EY660487

Overview
NameEY660487
Unique NameEY660487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660487 vs. ExPASy Swiss-Prot
Match: SSG1_MANES (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Manihot esculenta GN=WAXY PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.786e-27
Identity = 65/168 (38.69%), Postives = 93/168 (55.36%), Query Frame = 1
Query:   73 LETPKIHES*QKQIFTLDHMEENDIFVANDWNTSLIPCYLTTMYKPKGMYNCAKVAFCYPQYCLPKKICI*GFWTSQPSSSIQKLF*LY*WIQ*TWERKNSPLR*KLRIL*SDVVFPVSPHYAQELVSGQDKGLELDNIIRTPGIKGIVNGLHAQERNSLTDKYIRVN 576
            LE P++      + F+  + EE   F+ANDW+T+L+PCYL  +Y+P G+Y  AKVAFC        +     F         +  F      +   + +      K  IL SD V  VSP+YAQE++SG ++G+ELDN IR  GI GI+NG+  QE N +TDKYI ++
Sbjct:  205 LEAPRVLNLNSSKNFSGPYGEEV-AFIANDWHTALLPCYLKAIYQPMGIYKHAKVAFCIHNIAYQGRFAFSDFPRLNLPDKFKSSFDFIDGYEKPVKGRKINWM-KAGILESDRVLTVSPYYAQEVISGVERGVELDNFIRKTGIAGIINGMDVQEWNPVTDKYIDIH 370          

HSP 2 Score: 31.5722 bits (70), Expect = 6.786e-27
Identity = 14/22 (63.64%), Postives = 17/22 (77.27%), Query Frame = 3
Query:  576 YDASTVMDAKPLRKEPSKENLG 641
            YDA+TVMDAKPL KE  +  +G
Sbjct:  371 YDATTVMDAKPLLKEALQAEVG 392          
BLAST of EY660487 vs. ExPASy Swiss-Prot
Match: SSG1_ANTMA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus GN=WAXY PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.277e-26
Identity = 68/168 (40.48%), Postives = 92/168 (54.76%), Query Frame = 1
Query:   73 LETPKIHES*QKQIFTLDHMEENDIFVANDWNTSLIPCYLTTMYKPKGMYNCAKVAFCYPQYCLPKKICI*GFWTSQPSSSIQKLF*LY*WIQ*TWERKNSPLR*KLRIL*SDVVFPVSPHYAQELVSGQDKGLELDNIIRTPGIKGIVNGLHAQERNSLTDKYIRVN 576
            LE P++      + F+  + E+  +FVANDW+T+L+PCYL +MY+ KGMY  AKVAFC        +     F         +  F  +   +   + +      K  IL SD V  VSP+YA ELVSG +KG+ELDN+I    I GIVNG+  QE N  TDK+I  N
Sbjct:  205 LEAPRVLNLTSSKYFSGPYGEDV-VFVANDWHTALLPCYLKSMYQSKGMYLHAKVAFCIHNIAYQGRFGSSDFCLLNLPDQFKSSFDFFDGYEKPVKGRKINWM-KAGILESDRVVTVSPYYAMELVSGAEKGVELDNVIAKTSITGIVNGMDTQEWNPATDKHIDTN 370          

HSP 2 Score: 28.8758 bits (63), Expect = 7.277e-26
Identity = 13/22 (59.09%), Postives = 16/22 (72.73%), Query Frame = 3
Query:  576 YDASTVMDAKPLRKEPSKENLG 641
            YD +TVMDAKPL KE  +  +G
Sbjct:  371 YDITTVMDAKPLLKEALQAAVG 392          
BLAST of EY660487 vs. ExPASy Swiss-Prot
Match: SSG1_PEA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.385e-26
Identity = 72/168 (42.86%), Postives = 97/168 (57.74%), Query Frame = 1
Query:   73 LETPKIHES*QKQIFTLDHMEENDIFVANDWNTSLIPCYLTTMYKPKGMYNCAKVAFCYPQYCLPKKICI*GFWTSQPSSSIQKLF*LY*WIQ*TWERKNSPLR*KLRIL*SDVVFPVSPHYAQELVSGQDKGLELDNIIRTPGIKGIVNGLHAQERNSLTDKYIRVN 576
            LE P++      + F+  + E+  IFVANDW+++LIPCYL +MYK +G+Y  AKVAFC        +     F         +  F          E K      K  IL SD VF VSPHYA+EL+SG+D+G+ELDNIIR+ GI GIVNG+  +E +  TD+YI V+
Sbjct:  200 LEAPRVLNLNSSKYFSGPYGEDV-IFVANDWHSALIPCYLKSMYKSRGLYKNAKVAFCIHNIAYQGRNAFSDFSLLNLPDEFRSSFDFIDGYNKPCEGKKINWM-KAGILESDQVFTVSPHYAKELISGEDRGVELDNIIRSTGIIGIVNGMDNREWSPQTDRYIDVH 365          
BLAST of EY660487 vs. ExPASy Swiss-Prot
Match: SSG1_SOLTU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum GN=WAXY PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.086e-23
Identity = 66/167 (39.52%), Postives = 89/167 (53.29%), Query Frame = 1
Query:   73 LETPKIHES*QKQIFTLDHMEENDIFVANDWNTSLIPCYLTTMYKPKGMYNCAKVAFCYPQYCLPKKICI*GFWTSQPSSSIQKLF*LY*WIQ*TWERKNSPLR*KLRIL*SDVVFPVSPHYAQELVSGQDKGLELDNIIRTPGIKGIVNGLHAQERNSLTDKYIRV 573
            LE PK+        F+  + E+  +F+ANDW+T+LIPCYL +MY+ +G+Y  AKVAFC        +     F         +  F      +   + +      K  IL S  V  VSP+YAQELVS  DKG+ELD+++R   I GIVNG+  QE N  TDKY  V
Sbjct:  204 LEAPKVLNLNSSNYFSGPYGEDV-LFIANDWHTALIPCYLKSMYQSRGIYLNAKVAFCIHNIAYQGRFSFSDFPLLNLPDEFRGSFDFIDGYEKPVKGRKINWM-KAGILESHRVVTVSPYYAQELVSAVDKGVELDSVLRKTCITGIVNGMDTQEWNPATDKYTDV 368          

HSP 2 Score: 29.261 bits (64), Expect = 1.086e-23
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 3
Query:  573 QYDASTVMDAKPLRKEPSKENLG 641
            +YD +TVMDAKPL KE  +  +G
Sbjct:  369 KYDITTVMDAKPLLKEALQAAVG 391          
BLAST of EY660487 vs. ExPASy Swiss-Prot
Match: SSG1_IPOBA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Ipomoea batatas GN=WAXY PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.112e-23
Identity = 67/173 (38.73%), Postives = 91/173 (52.60%), Query Frame = 1
Query:   73 LETPKIHES*QKQIFTLDHMEENDIFVANDWNTSLIPCYLTTMYKPKGMYNCAKVAFCYPQYCLPKKICI*GFWTSQPSSSIQKLF*LY*WIQ*TWERKNSPLR*------KLRIL*SDVVFPVSPHYAQELVSGQDKGLELDNIIRTPGIKGIVNGLHAQERNSLTDKYIRV 573
            LE P++        F+  + E+  +FVANDW+T+L+PCYL TMY+ +G+Y  AKVAFC        +     F         +  F          +  + P++       K  I  +D VF VSP+YA+ELVS   KG+ELDN IR  GI GI NG+  QE N  TDKY+ V
Sbjct:  205 LEAPRVLNLNSSNYFSGPYGEDV-VFVANDWHTALLPCYLKTMYQSRGIYMNAKVAFCIHNIAYQGRFAFSDFSLLNLPDEYKGSFDFI-------DGYDKPVKGRKINWMKAGIREADRVFTVSPNYAKELVSCVSKGVELDNHIRDCGITGICNGMDTQEWNPATDKYLAV 369          

HSP 2 Score: 26.9498 bits (58), Expect = 3.112e-23
Identity = 12/23 (52.17%), Postives = 16/23 (69.57%), Query Frame = 3
Query:  573 QYDASTVMDAKPLRKEPSKENLG 641
            +YD +TVM AKPL KE  +  +G
Sbjct:  370 KYDITTVMQAKPLLKEALQAAVG 392          
BLAST of EY660487 vs. ExPASy Swiss-Prot
Match: SSG1_ARATH (Probable granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=WAXY PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.239e-21
Identity = 59/167 (35.33%), Postives = 89/167 (53.29%), Query Frame = 1
Query:   73 LETPKIHES*QKQIFTLDHMEENDIFVANDWNTSLIPCYLTTMYKPKGMYNCAKVAFCYPQYCLPKKICI*GFWTSQPSSSIQKLF*LY*WIQ*TWERKNSPLR*KLRIL*SDVVFPVSPHYAQELVSGQDKGLELDNIIRTPGIKGIVNGLHAQERNSLTDKYIRV 573
            LE P++      + F+  + E+  +FVANDW+T+L+PCYL +MY+ +G+Y  AKV FC        +     +       S +  F      +   + +      K  IL +  V  VSP+YAQEL+SG D+G+EL   +R   + GI+NG+  QE N  TDKYI +
Sbjct:  207 LEAPQVLNLNSSKYFSGPYGEDV-VFVANDWHTALLPCYLKSMYQSRGVYMNAKVVFCIHNIAYQGRFAFDDYSLLNLPISFKSSFDFMDGYEKPVKGRKINWM-KAAILEAHRVLTVSPYYAQELISGVDRGVELHKYLRMKTVSGIINGMDVQEWNPSTDKYIDI 371          

HSP 2 Score: 26.5646 bits (57), Expect = 1.239e-21
Identity = 12/23 (52.17%), Postives = 16/23 (69.57%), Query Frame = 3
Query:  573 QYDASTVMDAKPLRKEPSKENLG 641
            +YD +TV DAKPL KE  +  +G
Sbjct:  372 KYDITTVTDAKPLIKEALQAAVG 394          
BLAST of EY660487 vs. ExPASy Swiss-Prot
Match: SSG1B_HORVU (Granule-bound starch synthase 1b, chloroplastic/amyloplastic (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.194e-21
Identity = 66/169 (39.05%), Postives = 95/169 (56.21%), Query Frame = 1
Query:   73 LETPKIHES*QKQIFTLDHMEENDIFVANDWNTSLIPCYLTTMYKPKGMYNCAKVAFCYPQYCLPKKICI*GF-WTSQPSSSIQKLF*LY*WIQ*TWERKNSPLR*KLRIL*SDVVFPVSPHYAQELVSGQDKGLELDNIIRTPGIK-GIVNGLHAQERNSLTDKYIRV 573
            LE P++      + F+  +  EN +FVANDW+T+++PCYL +MYK  G+Y  AKVAFC        +     F   + P S +     +   ++    RK + +  K  I   DVV  VSPHY +EL SG +KG+ELD ++RT  ++ GIVNG+   + N  TDKYI V
Sbjct:  161 LEAPRVLNLNNSEYFSGPY-GENVVFVANDWHTAVLPCYLKSMYKQNGIYENAKVAFCIHNIAYQGRFPRADFELLNLPESFMPSFDFVDGHVKPVVGRKINWM--KAGITECDVVLTVSPHYVKELTSGPEKGVELDGVLRTKPLETGIVNGMDVIDWNPATDKYISV 326          
BLAST of EY660487 vs. ExPASy Swiss-Prot
Match: SSG1_WHEAT (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WAXY PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.762e-19
Identity = 56/147 (38.10%), Postives = 78/147 (53.06%), Query Frame = 1
Query:  136 ENDIFVANDWNTSLIPCYLTTMYKPKGMYNCAKVAFCYPQYCLPKKICI*GFWTSQPSSSIQKLF*LY*WIQ*TWERKNSPLR*KLRIL*SDVVFPVSPHYAQELVSGQDKGLELDNIIRTPGIKGIVNGLHAQERNSLTDKYIRVN 576
            E+ +FV NDW+T L+ CYL + Y+  G+Y  AKVAFC        +     F         +  F          E +      K  IL +D V  VSP+YA+EL+SG+ +G ELDNI+R  GI GIVNG+   E + + DK++ VN
Sbjct:  231 EDVVFVCNDWHTGLLACYLKSNYQSNGIYRTAKVAFCIHNISYQGRFSFDDFAQLNLPDRFKSSFDFIDGYDKPVEGRKINWM-KAGILQADKVLTVSPYYAEELISGEARGCELDNIMRLTGITGIVNGMDVSEWDPIKDKFLTVN 376          
BLAST of EY660487 vs. ExPASy Swiss-Prot
Match: SSG1_HORVU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Hordeum vulgare GN=WAXY PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.005e-19
Identity = 61/168 (36.31%), Postives = 85/168 (50.60%), Query Frame = 1
Query:   73 LETPKIHES*QKQIFTLDHMEENDIFVANDWNTSLIPCYLTTMYKPKGMYNCAKVAFCYPQYCLPKKICI*GFWTSQPSSSIQKLF*LY*WIQ*TWERKNSPLR*KLRIL*SDVVFPVSPHYAQELVSGQDKGLELDNIIRTPGIKGIVNGLHAQERNSLTDKYIRVN 576
            LE P+I        F+  + E+  +FV NDW+T L+ CYL + Y+  G+Y  AKVAFC        +     F         +  F          E +      K  IL +D V  VSP+YA+EL+SG+ +G ELDNI+R  GI GIVNG+   E +   DK++ VN
Sbjct:  199 LEAPRILNLNNNPYFSGPYGEDV-VFVCNDWHTGLLACYLKSNYQSNGIYRTAKVAFCIHNISYQGRFSFDDFAQLNLPDRFKSSFDFIDGYDKPVEGRKINWM-KAGILQADKVLTVSPYYAEELISGEARGCELDNIMRLTGITGIVNGMDVSEWDPTKDKFLAVN 364          
BLAST of EY660487 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa GN=WAXY PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.340e-18
Identity = 57/144 (39.58%), Postives = 74/144 (51.39%), Query Frame = 1
Query:  136 ENDIFVANDWNTSLIPCYLTTMYKPKGMYNCAKVAFCYPQYCLPKKICI*GFWTSQPSSSIQKLF*LY*WIQ*TWERKNSPLR*KLRIL*SDVVFPVSPHYAQELVSGQDKGLELDNIIRTPGIKGIVNGLHAQERNSLTDKYI 567
            E+ +FV NDW+T  +P YL   Y+P G+Y  AKVAFC        +     +     S   +  F          E +      K  IL SD V  VSP+YA+EL+SG  +G ELDNI+R  GI GIVNG+   E +   DKYI
Sbjct:  223 EDVVFVCNDWHTGPLPSYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFKSSFDFIDGYDTPVEGRKINWM-KAGILESDRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYI 365          

HSP 2 Score: 75.0998 bits (183), Expect = 5.490e-13
Identity = 45/97 (46.39%), Postives = 55/97 (56.70%), Query Frame = 2
Query:   86 KFMNLNRNKYLLWTIWKKMTFLL--LMTGILPLSLVT*LLCISPKGCTIVPKLLFVIHNIAYQRRFAFEDFGLLNLPAQFKSSFDFIDGYNKPGRGR 370
            + +NLN N Y   T  + + F+     TG LP  L        P G     K+ F IHNI+YQ RFAFED+  LNL  +FKSSFDFIDGY+ P  GR
Sbjct:  207 RILNLNNNPYFKGTYGEDVVFVCNDWHTGPLPSYLKN---NYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFKSSFDFIDGYDTPVEGR 300          
The following BLAST results are available for this feature:
BLAST of EY660487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SSG1_MANES6.786e-2738.69Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ANTMA7.277e-2640.48Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_PEA7.385e-2642.86Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SOLTU1.086e-2339.52Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_IPOBA3.112e-2338.73Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ARATH1.239e-2135.33Probable granule-bound starch synthase 1, chloropl... [more]
SSG1B_HORVU4.194e-2139.05Granule-bound starch synthase 1b, chloroplastic/am... [more]
SSG1_WHEAT1.762e-1938.10Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_HORVU3.005e-1936.31Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSA4.340e-1839.58Granule-bound starch synthase 1, chloroplastic/amy... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-022-G04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660487 ID=EY660487; Name=EY660487; organism=Citrus sinensis; type=EST; length=839bp
CCACGCGTCCGCTGAAACCTTTTTTTAAACTTTTTTAATTATCTTTGTTT
CCTAGAAGAGACAAAAAAAATACTTGAAACACCAAAAATTCATGAATCTT
AACAGAAACAAATATTTACTCTGGACCATATGGAAGAAAATGACATTTTT
GTTGCTAATGACTGGAATACTTCCCTTATCCCTTGTTACCTGACTACTAT
GTATAAGCCCAAAGGGATGTACAATTGTGCCAAAGTTGCTTTTTGTTATC
CACAATATTGCTTACCAAAGAAGATTTGCATTTGAGGATTTTGGACTTCT
CAACCTTCCAGCTCAATTCAAAAGCTCTTTTGACTTTATTGATGGATACA
ATAAACCTGGGAGAGGAAGAATAGTCCTCTGCGATGAAAGCTGCGAATAT
TATAATCAGACGTGGTCTTCCCTGTGAGCCCACACTATGCCCAAGAACTT
GTTTCTGGTCAAGACAAAGGACTAGAATTGGATAACATCATCCGTACCCC
TGGCATTAAGGGAATTGTGAACGGGTTGCACGCCCAGGAGAGGAACTCCT
TGACTGACAAATATATACGTGTCAATATGATGCTTCAACTGTGATGGATG
CCAAGCCTCTGCGGAAGGAGCCCTCCAAGGAGAATTTGGGTTGCCAGCGG
ATACAACATTCATGCATAGGCTTCATTGTTGACTGGAAGACCCAATGCTC
AGATATGCCTCCGCTGCCATTCCCATTTCATCAAAAGTATGTCAGATATT
TTTCTTGGTACTGGGAATTTTCCAAGTAGAGCCTCTTGGACAAATGAAAT
CCTGTACCTCAATATTCCCGAGGTTTACGGAATTCATAT
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