EY660294

Overview
NameEY660294
Unique NameEY660294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY660294 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 2 
Query:  221 VMPLCYSYQQTELSDSL*ACPICLTNAKDLAFGCGHMTCRECGSRVSNCPICRQRITNRLRLF 409
            V P  +  +Q   +D +  CPICL+N K++AFGCGH TC ECG  +  CPICR  I  R++L+
Sbjct:  427 VPPYPFESKQMSSADDIQLCPICLSNPKNMAFGCGHQTCCECGPDLKVCPICRAPIQTRIKLY 489
[Close]
BLAST of EY660294 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 2 
Query:  278 CPICLTNAKDLAFGCGHMTCRECGSRVSNCPICRQRITNRLRLF 409
            CPICL+N KD+AFGCGH TC ECG  +  CPICR  I  R++L+
Sbjct:  425 CPICLSNPKDMAFGCGHQTCCECGPDLQMCPICRAPIQTRIKLY 468
The following BLAST results are available for this feature:
BLAST of EY660294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RGLG1_ARATH3.671e-1247.62E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
RGLG2_ARATH2.379e-1161.36E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-F07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660294 ID=EY660294; Name=EY660294; organism=Citrus sinensis; type=EST; length=732bp
CCTTCCACAAACCACGTGTCCGCGCCGTGCTGGCAAGAACGGAATTTAGC
CGTGGTTCAACCCCTGTTGCGGAAACCCAGGTACTGGNTCACCAAAAATG
CTTGCCTTATGAATGTGCACGGCAGCTTGTTTGTTTCAATCAAAAAGTTC
AAAACAGAACGTACAAGGTTCAAAAGTAACTCTGCAATGGACAAGAAATT
GAACTAGACCTTCGTTTATAGTTATGCCACTGTGTTATAGTTATCAGCAA
ACTGAGTTGTCCGATTCACTGTAGGCTTGCCCAATTTGCCTGACCAATGC
AAAGGACTTGGCCTTTGGCTGTGGGCACATGACTTGTCGTGAATGTGGAT
CAAGAGTGTCAAACTGCCCTATATGCCGCCAAAGGATCACCAACCGTCTC
AGGCTGTTTGCTTGATGGCTGTCCGGCAGGAAGATCAAGTACAGAGTGTT
TTAGGAATGCATTTGCGTGTTTTTAGGGATGAAGTTGTACTAAAATGTAC
AGCATAGTTCTATGTTCATCACGCCGAACTCTTGTATTTGATGCTTTAGC
TTGCTTTACTGGCTAGAAGTTATATATTTTATGTTAGCAATTTAATAAAG
ATCACAATAAAAACTCTTGATAAGCTTTCTCATTTGTCAACTTGATGAAA
ATCGCAATAAAATAAAATCTCTTGTAAAAGGNNTNNNGNGNTTCGANGNT
TGTTTTTGAAAGATAAAAAAATAGAAAAGGGC
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