EY660453

Overview
NameEY660453
Unique NameEY660453
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY660453 vs. ExPASy Swiss-Prot
Match: RRFC_SPIOL (Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea GN=RRF PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.269e-18
Identity = 45/51 (88.24%), Postives = 51/51 (100.00%), Query Frame = 3 
Query:  447 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 599
            +VAVRNIRRDALK+YEKL+KEKKLSEDNVKDLS+DLQKLTDEYMKK++SIY
Sbjct:  211 KVAVRNIRRDALKSYEKLEKEKKLSEDNVKDLSADLQKLTDEYMKKVESIY 261
[Close]
BLAST of EY660453 vs. ExPASy Swiss-Prot
Match: RRFC_ORYSJ (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0570700 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.963e-17
Identity = 41/50 (82.00%), Postives = 50/50 (100.00%), Query Frame = 3 
Query:  447 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 596
            +VA+RNIRRDA+KAY+KL+KEKKLSEDNVKDLS+DLQK+TDEYMKKI++I
Sbjct:  206 KVAIRNIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAI 255
[Close]
BLAST of EY660453 vs. ExPASy Swiss-Prot
Match: RRFC_ORYSI (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_26546 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.963e-17
Identity = 41/50 (82.00%), Postives = 50/50 (100.00%), Query Frame = 3 
Query:  447 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 596
            +VA+RNIRRDA+KAY+KL+KEKKLSEDNVKDLS+DLQK+TDEYMKKI++I
Sbjct:  206 KVAIRNIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAI 255
[Close]
BLAST of EY660453 vs. ExPASy Swiss-Prot
Match: RRFC_DAUCA (Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota GN=RRF PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.551e-16
Identity = 40/51 (78.43%), Postives = 50/51 (98.04%), Query Frame = 3 
Query:  447 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 599
            +VA+RNIRRDA+K+Y+KL+KEKKLSEDNVKDLSSDLQK+ DEY+KK+DSI+
Sbjct:  167 KVALRNIRRDAIKSYDKLEKEKKLSEDNVKDLSSDLQKVIDEYIKKVDSIF 217
[Close]
BLAST of EY660453 vs. ExPASy Swiss-Prot
Match: RRFC_ARATH (Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana GN=RRF PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.456e-16
Identity = 41/51 (80.39%), Postives = 48/51 (94.12%), Query Frame = 3 
Query:  447 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 599
            +VA+RNIRRDALK+Y+KL+KEKKLSEDNVKDLSSDLQKL D YMKKI+ +Y
Sbjct:  215 KVALRNIRRDALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELY 265
The following BLAST results are available for this feature:
BLAST of EY660453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RRFC_SPIOL1.269e-1888.24Ribosome-recycling factor, chloroplastic OS=Spinac... [more]
RRFC_ORYSJ6.963e-1782.00Ribosome-recycling factor, chloroplastic OS=Oryza ... [more]
RRFC_ORYSI6.963e-1782.00Ribosome-recycling factor, chloroplastic OS=Oryza ... [more]
RRFC_DAUCA1.551e-1678.43Ribosome-recycling factor, chloroplastic (Fragment... [more]
RRFC_ARATH3.456e-1680.39Ribosome-recycling factor, chloroplastic OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-022-D04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660453 ID=EY660453; Name=EY660453; organism=Citrus sinensis; type=EST; length=900bp
CAGGAACTGTCAAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTAGT
TATGCTTCTTTTATTCACGATTTCATAGGTTTCTTCTCCTCTTTGTAATC
TATCTAATACTAAAGTTCAGATTTTCATTATCTTTTCAGTGCTTATAATT
TTCATGAAGGTAGATATCACAGGAAATCTGTACAAGACGGTGTTTTCTAA
ATTAAAGAAGTTTTTGGTCTAAAATTTATAGTTTGCTTTGACGAATGTAA
AGGTATTGGCATGAAATACTTTAAATTACTTTGAGAGGAGTTTCATTGTG
GTTTATCAGGGTACTAAGTCATAACCTGAGTACATGGATTTTAAAGTTGC
ATGTGTTGGTTAATTTTTATACACAAATCTCTGTGTTTACTGATATAAAT
TCCCCGGTTTTGTCATCTTTGCTGCACTGCCCCCATCAATCATTTGCAGG
TGGCAGTTAGGAATATAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTT
CAGAAGGAGAAGAAGCTCTCTGAAGACAATGTGAAGGACTTGTCAAGTGA
TTTACAGAAACTAACAGATGAGTATATGAAGAAGATTGATAGCATCTACA
AACAGAAAGAGAAGGAGTTGTTGAAGGTTTAATGATTGTTACACACAAAT
GTAATGGTGAGCTCTCTAGTGAATCTCAGAATGCACTCTTTATTTTTTGG
NTTGCCCATAGAATGGCATTTTTTGATACTAATGGGAGACACGGTGGATA
TTTTGNTATGAAATGAAATGTGGAAATAGTTATTCTAGACTCTTTGTAAA
ATTGTTGGATACAACCTGTGACCTTTTTACTGGGAACCTGAAAAGGACCC
CGTACAATAGGACCATATAATTGAATGCCTGCTAAACCTGGGATGTTCTG
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