EY660424

Overview
NameEY660424
Unique NameEY660424
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660424 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.687e-40
Identity = 105/247 (42.51%), Postives = 127/247 (51.42%), Query Frame = 1
Query:  169 WARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGG--------RTGATPE-----GHHXXXXXXXXAASWLLLSXXXXXXXXXXXXXXXXXXXXXEVDEYLDLVDYTGGN-QYLDQYSTGNNNQQQHGVAQKGYVGDSVVPVQCEXLTRXXXXXAKFSLGLDYDSLXXI*LPR-SISHSVSV 864
            WA+ CDTCR+AACTVYC+AD AYLCS+CD++VH ANR+A RHERV VC+SCE+APAAF               EIHSANPLARRHQRVPILPIS   Y           T   PE     G          AASWLL +                       DE+L+LVDY+  + Q+ DQ    N  Q    V Q+ Y  D VVP+Q E           F L ++  S   +     S+SH V+V
Sbjct:    8 WAQACDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPENRLVLGQEEEDEDEAEAASWLLPNSGKNSGNNNGFSIG---------DEFLNLVDYSSSDKQFTDQ---SNQYQLDCNVPQRSYGEDGVVPLQIEVSKGMYQEQQNFQLSINCGSWGALRSSNGSLSHMVNV 242          
BLAST of EY660424 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.311e-39
Identity = 104/232 (44.83%), Postives = 120/232 (51.72%), Query Frame = 1
Query:  124 MMKEEXXXXXXXXXXWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGGRTGATPEGHHXXXXXXXXAASWLLLSXXXXXXXXXXXXXXXXXXXXXEVDEYLDLVDYTGG--NQYLDQYSTGNNNQQQHGVAQKGYVGDSVVPVQCEXLT-RXXXXXAKFSLGLDY 810
            M+KEE          WAR CDTCR+AACTVYC+AD AYLC+ CD+RVH ANRVA RHERV VC+SCE APAAF               EIHSANPLARRHQRVPILP+S +       A  E            ASWLL +                        EYLDLVDY+    NQ+ D       NQ  H   Q+ + GD VVP+Q E  T         F LG++Y
Sbjct:    1 MLKEESNESGT----WARACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILPLSANSCSSM--APSETDADNDEDDREVASWLLPNPGKNIGNQNNGFLFGV--------EYLDLVDYSSSMDNQFED-------NQYTH--YQRSFGGDGVVPLQVEESTSHLQQSQQNFQLGINY 209          
BLAST of EY660424 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.772e-36
Identity = 97/230 (42.17%), Postives = 116/230 (50.43%), Query Frame = 1
Query:  124 MMKEEXXXXXXXXXXWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGG---------RTGATPEGH--------HXXXXXXXXAASWLLLSXXXXXXXXXXXXXXXXXXXXXEVDEYLDLVDYTGGNQYLDQYSTG--NNNQQQHGVAQKGYVGDSVVPVQCE 756
            M+K+E           AR CDTCR+ ACTVYC AD AYLC +CD++VH ANRVA RH+RV VCESCE+APAAF               E+HSANPLARRHQRVPILPISG+ +           +T   PE                    ASWL  +                       DEYL+LVDY   N  +D   TG  + +QQ   V Q  Y GD VVP++ E
Sbjct:    1 MLKQESNDIGSGENNRARPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTTHHQSEKTMTDPEKRLVVDQEEGEEGDKDAKEVASWLFPNSDKNNNNQNNGLLFS--------DEYLNLVDY---NSSMDYKFTGEYSQHQQNCSVPQTSYGGDRVVPLKLE 219          
BLAST of EY660424 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.191e-24
Identity = 54/123 (43.90%), Postives = 75/123 (60.98%), Query Frame = 1
Query:  172 ARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGGRTGATPEGHHXXXXXXXXAASWLL 540
            +R+CD+C++ A T++C+AD A+LC  CD ++H AN++A RHERV++CE CEQAPA                 +IHSANPL+RRH+RVPI P   +V G    A+   +          ASWLL
Sbjct:    5 SRLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAV-GPAKSASSSVNFVDEDGGDVTASWLL 126          
BLAST of EY660424 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.935e-23
Identity = 57/137 (41.61%), Postives = 77/137 (56.20%), Query Frame = 1
Query:  172 ARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYG-GRTGATP------------EGHHXXXXXXXXAASWLLL 543
            +++CD+C++A   +YC+ D A+LC +CDS+VH AN++A RH RV++CE CEQAPA                 +IHSANPLARRH+RVP+ P   SV   G    T             +G+         AASWLLL
Sbjct:    3 SKLCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGSVKHTAVNFLDDCYFSDIDGNGSREEEEEEAASWLLL 139          
BLAST of EY660424 vs. ExPASy Swiss-Prot
Match: COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 7.480e-19
Identity = 44/89 (49.44%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  172 ARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPI 438
            AR CD C++    V+C+ D A+LC ACD+R+H       RHERV+VCE CEQAPAA                +IHSANPLA RH+RVP+
Sbjct:   19 ARSCDACKSVTAAVFCRVDSAFLCIACDTRIHSFT----RHERVWVCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPV 103          
BLAST of EY660424 vs. ExPASy Swiss-Prot
Match: COL13_ARATH (Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.395e-11
Identity = 33/93 (35.48%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  175 RVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISG 453
            R+CD C ++   VYCKAD A LC ACD +VHVAN++  +H R  +C+SC ++P++                + H+A+  +  H R P    +G
Sbjct:   11 RLCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETERSVLCQNCDWQHHTAS--SSLHSRRPFEGFTG 101          
The following BLAST results are available for this feature:
BLAST of EY660424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
COL1_ARATH7.687e-4042.51Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
COL2_ARATH1.311e-3944.83Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more]
CONS_ARATH1.772e-3642.17Zinc finger protein CONSTANS OS=Arabidopsis thalia... [more]
COL3_ARATH1.191e-2443.90Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
COL4_ARATH2.935e-2341.61Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
COL5_ARATH7.480e-1949.44Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... [more]
COL13_ARATH4.395e-1135.48Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-022-A10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660424 ID=EY660424; Name=EY660424; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGCAATTCACAAACAAGCTGAAACAAAACGTCGGCATTTCG
AGTGTGAGGGAAAATTTAAAGAATTAAAAAAAGAGAGAGAGAGAGAGAAA
CAAGAAAACCAACTAATTAAACGATGATGAAAGAGGAGAGCAACGACGGC
AGTGGAGGAGGAAACAGCTGGGCACGTGTGTGTGACACTTGCAGGGCAGC
TGCATGCACGGTCTACTGCAAAGCTGATATGGCGTATCTTTGCTCTGCAT
GCGACTCCAGAGTCCATGTAGCCAATCGTGTCGCCTTTAGACACGAGCGC
GTGTTCGTGTGCGAGTCCTGCGAGCAAGCCCCGGCTGCTTTCTTATGCAA
GGCGGACGCGGCGTCGCTTTGTGCTGCATGTGACGCTGAGATTCACTCAG
CAAACCCTCTCGCAAGGCGCCACCAGCGGGTCCCTATTCTTCCGATATCT
GGCTCGGTGTACGGGGGAAGGACCGGCGCGACGCCGGAGGGACATCATGA
GGATGACCAGGACGAGGAAGAAGCGGCTTCGTGGTTGCTGTTGAGTAATC
CTGGGAAGAATTGCGGTAATGGTAATAATGGGAATAATAATGGGTTTCTG
TTTGGTGGGGAAGTTGATGAGTACTTGGACCTTGTGGATTATACTGGTGG
GAATCAGTACCTTGATCAGTACAGTACTGGTAACAATAATCAGCAACAGC
ACGGTGTTGCTCAAAAGGGTTATGTGGGTGACAGTGTTGTGCCTGTTCAG
TGTGAATANCTAACAAGATCATCATCGTCATCAGCAAAATTTTCACTGGG
ATTGGACTATGATTCTCTAANGCNGATATAGCTACCACGGTCAATTAGTC
ACAGTGTCTCGGTTCCTCTACTGATCTCGGAGGGTACGCGAATCACCATG
A
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