EY660415

Overview
NameEY660415
Unique NameEY660415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1031
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660415 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 4.052e-35
Identity = 81/117 (69.23%), Postives = 91/117 (77.78%), Query Frame = 3
Query:  129 EIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDADFQKDEMIDPLGVPKGQGYERCCPPVGVLPAFLPRLTEVCLR-WT*LGAWSPARVYST 476
            ++KKYAS+VRV+AHTQIRKMKGLKQKKAHLMEIQ+NGGTIA+KVDY Y FFEK+IPVDA FQKDEMID +GV KG+GYE      GV    LPR T   LR    +GAW PARV  T
Sbjct:  152 KMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV--TRLPRKTHRGLRKVACIGAWHPARVSYT 266          
BLAST of EY660415 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 148.288 bits (373), Expect = 6.912e-35
Identity = 84/137 (61.31%), Postives = 100/137 (72.99%), Query Frame = 3
Query:  129 EIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDADFQKDEMIDPLGVPKGQGYERCCPPVGVLPAFLPRLTEVCLR-WT*LGAWSPARVYSTFCPELGRMDYLLFYRNELQR 536
            ++KKYA+V+RVLAHTQIRKMKGLKQKKAH+MEIQ+NGGTIA+KVD+AY FFEKQIP++A FQKDEMID +GV KG+GYE      GV    LPR T   LR    +GAW PARV  T     G+  Y   +R EL +
Sbjct:  152 KMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGV--TRLPRKTHRGLRKVACIGAWHPARVSYTVA-RAGQNGY--HHRTELNK 283          
BLAST of EY660415 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 143.28 bits (360), Expect = 2.223e-33
Identity = 83/127 (65.35%), Postives = 93/127 (73.23%), Query Frame = 3
Query:  102 GRKDPRSAGE-IKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDADFQKDEMIDPLGVPKGQGYERCCPPVGVLPAFLPRLTEVCLR-WT*LGAWSPARVYST 476
            G+KD +S  E +KKY SV+RVLAHTQIRKMKGLKQKKAHL EIQ+NGG IA+KVDYA   FEKQ+PVDA FQKDEMID +GV KG+GYE      GV    LPR T   LR    +GAW PARV  T
Sbjct:  142 GKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGV--TRLPRKTHRGLRKVACIGAWHPARVSYT 266          
BLAST of EY660415 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.706e-25
Identity = 71/137 (51.82%), Postives = 86/137 (62.77%), Query Frame = 3
Query:   99 SGRKDPRSAGEIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDADFQKDEMIDPLGVPKGQGYERCCPPVGVLPAFLPRLTEVCLR-WT*LGAWSPARVYSTFCPELGRMDY 506
            +G    R    IKKY +VVRVLAHTQIRK   LKQKKAHLMEIQVNGG++A+KVD+A   FEK I +D+ F+KDEMID + V KG G++      G     LPR T   LR    +GAW P+ V  T     G+M Y
Sbjct:  141 NGASITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKGHGFQGVTSRWGTKK--LPRKTHKGLRKVACIGAWHPSHVQWTVA-RAGQMGY 273          
BLAST of EY660415 vs. ExPASy Swiss-Prot
Match: RL3_NEUCR (60S ribosomal protein L3 OS=Neurospora crassa GN=rpl-3 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.203e-24
Identity = 64/127 (50.39%), Postives = 82/127 (64.57%), Query Frame = 3
Query:   99 SGRKDPRSAGEIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDADFQKDEMIDPLGVPKGQGYERCCPPVGVLPAFLPRLTEVCLR-WT*LGAWSPARVYST 476
            +G    R    IKKY +VVRVLAHTQIRK   LKQKKAHLMEIQ+NGG++A+KV++ +G FEK + +D+ F+KDE+ID + V KG G+       G     LPR T   LR    +GAW P+ V  T
Sbjct:  141 NGAAITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAHLMEIQINGGSVADKVEFGHGLFEKPVSIDSIFEKDEVIDVIAVTKGHGFTGVTARWGTKK--LPRKTHKGLRKVACIGAWHPSHVQWT 264          
BLAST of EY660415 vs. ExPASy Swiss-Prot
Match: RL3_DEBHA (60S ribosomal protein L3 OS=Debaryomyces hansenii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.597e-23
Identity = 67/126 (53.17%), Postives = 80/126 (63.49%), Query Frame = 3
Query:  102 GRKDPRSAGEIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDADFQKDEMIDPLGVPKGQGYERCCPPVGVLPAFLPRLTEVCLR-WT*LGAWSPARVYST 476
            G +  R    IKKYASVVRVLAHTQI+K   L QKKAHL EIQVNGG++++KVD+A   FEK + VD+ F+KDEM+D   V KG G+E      G     LPR T   LR    +GAW PA V  T
Sbjct:  141 GAQVERELARIKKYASVVRVLAHTQIKKTP-LAQKKAHLAEIQVNGGSVSDKVDWAKEHFEKTVSVDSVFEKDEMVDVAAVTKGHGFEGVTHRWGTKK--LPRKTHRGLRKVACIGAWHPANVQWT 263          
BLAST of EY660415 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.558e-23
Identity = 65/131 (49.62%), Postives = 88/131 (67.18%), Query Frame = 3
Query:  102 GRKDPRS-AGEIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDADFQKDEMIDPLGVPKGQGYERCCPPVGVLPAF----LPRLTEVCLR-WT*LGAWSPARVYST 476
            GRK   +   ++KKY S +RV+AHTQ++ MK  ++KKAH+MEIQ+NGGT+AEKVD+A    EKQ+PVD+ F +DEMID +GV KG+G++      GV   +    LPR T   LR    +GAW P+RV  T
Sbjct:  142 GRKSIEADLNKMKKYCSKIRVIAHTQMKVMKH-REKKAHIMEIQINGGTVAEKVDWAREHLEKQVPVDSVFAQDEMIDCIGVTKGKGFK------GVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFT 265          
BLAST of EY660415 vs. ExPASy Swiss-Prot
Match: RL3_BOVIN (60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 4.647e-23
Identity = 66/130 (50.77%), Postives = 85/130 (65.38%), Query Frame = 3
Query:   96 ASGRKD-PRSAGEIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDADFQKDEMIDPLGVPKGQGYERCCPPVGVLPAF----LPRLTEVCLR-WT*LGAWSPARV 467
            A G+K   R    +KKY  V+RV+AHTQ+R +  L+QKKAHLME+QVNGGT+AEK+D+A    E+Q+PV   F +DEMID +GV KG+GY+      GV   +    LPR T   LR    +GAW PARV
Sbjct:  140 ADGKKQLERDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYK------GVTSRWHTKKLPRKTHRGLRKVACIGAWHPARV 262          
BLAST of EY660415 vs. ExPASy Swiss-Prot
Match: RL3_ASHGO (60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.647e-23
Identity = 67/130 (51.54%), Postives = 81/130 (62.31%), Query Frame = 3
Query:   90 THASGRKDPRSAGEIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDADFQKDEMIDPLGVPKGQGYERCCPPVGVLPAFLPRLTEVCLR-WT*LGAWSPARVYST 476
            T   G    R    IKKYASVVRVLAHTQ+RK   L QKKAHL EIQ+NGG+++EKVD+A   FEK + VD+ F+++EMID + V KG G+E      G     LPR T   LR    +GAW PA V  T
Sbjct:  138 TAQDGAAIERELARIKKYASVVRVLAHTQVRKTP-LVQKKAHLAEIQLNGGSVSEKVDWAREHFEKTVSVDSVFEQNEMIDVIAVTKGHGFEGVTHRWGTKK--LPRKTHRGLRKVACIGAWHPAHVMWT 264          
BLAST of EY660415 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 107.842 bits (268), Expect = 1.035e-22
Identity = 65/118 (55.08%), Postives = 77/118 (65.25%), Query Frame = 3
Query:  117 RSAGEIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDADFQKDEMIDPLGVPKGQGYERCCPPVGVLPAFLPRLTEVCLR-WT*LGAWSPARV 467
            R    IKKYASVVRVL HTQIRK   L QKKAHL EIQ+NGG+I+EKVD+A   FEK + VD+ F+++EMID + V KG G+E      G     LPR T   LR    +GAW PA V
Sbjct:  146 RELARIKKYASVVRVLVHTQIRKTP-LAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKK--LPRKTHRGLRKVACIGAWHPAHV 260          
The following BLAST results are available for this feature:
BLAST of EY660415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL3_ORYSJ4.052e-3569.2360S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL31_ARATH6.912e-3561.3160S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL32_ARATH2.223e-3365.3560S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL3_ASPFU1.706e-2551.8260S ribosomal protein L3 OS=Aspergillus fumigatus ... [more]
RL3_NEUCR4.203e-2450.3960S ribosomal protein L3 OS=Neurospora crassa GN=r... [more]
RL3_DEBHA1.597e-2353.1760S ribosomal protein L3 OS=Debaryomyces hansenii ... [more]
RL3_TOXCA3.558e-2349.6260S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]
RL3_BOVIN4.647e-2350.7760S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=... [more]
RL3_ASHGO4.647e-2351.5460S ribosomal protein L3 OS=Ashbya gossypii GN=RPL... [more]
RL3_YEAST1.035e-2255.0860S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-022-A01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660415 ID=EY660415; Name=EY660415; organism=Citrus sinensis; type=EST; length=1031bp
TGTGGGTGTGTCGGTTTTTNNTATCTTTTTTTCTTTCCATGAACACCAGC
CAAAGAGGAATAAGGAGAAGGACAGGAATCACTTGCCCGACCCACGCGTC
CGGAAGAAAAGATCCACGCTCAGCTGGAGAAATCAAGAAGTATGCATCTG
TTGTTCGTGTTCTTGCTCACACTCAGATTAGGAAAATGAAGGGTTTGAAG
CAGAAGAAGGCACACCTGATGGAAATCCAGGTCAATGGTGGCACCATTGC
TGAAAAAGTTGACTATGCATATGGCTTCTTTGAAAAGCAAATTCCTGTAG
ATGCTGATTTCCAGAAGGATGAGATGATTGACCCTCTCGGTGTCCCGAAA
GGACAAGGCTATGAAAGGTGTTGTCCACCCGTTGGGGTGTTACCCGCCTT
CCTCCCAAGACTCACAGAGGTCTGCCTAAGGTGGACTTGACTTGGTGCCT
GGTCACCTGCTAGGGTCTACTCCACATTTTGCCCCGAACTGGGCAGAATG
GACTACCTTCTATTCTACAGAAATGAACTTCAACGCTTCCCAGCCTTGTT
AGGCAGCTGAACAGCAACCCTCCTCGCCCTACTTGATTTTTACTGTCTGA
AATAGATCATCCCACCCTTGGCTGGGCTCTCCCCCCGTCAGTATTCTCCA
AACTTGACTACTTCCCCTACACAGCCACGCTTTCTCCATCAATAAATATC
CCGCGCACCCCGTCTGCGACCCCCCCTCTCAAACCCACGTACGGCTGTGG
TCTGTATGGAGTCATAGATTAAGATTACACAATCACCAACCATGAATCGC
GCATGGGCCGCTTCCTAATTTAGACAGGATATAACACTATCTACCTCTCC
AATTATCCCTACTTACTACTTTGAACCCAGATAACTAGCACCNCACTGAT
TCTCACATTTTATACAAAGATATCTTCTCAACTGCTTGACTGCTAGGGAC
ATTTTCGATACTATGACACCCTCTTTTCTCTATCACGCTACATTTTGTTT
TCATTATTCCTCTATTCTTTCATCTTACCTC
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