDY+QDK +T FDVVI++VP RIAVI A+R +T+L+L E+K+LIEG PKK Sbjct: 27 FPSRPLSIEFPFSFGVSSSSTLSHRAIYLHPISAVKTPKKIKKIGSEISSLTLEESRILVDYVQDKFGVSILFSAPAAAALPPPLDNGGATASVER--QTTFDVVINDVPRGNRIAVITAIRAMTSLSLSESKELIEGFPKK 166
BLAST of EY660488 vs. ExPASy Swiss-Prot
Match: RK121_SECCE (50S ribosomal protein L12-1, chloroplastic OS=Secale cereale GN=RPL12-1 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.770e-17 Identity = 58/125 (46.40%), Postives = 73/125 (58.40%), Query Frame = 1 Query: 169 PLPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKK 543 P+ + RA+ + A E+P+ +E L I+ LTL+E NLVD+LQ++L +TEFDVVI+EVPS+ARIA IK VR LTNLALKEAKDLIEGLPKK Sbjct: 31 PVANRRRRAAAVAST-ATESPKVLE-LGDAIAGLTLEEARNLVDHLQERLCVSAASFPPAAAGLRAAAVEEAPVE------QTEFDVVIEEVPSSARIATIKIVRALTNLALKEAKDLIEGLPKK 147
BLAST of EY660488 vs. ExPASy Swiss-Prot
Match: RK122_SECCE (50S ribosomal protein L12-2, chloroplastic OS=Secale cereale GN=RPL12-2 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 3.618e-17 Identity = 56/124 (45.16%), Postives = 66/124 (53.23%), Query Frame = 1 Query: 172 LPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKK 543 LP R V K+ +L I+ LTL+E NLVD+LQ++L +TEFDVVI+EVPS+ARIA IK VR LTNLALKEAKDLIEGLPKK Sbjct: 30 LPVANRRRRAAAVASTVTESPKVLELGDAIAGLTLEEARNLVDHLQERLCVSAASFPPAAAGLRAAAVEEAPVE------QTEFDVVIEEVPSSARIATIKIVRALTNLALKEAKDLIEGLPKK 147
BLAST of EY660488 vs. ExPASy Swiss-Prot
Match: RK12_CHAVU (50S ribosomal protein L12, chloroplastic OS=Chara vulgaris GN=rpl12 PE=3 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 2.271e-11 Identity = 40/101 (39.60%), Postives = 54/101 (53.47%), Query Frame = 1 Query: 238 IEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPK 540 + +L I SLTLQE+ D LQD+L KTEFD++++EVPS++RI VIK +R++TN LKEAK+ IE LPK Sbjct: 9 LNQLLNAIKSLTLQEIKIFTDKLQDELGISSDNLYSSRGILTESTSHNKEVEEIDE--KTEFDIILEEVPSSSRITVIKVIRSITNSGLKEAKEFIEALPK 107 The following BLAST results are available for this feature:
BLAST of EY660488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY660488 ID=EY660488; Name=EY660488; organism=Citrus sinensis; type=EST; length=545bpback to top |