EY660298

Overview
NameEY660298
Unique NameEY660298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY660298 vs. ExPASy Swiss-Prot
Match: UBP3_ARATH (Ubiquitin carboxyl-terminal hydrolase 3 OS=Arabidopsis thaliana GN=UBP3 PE=1 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.806e-84
Identity = 154/167 (92.22%), Postives = 158/167 (94.61%), Query Frame = 3 
Query:   78 LSLDIEQNSSITCCFKNNSFTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAED-ADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLG 575
            LSLDIEQNSSIT C KN S TETL+AEDKFFCDKCCSLQEAQKRMKIKK PH LVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNT E  AD+EYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMI+ESAVQTFFGS+QEYSSNTDHGYILFYESLG
Sbjct:  202 LSLDIEQNSSITSCLKNFSSTETLHAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTVEPYADVEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIEESAVQTFFGSSQEYSSNTDHGYILFYESLG 368
[Close]
BLAST of EY660298 vs. ExPASy Swiss-Prot
Match: UBP4_ARATH (Ubiquitin carboxyl-terminal hydrolase 4 OS=Arabidopsis thaliana GN=UBP4 PE=1 SV=2)

HSP 1 Score: 304.679 bits (779), Expect = 4.919e-82
Identity = 149/167 (89.22%), Postives = 157/167 (94.01%), Query Frame = 3 
Query:   78 LSLDIEQNSSITCCFKNNSFTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAED-ADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLG 575
            LSLDIEQNSSIT C KN S TETL+AEDKFFCDKCCSLQEAQKRMKIKK PH LVIHLKRFKY+EQLGRYKKLSYRVVFPLELKLSNT ++  DIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDE+VE+I+ESAVQTFFGS+QEYSSNTDHGYIL YESLG
Sbjct:  197 LSLDIEQNSSITSCLKNFSSTETLHAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYMEQLGRYKKLSYRVVFPLELKLSNTVDEYVDIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDESVEIIEESAVQTFFGSSQEYSSNTDHGYILLYESLG 363
[Close]
BLAST of EY660298 vs. ExPASy Swiss-Prot
Match: UBP46_PONAB (Ubiquitin carboxyl-terminal hydrolase 46 OS=Pongo abelii GN=USP46 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.142e-54
Identity = 102/167 (61.08%), Postives = 128/167 (76.65%), Query Frame = 3 
Query:   78 LSLDIEQNSSITCCFKNNSFTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDA---DIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYES 569
            LS+D+EQN+SIT C ++ S TETL +E K++C+ CCS QEAQKRM++KK P  L +HLKRFKY+EQL RY KLSYRVVFPLEL+L NT+ DA   D  Y L AVVVH GSGPN GHY+++VKSH  WL FDD+ VE ID  A++ F+G   + S N++ GYILFY+S
Sbjct:  198 LSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQS 364
[Close]
BLAST of EY660298 vs. ExPASy Swiss-Prot
Match: UBP46_MOUSE (Ubiquitin carboxyl-terminal hydrolase 46 OS=Mus musculus GN=Usp46 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.142e-54
Identity = 102/167 (61.08%), Postives = 128/167 (76.65%), Query Frame = 3 
Query:   78 LSLDIEQNSSITCCFKNNSFTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDA---DIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYES 569
            LS+D+EQN+SIT C ++ S TETL +E K++C+ CCS QEAQKRM++KK P  L +HLKRFKY+EQL RY KLSYRVVFPLEL+L NT+ DA   D  Y L AVVVH GSGPN GHY+++VKSH  WL FDD+ VE ID  A++ F+G   + S N++ GYILFY+S
Sbjct:  198 LSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQS 364
[Close]
BLAST of EY660298 vs. ExPASy Swiss-Prot
Match: UBP46_HUMAN (Ubiquitin carboxyl-terminal hydrolase 46 OS=Homo sapiens GN=USP46 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.142e-54
Identity = 102/167 (61.08%), Postives = 128/167 (76.65%), Query Frame = 3 
Query:   78 LSLDIEQNSSITCCFKNNSFTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDA---DIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYES 569
            LS+D+EQN+SIT C ++ S TETL +E K++C+ CCS QEAQKRM++KK P  L +HLKRFKY+EQL RY KLSYRVVFPLEL+L NT+ DA   D  Y L AVVVH GSGPN GHY+++VKSH  WL FDD+ VE ID  A++ F+G   + S N++ GYILFY+S
Sbjct:  198 LSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQS 364
[Close]
BLAST of EY660298 vs. ExPASy Swiss-Prot
Match: UBP46_DANRE (Ubiquitin carboxyl-terminal hydrolase 46 OS=Danio rerio GN=usp46 PE=3 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 4.340e-54
Identity = 102/167 (61.08%), Postives = 128/167 (76.65%), Query Frame = 3 
Query:   78 LSLDIEQNSSITCCFKNNSFTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDA---DIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYES 569
            LS+D+EQN+SIT C ++ S TETL +E K++C+ CCS QEAQKRM++KK P  L +HLKRFKY+EQL RY KLSYRVVFPLEL+L NT+ DA   D  Y L AVVVH GSGPN GHY+++VKSH  WL FDD+ VE ID  A++ F+G   + S N++ GYILFY+S
Sbjct:  202 LSVDVEQNTSITHCLRDFSNTETLCSEYKYYCEMCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSGDAVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQS 368
[Close]
BLAST of EY660298 vs. ExPASy Swiss-Prot
Match: UBP12_HUMAN (Ubiquitin carboxyl-terminal hydrolase 12 OS=Homo sapiens GN=USP12 PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 2.381e-52
Identity = 100/167 (59.88%), Postives = 127/167 (76.05%), Query Frame = 3 
Query:   78 LSLDIEQNSSITCCFKNNSFTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDA---DIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYES 569
            LS+D+EQN+SIT C +  S TETL +E K++C++C S QEA KRMK+KK P  L +HLKRFKY++QL RY KLSYRVVFPLEL+L NT+ DA   D  Y L AVVVH GSGPN GHY+++VKSH+ WL FDD+ VE ID  A++ F+G   + S N++ GYILFY+S
Sbjct:  202 LSVDVEQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQS 368
[Close]
BLAST of EY660298 vs. ExPASy Swiss-Prot
Match: UBP12_BOVIN (Ubiquitin carboxyl-terminal hydrolase 12 OS=Bos taurus GN=USP12 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.381e-52
Identity = 100/167 (59.88%), Postives = 127/167 (76.05%), Query Frame = 3 
Query:   78 LSLDIEQNSSITCCFKNNSFTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDA---DIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYES 569
            LS+D+EQN+SIT C +  S TETL +E K++C++C S QEA KRMK+KK P  L +HLKRFKY++QL RY KLSYRVVFPLEL+L NT+ DA   D  Y L AVVVH GSGPN GHY+++VKSH+ WL FDD+ VE ID  A++ F+G   + S N++ GYILFY+S
Sbjct:  201 LSVDVEQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQS 367
[Close]
BLAST of EY660298 vs. ExPASy Swiss-Prot
Match: UB12B_XENLA (Ubiquitin carboxyl-terminal hydrolase 12-B OS=Xenopus laevis GN=usp12-B PE=2 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 2.381e-52
Identity = 100/167 (59.88%), Postives = 127/167 (76.05%), Query Frame = 3 
Query:   78 LSLDIEQNSSITCCFKNNSFTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDA---DIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYES 569
            LS+D+EQN+SIT C +  S TETL +E K++C++C S QEA KRMK+KK P  L +HLKRFKY++QL RY KLSYRVVFPLEL+L NT+ DA   D  Y L AVVVH GSGPN GHY+++VKSH+ WL FDD+ VE ID  A++ F+G   + S N++ GYILFY+S
Sbjct:  202 LSVDVEQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQS 368
[Close]
BLAST of EY660298 vs. ExPASy Swiss-Prot
Match: UB12A_XENLA (Ubiquitin carboxyl-terminal hydrolase 12-A OS=Xenopus laevis GN=usp12-A PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.381e-52
Identity = 100/167 (59.88%), Postives = 127/167 (76.05%), Query Frame = 3 
Query:   78 LSLDIEQNSSITCCFKNNSFTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDA---DIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYES 569
            LS+D+EQN+SIT C +  S TETL +E K++C++C S QEA KRMK+KK P  L +HLKRFKY++QL RY KLSYRVVFPLEL+L NT+ DA   D  Y L AVVVH GSGPN GHY+++VKSH+ WL FDD+ VE ID  A++ F+G   + S N++ GYILFY+S
Sbjct:  202 LSVDVEQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQS 368
The following BLAST results are available for this feature:
BLAST of EY660298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
UBP3_ARATH1.806e-8492.22Ubiquitin carboxyl-terminal hydrolase 3 OS=Arabido... [more]
UBP4_ARATH4.919e-8289.22Ubiquitin carboxyl-terminal hydrolase 4 OS=Arabido... [more]
UBP46_PONAB1.142e-5461.08Ubiquitin carboxyl-terminal hydrolase 46 OS=Pongo ... [more]
UBP46_MOUSE1.142e-5461.08Ubiquitin carboxyl-terminal hydrolase 46 OS=Mus mu... [more]
UBP46_HUMAN1.142e-5461.08Ubiquitin carboxyl-terminal hydrolase 46 OS=Homo s... [more]
UBP46_DANRE4.340e-5461.08Ubiquitin carboxyl-terminal hydrolase 46 OS=Danio ... [more]
UBP12_HUMAN2.381e-5259.88Ubiquitin carboxyl-terminal hydrolase 12 OS=Homo s... [more]
UBP12_BOVIN2.381e-5259.88Ubiquitin carboxyl-terminal hydrolase 12 OS=Bos ta... [more]
UB12B_XENLA2.381e-5259.88Ubiquitin carboxyl-terminal hydrolase 12-B OS=Xeno... [more]
UB12A_XENLA2.381e-5259.88Ubiquitin carboxyl-terminal hydrolase 12-A OS=Xeno... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-F11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660298 ID=EY660298; Name=EY660298; organism=Citrus sinensis; type=EST; length=926bp
TCTGGTACGCCTGCAGTCCTGTCCGGAATTCCTTCGACACAGAGGTTTCC
GACAGCCAGGTTTCCAAAAAAGGTGTCTTGAGTCTTGATATTGAACAAAA
TAGTTCTATAACATGTTGCTTCAAAAATAATAGCTTCACAGAGACTTTGA
ATGCTGAAGACAAATTTTTCTGTGATAAATGCTGCAGTTTGCAAGAAGCG
CAGAAGAGGATGAAGATAAAGAAATCTCCCCATACTCTGGTCATTCATCT
TAAGCGATTTAAATACATTGAGCAGCTGGGGCGATACAAGAAGCTATCTT
ACCGTGTTGTCTTTCCGCTTGAGCTGAAGCTTAGCAACACAGCAGAAGAT
GCAGATATTGAGTATTCGCTATTTGCTGTAGTTGTCCATGTAGGCAGTGG
ACCAAACCATGGGCATTATGTCAGTCTCGTGAAAAGTCATAACCACTGGT
TATTTTTTGATGATGAAAATGTGGAGATGATCGATGAGTCTGCTGTGCAG
ACATTTTTTGGATCGGCACAGGAATATTCAAGTAATACGGATCATGGGTA
CATCTTGTTCTATGAAAGCCTTGGTGCTGGTAGCAACAAGAGCTGAGTAG
AGAGACGGGCGGGTTTTGGTTTACAATGATTAGGTATTTTAATCATTCGG
ACTAATTTTTCCTCTGGTGGCTATGGTTATTATTTTCATTTCTTTTGCCT
ACTTCACCCTGTGGAAAGAGCTATCGATGCTATAAAGCGGGTTGTCCAAA
GAATGTTACCTATAGTGGTTCCATGGACAGTGGGGATGGTGGAAGCACAC
TATCCTTTTTTTTTTTTGGCTCCACATAAGAAGGAAAGGAGCACCCCGTA
TTGGGGGGGGGAGATTCTCCAAAAAACAATTCGTATCTTCTATGGGTGAG
AAGGTCAATTTAACCCTAAAGGCCAT
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