EY660488

Overview
NameEY660488
Unique NameEY660488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660488 vs. ExPASy Swiss-Prot
Match: RK12_NICSY (50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.950e-28
Identity = 74/137 (54.01%), Postives = 85/137 (62.04%), Query Frame = 1
Query:  133 PYLKQFLKFPSYPLPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKK 543
            P+ K+ L+FP      Q  RA+ LRPL AVEAPEK+ +L  EIS+LTL +   LV+YLQDKL                               KTEFDVVIDEVPSNARIA IKAVR LT+LALKEAK+LIEGLPKK
Sbjct:   26 PFPKKTLEFPIRTPKLQNRRATFLRPLAAVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAAEAPAVVEE---KTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKK 159          
BLAST of EY660488 vs. ExPASy Swiss-Prot
Match: RK121_ARATH (50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana GN=RPL12A PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.325e-27
Identity = 71/122 (58.20%), Postives = 83/122 (68.03%), Query Frame = 1
Query:  178 TQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKK 543
            T T+RA+HLRP+ AVEAPEKIEK+ +EISSLTL+E   LVDYLQDK                                +TEFDVVI+EVPS++RIAVIKAVR LT+LALKEAK+LIEGLPKK
Sbjct:   46 TLTHRATHLRPIAAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGGAAAVVEE---QTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKK 164          
BLAST of EY660488 vs. ExPASy Swiss-Prot
Match: RK12_TOBAC (50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum GN=RPL12 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.857e-27
Identity = 73/137 (53.28%), Postives = 84/137 (61.31%), Query Frame = 1
Query:  133 PYLKQFLKFPSYPLPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKK 543
            P+ K+ L+FP         RA+ LRPL AVEAPEK+ +L  EIS+LTL +   LV+YLQDKL                               KTEFDVVIDEVPSNARIA IKAVR LT+LALKEAK+LIEGLPKK
Sbjct:   26 PFPKKALEFPIRTPKLHHRRATFLRPLAAVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAAEAPAVVEE---KTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKK 159          
BLAST of EY660488 vs. ExPASy Swiss-Prot
Match: RK123_ARATH (50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.500e-26
Identity = 70/131 (53.44%), Postives = 86/131 (65.65%), Query Frame = 1
Query:  151 LKFPSYPLPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKK 543
            ++FP     + ++RA +LRP+ AVEAPEKIEK+ +EISSLTL+E   LVDYLQDK                                +TEFDVVI+EVPS++RIAVIKAVR LT+LALKEAK+LIEGLPKK
Sbjct:   33 IEFPFRLSSSSSHRAINLRPISAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGGAAAVVEE---QTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKK 160          
BLAST of EY660488 vs. ExPASy Swiss-Prot
Match: RK12_SPIOL (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea GN=RPL12 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 4.264e-26
Identity = 72/141 (51.06%), Postives = 86/141 (60.99%), Query Frame = 1
Query:  133 PYLKQFLKFP----SYPLPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKK 543
            P   Q L+FP    + P+   + R + LRP+ AVEAPEKIE+L T++S LTL+E   LVD+LQDKL                               KTEFDV IDEVPSNARI+VIKAVR LT+L LKEAK+LIEGLPKK
Sbjct:   25 PKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAVEAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVEE---KTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKK 162          
BLAST of EY660488 vs. ExPASy Swiss-Prot
Match: RK12_ORYSJ (50S ribosomal protein L12, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL12-2 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.506e-18
Identity = 58/125 (46.40%), Postives = 70/125 (56.00%), Query Frame = 1
Query:  169 PLPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKK 543
            P   +  RA  +    A E+P+ +E L   I+ LTL+E   LVD+LQ++L                               KTEFDVVI+EVPS+ARIA IK VR LTNLALKEAKDLIEGLPKK
Sbjct:   35 PSRARPRRAVAVVASTATESPKVLE-LGDAIAGLTLEEARGLVDHLQERLGVSAAAFAPAAVVAAPGAGGAGAAADEAPAEKTEFDVVIEEVPSSARIASIKVVRALTNLALKEAKDLIEGLPKK 158          
BLAST of EY660488 vs. ExPASy Swiss-Prot
Match: RK122_ARATH (50S ribosomal protein L12-2, chloroplastic OS=Arabidopsis thaliana GN=RPL12B PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.272e-18
Identity = 58/142 (40.85%), Postives = 78/142 (54.93%), Query Frame = 1
Query:  157 FPSYPLP-------------TQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKK 543
            FPS PL              T ++RA +L P+ AV+ P+KI+K+ +EISSLTL+E   LVDY+QDK                                +T FDVVI++VP   RIAVI A+R +T+L+L E+K+LIEG PKK
Sbjct:   27 FPSRPLSIEFPFSFGVSSSSTLSHRAIYLHPISAVKTPKKIKKIGSEISSLTLEESRILVDYVQDKFGVSILFSAPAAAALPPPLDNGGATASVER--QTTFDVVINDVPRGNRIAVITAIRAMTSLSLSESKELIEGFPKK 166          
BLAST of EY660488 vs. ExPASy Swiss-Prot
Match: RK121_SECCE (50S ribosomal protein L12-1, chloroplastic OS=Secale cereale GN=RPL12-1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.770e-17
Identity = 58/125 (46.40%), Postives = 73/125 (58.40%), Query Frame = 1
Query:  169 PLPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKK 543
            P+  +  RA+ +    A E+P+ +E L   I+ LTL+E  NLVD+LQ++L                               +TEFDVVI+EVPS+ARIA IK VR LTNLALKEAKDLIEGLPKK
Sbjct:   31 PVANRRRRAAAVAST-ATESPKVLE-LGDAIAGLTLEEARNLVDHLQERLCVSAASFPPAAAGLRAAAVEEAPVE------QTEFDVVIEEVPSSARIATIKIVRALTNLALKEAKDLIEGLPKK 147          
BLAST of EY660488 vs. ExPASy Swiss-Prot
Match: RK122_SECCE (50S ribosomal protein L12-2, chloroplastic OS=Secale cereale GN=RPL12-2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.618e-17
Identity = 56/124 (45.16%), Postives = 66/124 (53.23%), Query Frame = 1
Query:  172 LPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKK 543
            LP    R         V    K+ +L   I+ LTL+E  NLVD+LQ++L                               +TEFDVVI+EVPS+ARIA IK VR LTNLALKEAKDLIEGLPKK
Sbjct:   30 LPVANRRRRAAAVASTVTESPKVLELGDAIAGLTLEEARNLVDHLQERLCVSAASFPPAAAGLRAAAVEEAPVE------QTEFDVVIEEVPSSARIATIKIVRALTNLALKEAKDLIEGLPKK 147          
BLAST of EY660488 vs. ExPASy Swiss-Prot
Match: RK12_CHAVU (50S ribosomal protein L12, chloroplastic OS=Chara vulgaris GN=rpl12 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.271e-11
Identity = 40/101 (39.60%), Postives = 54/101 (53.47%), Query Frame = 1
Query:  238 IEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPK 540
            + +L   I SLTLQE+    D LQD+L                               KTEFD++++EVPS++RI VIK +R++TN  LKEAK+ IE LPK
Sbjct:    9 LNQLLNAIKSLTLQEIKIFTDKLQDELGISSDNLYSSRGILTESTSHNKEVEEIDE--KTEFDIILEEVPSSSRITVIKVIRSITNSGLKEAKEFIEALPK 107          
The following BLAST results are available for this feature:
BLAST of EY660488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RK12_NICSY5.950e-2854.0150S ribosomal protein L12, chloroplastic OS=Nicoti... [more]
RK121_ARATH1.325e-2758.2050S ribosomal protein L12-1, chloroplastic OS=Arab... [more]
RK12_TOBAC3.857e-2753.2850S ribosomal protein L12, chloroplastic OS=Nicoti... [more]
RK123_ARATH2.500e-2653.4450S ribosomal protein L12-3, chloroplastic OS=Arab... [more]
RK12_SPIOL4.264e-2651.0650S ribosomal protein L12, chloroplastic OS=Spinac... [more]
RK12_ORYSJ2.506e-1846.4050S ribosomal protein L12, chloroplastic OS=Oryza ... [more]
RK122_ARATH3.272e-1840.8550S ribosomal protein L12-2, chloroplastic OS=Arab... [more]
RK121_SECCE2.770e-1746.4050S ribosomal protein L12-1, chloroplastic OS=Seca... [more]
RK122_SECCE3.618e-1745.1650S ribosomal protein L12-2, chloroplastic OS=Seca... [more]
RK12_CHAVU2.271e-1139.6050S ribosomal protein L12, chloroplastic OS=Chara ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-022-G05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660488 ID=EY660488; Name=EY660488; organism=Citrus sinensis; type=EST; length=545bp
CCTTTTGCTATCTTCGTTTCTCACTCTCTTCTGCTCCTCAAACCTCCAAA
ATCCAAAAAAATGGCAACAATCTCAGCAACGGCGGCGGCAACAACAACAC
TCACTCTCCGTTCACGCCCCACTCCCTCCTCCCCTTACCTCAAACAATTC
CTTAAATTCCCATCTTACCCTCTCCCCACCCAAACCAACCGAGCTTCTCA
CTTGCGCCCCCTTTGCGCTGTCGAAGCCCCCGAGAAAATCGAAAAGCTCG
CTACCGAGATCTCTTCCCTCACTCTCCAAGAAGTCTGCAACCTCGTCGAC
TACCTCCAGGATAAGCTCGGCGTCTCCGCCGCCGCCTTCGCCCCCGCCGC
CGCAGTGGGTGTCGCCCCCGGTGCCCCCGGAGCCGAAGCGCCTGCTTCCG
TGGAGGAGGAGAAGACGGAGTTCGACGTCGTCATTGACGAGGTGCCCAGT
AATGCGAGAATCGCGGTCATTAAGGCCGTGAGAACGCTGACGAACTTGGC
CTTGAAAGAGGCTAAGGACCTTATTGAAGGGTTGCCTAAGAAGTT
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