EY660413

Overview
NameEY660413
Unique NameEY660413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660413 vs. ExPASy Swiss-Prot
Match: LBD37_ARATH (LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.563e-67
Identity = 136/226 (60.18%), Postives = 155/226 (68.58%), Query Frame = 2
Query:  176 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCG---GSPTPTSDDVSEAEVTCTDMSRLQDXXXXXXXXXXXXXXXXXXXXXXXXXEE-------SAMKLQQSDLDLRLTPRXTGK--VPPEVKRRPGTPSMNSGGSGTTT 817
            MSCNGCRVLRKGCSE+CILRPC+QWIE+ ++QGHATVFVAKFFGRAGLMSFISAVP+SQRPALFQSLLYEACGRTVNPVNGA+G+LWTGNW++CQAAVETVLRGG+LRP+PELL   G   G P+PTS++ SE    CT+M  LQ                                   S+     S+LDL L P    K   P   +RR  TPSMNS  SGTTT
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHGGGFAGFPSPTSEEASE---ICTEMLNLQQNDSTDRNIYHHSRFSSSRSRSTMDSSSPTKRKRLSSEDQPSSELDLSLIPNFPIKQATPSSTRRRSVTPSMNSEDSGTTT 223          
BLAST of EY660413 vs. ExPASy Swiss-Prot
Match: LBD38_ARATH (LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 5.344e-65
Identity = 120/144 (83.33%), Postives = 131/144 (90.97%), Query Frame = 2
Query:  176 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCG--GSPTPTSDDVSEAEVTCTDMSRLQ 601
            MSCNGCRVLRKGCSE+CILRPC+QWIESPE+QGHATVFVAKFFGRAGLMSFISAVPESQ PALFQSLLYEACGRTVNPVNGAVGLLWTGNW+VCQAAVETVLRGG+L+P+PELLN  G  G P+PTSD+ SE    CT+M  L+
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFAGFPSPTSDEASE---ICTEMLNLR 141          
BLAST of EY660413 vs. ExPASy Swiss-Prot
Match: LBD39_ARATH (LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 4.382e-59
Identity = 131/227 (57.71%), Postives = 148/227 (65.20%), Query Frame = 2
Query:  176 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCGGSPTPTSDDVSEAEVTCTDMSRLQDXXXXXXXXXXXXXXXXXXXXXXXXXEESAMKLQ-QSDLDLRLTPRXTGKVPPE-----VK-RRPGTPSMNSGGSGTTTCLESGV 835
            MSCNGCRVLRKGCSE+CILRPCLQWIES ESQGHATVFVAKFFGRAGLMSFIS+VPE QRPALFQSLL+EACGRTVNPVNGAVG+LWT NWHVCQAAVETVLRGGTLRP+ +LL     SP+        +E+   D+SR Q                           +S + LQ    L L         +PP      VK  RPG+PS     S TT+C E+G+
Sbjct:    1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQRPALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPISDLLE----SPSLMISCDESSEIWHQDVSRNQTHHCRFSTSRSTTEMKDSLVNRKRLKSDSDLDLQVNHGLTLTAPAVPVPFLPPSSFCKVVKGDRPGSPSEE---SVTTSCWENGM 220          
BLAST of EY660413 vs. ExPASy Swiss-Prot
Match: LBD40_ARATH (LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.200e-44
Identity = 77/110 (70.00%), Postives = 96/110 (87.27%), Query Frame = 2
Query:  176 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPV 505
            MSCNGCRVLRKGCSE+C +RPCLQWI+S ESQ +ATVF+AKF+GRAGLM+ ++  P+  RPA+F+SLLYEACGR VNP+ G+VGLLW+GNWH+CQAAVE V+RG  + P+
Sbjct:    3 MSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPI 112          
BLAST of EY660413 vs. ExPASy Swiss-Prot
Match: LBD41_ARATH (LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.199e-40
Identity = 74/121 (61.16%), Postives = 95/121 (78.51%), Query Frame = 2
Query:  176 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCGGSP 538
            MSCNGCRVLRKGCSE C +RPCL WI+SPE+Q +ATVF+AKF+GRAGLM+ I+A P   RP +F+SLL+EACGR VNP+ G+VGLLW+GNW +CQ AVE V++G  ++ +     + G  P
Sbjct:    3 MSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIGQGP 123          
BLAST of EY660413 vs. ExPASy Swiss-Prot
Match: LBD42_ARATH (LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.856e-39
Identity = 70/111 (63.06%), Postives = 92/111 (82.88%), Query Frame = 2
Query:  176 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVP 508
            +SCNGCRVLRKGC++ C +RPCLQWI+S +SQ +AT+F+AKF+GRAGL++ I + P+  RPA+F+SLLYEACGR VNPV+G+VGL+W+GNW  CQAAV+ VL G  +   P
Sbjct:    3 ISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTP 113          
The following BLAST results are available for this feature:
BLAST of EY660413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LBD37_ARATH2.563e-6760.18LOB domain-containing protein 37 OS=Arabidopsis th... [more]
LBD38_ARATH5.344e-6583.33LOB domain-containing protein 38 OS=Arabidopsis th... [more]
LBD39_ARATH4.382e-5957.71LOB domain-containing protein 39 OS=Arabidopsis th... [more]
LBD40_ARATH5.200e-4470.00LOB domain-containing protein 40 OS=Arabidopsis th... [more]
LBD41_ARATH1.199e-4061.16LOB domain-containing protein 41 OS=Arabidopsis th... [more]
LBD42_ARATH3.856e-3963.06LOB domain-containing protein 42 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-H11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660413 ID=EY660413; Name=EY660413; organism=Citrus sinensis; type=EST; length=908bp
CCACGCGTCCGACTCATTCCACTTTGGCTCTCCCCTTTCTGCAGCAGCCA
GCCAAAGCAATCAAACAACCTTAATAATTACTCTCCAAATCCTCGCGTTT
ATGTAATAGCTTTTCTTTTTTTAACCCTTTCTCTTTAAGGATAAAGAAGA
ACGACAAAAGACAAGAAGCTGAGAGATGAGTTGCAACGGATGCCGAGTTT
TGCGAAAAGGATGCAGCGAGTCGTGTATTTTACGTCCTTGTTTACAGTGG
ATCGAGAGTCCTGAATCCCAAGGCCACGCTACTGTGTTCGTCGCCAAATT
CTTTGGCCGTGCTGGCCTCATGTCCTTCATCTCGGCTGTCCCTGAATCCC
AGCGTCCTGCGTTGTTTCAGTCTTTGTTGTACGAAGCCTGTGGCCGAACT
GTGAATCCTGTGAATGGAGCTGTAGGTCTTTTGTGGACGGGGAACTGGCA
TGTTTGCCAGGCTGCCGTGGAAACTGTCCTCCGAGGCGGCACGTTGCGTC
CGGTGCCGGAGCTTCTCAACAGCTGCGGCGGATCGCCAACACCAACTTCC
GACGATGTATCGGAAGCTGAAGTGACTTGCACGGACATGTCTAGGTTGCA
AGATCGGTCGTTTCCAAGTTCTCATTGTAGATTCTCGAGTTCAAGATCCA
AGGTGTCACCAGCTAAACGTAAGAGAGTGGAAGAATCAGCAATGAAATTG
CAACAGTCAGATCTGGATCTTCGCTTGACGCCAAGGNTTACGGGCAAGGT
TCCGCCGGAAGTCAAGCGGCGACCTGGTACTCCGTCGATGAATTCCGGAG
GATCAGGCACCACTACGTGCCTCGAAAGTGGGGTAACAGATCCTCCATAT
CCTCATGGAGCTGAGGAGGAGAAATACTCCACTTGTTCCGTTTGACCAAT
ATATCCTT
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