EY660293

Overview
NameEY660293
Unique NameEY660293
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length925
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7549 contig Csv1_Contig7549:1..927. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY660293 vs. ExPASy Swiss-Prot
Match: PR40A_MOUSE (Pre-mRNA-processing factor 40 homolog A OS=Mus musculus GN=Prpf40a PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.367e-12
Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:  241 SAEVAQTDWIEHTAADGXXXXXXXXXXQSTWDKPLVLMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELK 477
            +A  A++ W EH + DG          QSTW+KP  L TP E+  +   WKE+ S  G+ YYYN  TK+S+W+ P EL+
Sbjct:  138 AASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELE 216
[Close]
BLAST of EY660293 vs. ExPASy Swiss-Prot
Match: PR40A_HUMAN (Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens GN=PRPF40A PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.367e-12
Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:  241 SAEVAQTDWIEHTAADGXXXXXXXXXXQSTWDKPLVLMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELK 477
            +A  A++ W EH + DG          QSTW+KP  L TP E+  +   WKE+ S  G+ YYYN  TK+S+W+ P EL+
Sbjct:  138 TASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELE 216
[Close]
BLAST of EY660293 vs. ExPASy Swiss-Prot
Match: YO61_CAEEL (WW domain-containing protein ZK1098.1 OS=Caenorhabditis elegans GN=ZK1098.1 PE=4 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.039e-11
Identity = 34/97 (35.05%), Postives = 53/97 (54.64%), Query Frame = 1 
Query:  241 SAEVAQTDWIEHTAADGXXXXXXXXXXQSTWDKPLVLMTPIERADAAS----DWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGT 519
            S+   ++DW  HT   G          Q++W KP VL TP+ER+ +       WKEF S DG+ YYYN +TK+++W  PD  ++ + + + A+   T
Sbjct:   76 SSPSVESDWSVHTNEKGTPYYHNRVTKQTSWIKPDVLKTPLERSTSGQPQQGQWKEFMSDDGKPYYYNTLTKKTQWVKPDGEEITKGEQKPAAKAAT 172
The following BLAST results are available for this feature:
BLAST of EY660293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PR40A_MOUSE5.367e-1241.77Pre-mRNA-processing factor 40 homolog A OS=Mus mus... [more]
PR40A_HUMAN5.367e-1241.77Pre-mRNA-processing factor 40 homolog A OS=Homo sa... [more]
YO61_CAEEL2.039e-1135.05WW domain-containing protein ZK1098.1 OS=Caenorhab... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-F06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660293 ID=EY660293; Name=EY660293; organism=Citrus sinensis; type=EST; length=925bp
CCTGGTACCCTGCAGACGGTCCGGAATTCTTCGAACACCACTGTCCGCAA
TGGTTTTCACAAAAACGTTAATGCATACTGGGAATCAGTATCAGCCCATG
TCCCTTGGACGTAAAAAAAATTTGCTGGAGGACAACTTGGTGTGTCCATT
AGCCAGAGTACCAGTACACCTCTGCAGCACACCAATGAACAAGTGGCTGC
TAACACTGCCTCCACTATGGCATCTACTTTTCAGCCTAAGTCTGCAGAAG
TGGCCCAAACTGATTGGATAGAGCATACTGCTGCTGACGGAAGAAGATAT
TATTACTACTAGAGGACAAGACAATCTACTTGGGATAAACCTTTGGTATT
AATGACACCAATTGAGAGGGCCGATGCAGCGTCTGACTGGAAGGAATTTA
CAAGTCCTGATGGAAGAAAGTATTACTACAACAAGGTTACCAAGCAGTCA
AAGTGGTCAATACCTGATGAGTTGAAGTTGGCCCGTGAACAAGCAGAAAG
AGCATCTACCAAAGGAACACAGTCAGAAGCATCCCCTAATTTGCAAACAT
CAAATTCTGTTCCTTCGTCAGCGGTTACAGCATCACCTAATGCTGATATC
TCATCTTCAACAGTTCAAGTGGTAGCATCAAGCCCAGTTTCAGTGGTTCC
TATAATTGCTGCCAGCAGTATACAACCTGCAATGGTCTCTGCATCTTCAG
CCTCACCTGTCATTGCTTCNTCTGTGGCAGTGAGTGCAGATGGAATCCAG
ACCACTGTAGATGCTCTTACACAATGACTTCTGTATCTTCAGTGTAGGAG
ATGCTGTAACTGTCAATACGGATTCGGAAAACAAGAATATTTCAGCAACT
TGTCAGCTTCTAATGTGGTTGCTGCCGCAGTTGAAATCCCTGCACAGAGA
CAAAGGAATGCGGAAAAAGCTGTCA
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