EY660426

Overview
NameEY660426
Unique NameEY660426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY660426 vs. ExPASy Swiss-Prot
Match: RNF13_RAT (RING finger protein 13 OS=Rattus norvegicus GN=Rnf13 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.961e-12
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 3 
Query:  264 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 419
            CAICLE+Y  G+KLRILPC H +H  CVD WLT  +  CPVCK+    S G+
Sbjct:  240 CAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGD 291
[Close]
BLAST of EY660426 vs. ExPASy Swiss-Prot
Match: RNF13_MOUSE (RING finger protein 13 OS=Mus musculus GN=Rnf13 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.961e-12
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 3 
Query:  264 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 419
            CAICLE+Y  G+KLRILPC H +H  CVD WLT  +  CPVCK+    S G+
Sbjct:  240 CAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGD 291
[Close]
BLAST of EY660426 vs. ExPASy Swiss-Prot
Match: RN167_RAT (E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.867e-12
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 3 
Query:  264 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 419
            CAICL++Y  G+KLRILPC H +H+ CVD WLT  R  CP+CK+      G+
Sbjct:  230 CAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGD 281
[Close]
BLAST of EY660426 vs. ExPASy Swiss-Prot
Match: RN167_MOUSE (E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.051e-12
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 3 
Query:  264 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 419
            CAICL++Y  G+KLR+LPC H +H+ CVD WLT  R  CP+CK+      G+
Sbjct:  230 CAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGD 281
[Close]
BLAST of EY660426 vs. ExPASy Swiss-Prot
Match: RN167_HUMAN (E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.051e-12
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 3 
Query:  264 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 419
            CAICL++Y  G+KLR+LPC H +H+ CVD WLT  R  CP+CK+      G+
Sbjct:  230 CAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGD 281
[Close]
BLAST of EY660426 vs. ExPASy Swiss-Prot
Match: RNF13_PONAB (RING finger protein 13 OS=Pongo abelii GN=RNF13 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.597e-12
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 3 
Query:  264 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 419
            CAICL++Y  G+KLRILPC H +H  CVD WLT  +  CPVCK+    S G+
Sbjct:  240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGD 291
[Close]
BLAST of EY660426 vs. ExPASy Swiss-Prot
Match: RNF13_HUMAN (RING finger protein 13 OS=Homo sapiens GN=RNF13 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.597e-12
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 3 
Query:  264 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 419
            CAICL++Y  G+KLRILPC H +H  CVD WLT  +  CPVCK+    S G+
Sbjct:  240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGD 291
[Close]
BLAST of EY660426 vs. ExPASy Swiss-Prot
Match: RNF13_CHICK (RING finger protein 13 OS=Gallus gallus GN=RNF13 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.597e-12
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 3 
Query:  264 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 419
            CAICL++Y  G+KLRILPC H +H  CVD WLT  +  CPVCK+    S G+
Sbjct:  240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGD 291
[Close]
BLAST of EY660426 vs. ExPASy Swiss-Prot
Match: RNF13_BOVIN (RING finger protein 13 OS=Bos taurus GN=RNF13 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.597e-12
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 3 
Query:  264 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 419
            CAICL++Y  G+KLRILPC H +H  CVD WLT  +  CPVCK+    S G+
Sbjct:  240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGD 291
[Close]
BLAST of EY660426 vs. ExPASy Swiss-Prot
Match: GOLI_DROME (Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 9.526e-11
Identity = 37/123 (30.08%), Postives = 62/123 (50.41%), Query Frame = 3 
Query:   30 IPSFENSAWSIMAISFISLLAMSAVLATCFFVXXXXXXXXXXXXXXXQEFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD 398
            I S   ++   ++ISFI L+ +S V    +++               +    ++++ +  +P+       E +  S  CAIC+E Y   + +RILPC+H+FH  C+D WL   RT CP+CK D
Sbjct:  227 ISSLNRTSVLFVSISFIVLMIISLVWLIFYYIQRFRYMQAKDQQS--RNLCSVTKKAIMKIPTKTGKFSDEKDLDSDCCAICIEAYKPTDTIRILPCKHEFHKNCIDPWLIEHRT-CPMCKLD 346
The following BLAST results are available for this feature:
BLAST of EY660426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RNF13_RAT2.961e-1257.69RING finger protein 13 OS=Rattus norvegicus GN=Rnf... [more]
RNF13_MOUSE2.961e-1257.69RING finger protein 13 OS=Mus musculus GN=Rnf13 PE... [more]
RN167_RAT3.867e-1253.85E3 ubiquitin-protein ligase RNF167 OS=Rattus norve... [more]
RN167_MOUSE5.051e-1251.92E3 ubiquitin-protein ligase RNF167 OS=Mus musculus... [more]
RN167_HUMAN5.051e-1251.92E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens... [more]
RNF13_PONAB6.597e-1255.77RING finger protein 13 OS=Pongo abelii GN=RNF13 PE... [more]
RNF13_HUMAN6.597e-1255.77RING finger protein 13 OS=Homo sapiens GN=RNF13 PE... [more]
RNF13_CHICK6.597e-1255.77RING finger protein 13 OS=Gallus gallus GN=RNF13 P... [more]
RNF13_BOVIN6.597e-1255.77RING finger protein 13 OS=Bos taurus GN=RNF13 PE=2... [more]
GOLI_DROME9.526e-1130.08Protein goliath OS=Drosophila melanogaster GN=gol ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-022-A12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660426 ID=EY660426; Name=EY660426; organism=Citrus sinensis; type=EST; length=889bp
CTGGTTCAACCGACATGGAGATTTGGATAATCCCAAGCTTTGAAAACTCA
GCATGGTCAATCATGGCAATCTCTTTTATTTCTCTTCTTGCCATGTCTGC
AGTGCTGGCAACTTGCTTCTTTGTACGCAGGCATCGTATAAGACGAGAAG
CTCCTCGGGCATCTCGTGCCCAGGAATTTCATGGGATGAGCAGGCGTTTG
GTTAAAGCAATGCCAAGCTTGATATTTACTGCCGTTGTAGAGGATAATTG
TACCTCAAGAACATGTGCTATATGCCTTGAGGACTATAGTGTTGGAGAGA
AACTCAGAATTCTGCCATGTCGTCACAAATTTCATGCTTTCTGTGTGGAT
TCTTGGCTTACATCATGGAGAACATTTTGCCCGGTTTGCAAGCGGGATGC
TAGGACTAGCACAGGTGAACCCCCGGCATCAGAGTCTACACCATTGCTTT
CATCTAGCCCAGCTTCCTCCTCTATACTTTCATCTATAAGATCTTCACTA
GCATCATCTTCAGCCTTACATATACCCCCATCAATGTCACATTCATCTTC
TGTCTCTCACATTCACTCTGTTGCTTCTACTCCTTATATTCCACAATCTC
TTAGGTCCTACTGTCAATCTCCTCCCATAAGTGTTAGTCGAAGCTCTCTA
GATCTCAGACATGCTTCTTCCCAAAGATCTCATGGTTCTTATATCATGTC
ATCTCACTCCATTGGGTACCCATCTATATCACCTCTTAAACTCAGATACA
TGTCTCCATACCTTCCNAGCCCNAGCATGCATCACCCAGTTTAGTCGGTT
CTTTCAGTCATCAGCAGCATCCCTGCCATATAGTGAATCTGCCACAGTTT
CTCTCCTTTTGCTCTGCTCATCTCTTCCTGAATGTGATG
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