EY660437

Overview
NameEY660437
Unique NameEY660437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY660437 vs. ExPASy Swiss-Prot
Match: HAT5_ARATH (Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.441e-13
Identity = 48/109 (44.04%), Postives = 64/109 (58.72%), Query Frame = 3 
Query:  516 RSMVSFEDVHLANGSNNRPFFRPFDRDENGDEDFDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKFNWQKTLACSLDRLR-FGSKTAASXETKQLQKDYDVLQT 839
            RSM++ E+      S  RPFF     D   D+ +D+    PEKKRRLT +QV  LEKSFE ENKLEPERK    K L     ++  +     A  +TKQL++DYD+L++
Sbjct:   34 RSMMNMEET-----SKRRPFFSS-PEDLYDDDFYDDQL--PEKKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKS 134
[Close]
BLAST of EY660437 vs. ExPASy Swiss-Prot
Match: ATB16_ARATH (Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana GN=ATHB-16 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.090e-11
Identity = 42/98 (42.86%), Postives = 56/98 (57.14%), Query Frame = 3 
Query:  555 GSNNRPFFRPFDRDENGDEDFDEYFHQ---PEKKRRLTVDQVQFLEKSFEVENKLEPERKFNWQKTLACSLDRLR-FGSKTAASXETKQLQKDYDVLQ 836
            GSN +     +D D    E++    H     EKKRRL VDQV+ LEK+FE+ENKLEPERK    + L     ++  +     A  +TKQL+KDY VL+
Sbjct:   27 GSNYQSMLEGYDEDATLIEEYSGNHHHMGLSEKKRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLK 124
The following BLAST results are available for this feature:
BLAST of EY660437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HAT5_ARATH4.441e-1344.04Homeobox-leucine zipper protein HAT5 OS=Arabidopsi... [more]
ATB16_ARATH7.090e-1142.86Homeobox-leucine zipper protein ATHB-16 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-022-B11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660437 ID=EY660437; Name=EY660437; organism=Citrus sinensis; type=EST; length=873bp
CCACGCGTCCGAAAGGGGGAAAACATAGGGGAATAAACTATCTTCATATC
CACTTCCACTTCCACTTCCACTTCCTCTTCTTCTTGTCCACTTTGCTTCT
CCAAACTTCAAACTTCACACTTCTCCTGAAACCTCTCACGAAACACTCTT
TCAAATCCCTCTATTCTGAGTGATGGGTATGAGCAGCCGCTGCTCCCACA
CATCTCACATAACCGAGATCATAATCACCAGCTTCTTTCGTCATAAGTCT
TAAATTAAATTTCTTCTCGACTGTTGAATCATCGCATCATCTTTAGCGAT
GGCTGCTTAAAAGATTAAGAATATTAGTTTTAAGTTAAATGGCGGGTGGG
AGGATGTATAATCAAAATAGTTCTAGTGGTGGTGGTAGTGGTGGTGGTAC
TTCAAGTCTGTCCTTTCTGATTCAAAGCCAAAAGGGTTCTTGCTCTAACT
CTCAGAATCTCGATGCTTCGTTCCTCTCTGGCCCTTCTCCTTCTCCTTCT
CCTTTTCTTGGATCAAGATCCATGGTGAGCTTTGAAGATGTGCACTTAGC
AAATGGATCCAATAACAGGCCATTTTTCCGCCCATTTGATCGTGATGAAA
ATGGGGATGAGGACTTTGATGAGTACTTTCATCAACCTGAAAAGAAAAGA
CGGCTTACGGTTGATCAAGTCCAGTTTCTTGAAAAAAGCTTCGAAGTAGA
GAACAAGCTTGAACCCGAAAGGAAATTCAACTGGCAAAAGACCTTGGCTT
GCAGCCTAGACAGGTTGCGATTTGGTTCCAAAACCGCGGCCTCGNTGGAG
ACTAAACAGCTCCAGAAAGATTACGATGTATTGCAAACAGCTATATAACC
TTAAGGCGATATGACATCTCTTC
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