EY660411

Overview
NameEY660411
Unique NameEY660411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660411 vs. ExPASy Swiss-Prot
Match: RF1_PARL1 (Peptide chain release factor 1 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=prfA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.004e-16
Identity = 40/92 (43.48%), Postives = 60/92 (65.22%), Query Frame = 1
Query:  616 KDMLDMATEELCLAIDEEKRXXXXXXXXXXPKDDADERDCILEVRAGTGREXASXVAVDVFKMYERYSQKEGWKVESVGVTESDLRGYRKLV 891
            +DM +MA EE+    +E  R          PKD AD+R+ ILEVRAGTG + A+  A D+F+MYERY+  +GWKVE +  +E ++ GY++++
Sbjct:   67 RDMAEMAKEEIARLNEELPRLEHEVQLMLLPKDAADDRNVILEVRAGTGGDEAALFAGDLFRMYERYASNQGWKVELIAASEGEMGGYKEII 158          
BLAST of EY660411 vs. ExPASy Swiss-Prot
Match: RF1_PROM2 (Peptide chain release factor 1 OS=Prochlorococcus marinus (strain MIT 9215) GN=prfA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.614e-16
Identity = 44/107 (41.12%), Postives = 62/107 (57.94%), Query Frame = 1
Query:  571 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRXXXXXXXXXXPKDDADERDCILEVRAGTGREXASXVAVDVFKMYERYSQKEGWKVESVGVTESDLRGYRKLV 891
            EI+  K+L+ E   DK+M  +  EEL +  + +            PKD  DER  +LE+RAG G   A   A D+ +MYERY QK GW V+SV  +ESD+ G+++LV
Sbjct:   62 EIEDSKNLLKENRNDKEMESLINEELIILEEFKNELIQKTTIALLPKDPRDERSVMLEIRAGAGGSEACIWAGDLARMYERYGQKVGWSVKSVSASESDMGGFKELV 168          
BLAST of EY660411 vs. ExPASy Swiss-Prot
Match: RF1_NOVAD (Peptide chain release factor 1 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=prfA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.696e-15
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 1
Query:  610 EDKDMLDMATEELCLAIDEEKRXXXXXXXXXXPKDDADERDCILEVRAGTGREXASXVAVDVFKMYERYSQKEGWKVESVGVTESDLRGYRKLV 891
            +D DM ++A EEL     E             P+D AD R  +LE+RAGTG + A+  A D+F+MYERY+ ++GW+VE++ V  +DL GY+++V
Sbjct:   66 DDPDMRELADEELARIRAELPEAEHRLAVAMLPRDSADARPAMLEIRAGTGGDEAALFAADLFRMYERYAAEQGWRVETISVNANDLGGYKEVV 159          
BLAST of EY660411 vs. ExPASy Swiss-Prot
Match: RF1_RHILW (Peptide chain release factor 1 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=prfA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.215e-15
Identity = 41/107 (38.32%), Postives = 67/107 (62.62%), Query Frame = 1
Query:  571 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRXXXXXXXXXXPKDDADERDCILEVRAGTGREXASXVAVDVFKMYERYSQKEGWKVESVGVTESDLRGYRKLV 891
            E+  L++L+ + S D++M D+A  EL    ++ +           PKD ADE+  ILE+RAGTG   A+  A D+F+MYER+S ++GWKVE +  +E +  GY++++
Sbjct:   58 ELADLETLLEDKSVDREMRDLAELELPEVKEQIEALEQEMQILLLPKDAADEKSAILEIRAGTGGSEAALFAGDLFRMYERFSAEKGWKVEVLSASEGEAGGYKEII 164          
BLAST of EY660411 vs. ExPASy Swiss-Prot
Match: RF1_METSB (Peptide chain release factor 1 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=prfA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.215e-15
Identity = 40/107 (37.38%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  571 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRXXXXXXXXXXPKDDADERDCILEVRAGTGREXASXVAVDVFKMYERYSQKEGWKVESVGVTESDLRGYRKLV 891
            E++GL +++ + + D +M  +A EEL  A +  +           PKD ADER  ILEVRAGTG + A+  A D+F+MY+RY++ +GW VE +   E    G+++++
Sbjct:   56 EVEGLAAMLADPTTDSEMRGLAEEELRDAKERLEALEHQLKIALLPKDAADERSAILEVRAGTGGDEAALFAGDLFRMYQRYAESKGWSVEIISANEGAAGGFKEII 162          
BLAST of EY660411 vs. ExPASy Swiss-Prot
Match: RF1_PROM0 (Peptide chain release factor 1 OS=Prochlorococcus marinus (strain MIT 9301) GN=prfA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.779e-15
Identity = 43/107 (40.19%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  571 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRXXXXXXXXXXPKDDADERDCILEVRAGTGREXASXVAVDVFKMYERYSQKEGWKVESVGVTESDLRGYRKLV 891
            EI+  K+L+ E   DK+M  +  EEL    + +            PKD  DER  +LE+RAG G   A   A D+ +MYERY QK GW V+ V  +ESD+ G+++LV
Sbjct:   62 EIEDSKNLLKENRNDKEMESLINEELITLEESKSELIQKTTIALLPKDPRDERSVMLEIRAGAGGNEACIWAGDLARMYERYGQKIGWSVKPVSASESDMGGFKELV 168          
BLAST of EY660411 vs. ExPASy Swiss-Prot
Match: RF1_RHIL3 (Peptide chain release factor 1 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=prfA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.935e-15
Identity = 40/107 (37.38%), Postives = 67/107 (62.62%), Query Frame = 1
Query:  571 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRXXXXXXXXXXPKDDADERDCILEVRAGTGREXASXVAVDVFKMYERYSQKEGWKVESVGVTESDLRGYRKLV 891
            E+  L++L+ + S D++M D+A  EL    ++ +           PKD ADE+  ILE+RAGTG   A+  A D+F+MYER++ ++GWKVE +  +E +  GY++++
Sbjct:   58 ELADLETLLEDRSVDREMRDLAELELPEVKEQIEALEQEMQILLLPKDAADEKSAILEIRAGTGGSEAALFAGDLFRMYERFAAEKGWKVEVLSASEGEAGGYKEII 164          
BLAST of EY660411 vs. ExPASy Swiss-Prot
Match: RF1_BARHE (Peptide chain release factor 1 OS=Bartonella henselae GN=prfA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.935e-15
Identity = 41/107 (38.32%), Postives = 64/107 (59.81%), Query Frame = 1
Query:  571 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRXXXXXXXXXXPKDDADERDCILEVRAGTGREXASXVAVDVFKMYERYSQKEGWKVESVGVTESDLRGYRKLV 891
            EI  L+++I +   D +M  +A EEL L   + ++          PKD ADE+  I+E+RAGTG   A+  A D+F+MYERY+    WKVE V + E ++ GY++++
Sbjct:   58 EITDLETIISDKLTDVEMRTLAQEELPLLCQKMEQLEQKLQILLLPKDVADEKSAIVEIRAGTGGSEAALFAGDLFRMYERYAASRNWKVEVVSLNEGEVGGYKEII 164          
BLAST of EY660411 vs. ExPASy Swiss-Prot
Match: RF1_PROMP (Peptide chain release factor 1 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=prfA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.446e-15
Identity = 44/107 (41.12%), Postives = 59/107 (55.14%), Query Frame = 1
Query:  571 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRXXXXXXXXXXPKDDADERDCILEVRAGTGREXASXVAVDVFKMYERYSQKEGWKVESVGVTESDLRGYRKLV 891
            EI   K L+ E   DKDM  +  EEL    D + +          PKD  DER  +LE+RAG G   A   A D+ +MYERY QK GW V+ +  +ESD+ G+++LV
Sbjct:   62 EIGDSKQLLKENRNDKDMESLINEELFSLEDLKNQLIEKLTIALLPKDPRDERSVMLEIRAGAGGNEACIWAGDLARMYERYGQKIGWTVKPISASESDMGGFKELV 168          
BLAST of EY660411 vs. ExPASy Swiss-Prot
Match: RF1_AGRT5 (Peptide chain release factor 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=prfA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.419e-15
Identity = 41/107 (38.32%), Postives = 63/107 (58.88%), Query Frame = 1
Query:  571 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRXXXXXXXXXXPKDDADERDCILEVRAGTGREXASXVAVDVFKMYERYSQKEGWKVESVGVTESDLRGYRKLV 891
            E   L++L+ + + DKDM D+A  EL       +           PKD ADE+  ILE+RAGTG   A+  A D+F+MYER++  +GWKVE +  +E +  GY++++
Sbjct:   58 EAADLEALLADKTTDKDMRDLAEMELPEVETRIRELEKDMQVLLLPKDAADEKSAILEIRAGTGGSEAALFAGDLFRMYERFAATKGWKVEVLSASEGEAGGYKEII 164          
The following BLAST results are available for this feature:
BLAST of EY660411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
RF1_PARL12.004e-1643.48Peptide chain release factor 1 OS=Parvibaculum lav... [more]
RF1_PROM27.614e-1641.12Peptide chain release factor 1 OS=Prochlorococcus ... [more]
RF1_NOVAD1.696e-1541.49Peptide chain release factor 1 OS=Novosphingobium ... [more]
RF1_RHILW2.215e-1538.32Peptide chain release factor 1 OS=Rhizobium legumi... [more]
RF1_METSB2.215e-1537.38Peptide chain release factor 1 OS=Methylocella sil... [more]
RF1_PROM03.779e-1540.19Peptide chain release factor 1 OS=Prochlorococcus ... [more]
RF1_RHIL34.935e-1537.38Peptide chain release factor 1 OS=Rhizobium legumi... [more]
RF1_BARHE4.935e-1538.32Peptide chain release factor 1 OS=Bartonella hense... [more]
RF1_PROMP6.446e-1541.12Peptide chain release factor 1 OS=Prochlorococcus ... [more]
RF1_AGRT58.419e-1538.32Peptide chain release factor 1 OS=Agrobacterium tu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-H09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660411 ID=EY660411; Name=EY660411; organism=Citrus sinensis; type=EST; length=892bp
AAAATAAAGAATCGAGAAAAAGAAATGAGAAAAGTGAACTGGGCAATTGC
ATTACATCTAGGAGCGTTAAGGCAACTGGAATCTAGTTCTTCAATTTCAC
ATAGGAATCCTTTATTACATCAGAGATGGTTTGTCCAAAGAGCAGCCGCT
ACCCCTTCGCTCTCCAATTTTCGTTCTTATTCAACCGAAATGCTATCGAA
TGACCTTATAAAGATAATGGAGCAAAGGGTATTGGCTATTGAGCGGAGAA
GTGCTTGTCTTGAGAATCTGGTGAACCAGATAGCCAGAAGCCTCACCAGC
AGAGTATTCTAAGGCTAATAAAGAGCTGCGGAAACTCAGGGATTCCATGC
ACCTTATAAGTGAGTTGAGGACCAAACAAAAGGTGAACTACTTCTTGTGC
ATCTTTCTTGAGCTATTGGCTTTATATATATGGGGGAAAGATCGAAGAAA
ATACTGTTGCTGCTCTATGAAAATGATTAGGGAAGTATGATATGGCAGGC
GCTGTATTACTTTAGCTAATGTTTGGTTAATGAAGCTATTTGAGTCATCT
ATCTGGATTGTAATGTGTAGGAGATTGATGGGTTGAAATCCCTGATATAT
GAATGTTCTGAAGATAAAGACATGCTAGATATGGCTACTGAGGAATTGTG
CCTAGCAATTGATGAAGAGAAAAGATTGCAAAGTCTGCTTCTCAAGTCAT
TACTACCTAAGGACGATGCTGATGAAAGGGATTGCATTTTGGAAGTCAGA
GCTGGAACTGGNAGGGAAGANGCCTCTTTNGTTGCAGTAGACGTGTTTAA
GATGTATGAGAGATACTCACAGAAAGAGGGATGGAAAGTTGAAAGTGTCG
GTGTGACAGAGTCTGATCTCAGAGGATACAGGAAGCTAGTGC
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