EY660284

Overview
NameEY660284
Unique NameEY660284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8813 contig Csv1_Contig8813:547..1258. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFF_ARATH (Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=2 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 3.832e-59
Identity = 114/149 (76.51%), Postives = 124/149 (83.22%), Query Frame = 2 
Query:   35 LQAPENVGQVNPPNRTFVTVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVP----IQRL-SNSSCDDYATRQDSRNLSAGITSVG 466
            LQ+ EN+G  NP + TFV VYKSGSFGRSLDI+KFSSYHELRSELARMFGLEG LEDP+RSGWQLVFVDRENDVLLLGD PWPEFV+SVWCIKILSP EVQQMGKRG ELLNS P    + +L SN +CDD+  R D RNL  GI SVG
Sbjct:  782 LQSSENLGSENPQSNTFVKVYKSGSFGRSLDISKFSSYHELRSELARMFGLEGQLEDPVRSGWQLVFVDRENDVLLLGDDPWPEFVSSVWCIKILSPQEVQQMGKRGLELLNSAPSSNNVDKLPSNGNCDDFGNRSDPRNLGNGIASVG 930
[Close]
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSJ (Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.252e-51
Identity = 103/139 (74.10%), Postives = 118/139 (84.89%), Query Frame = 2 
Query:   62 VNPPNRTFVTVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNSSCDDYATRQDSRNLSAGITSVGSLDF 478
            +N P  TFV VYKSG++GRSLDIT+FSSYHELR EL R+FGLEG LE+PLRSGWQLVFVDRE+DVLL+GD PW EFVNSV CIKILSP EVQQMGK   ELL+S P +RL  SSCDDY +RQ+SR+LS GI SVGS++F
Sbjct:  781 INRPPATFVKVYKSGTYGRSLDITRFSSYHELRRELGRLFGLEGQLENPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGK-PFELLSSAPGKRL-GSSCDDYVSRQESRSLSTGIASVGSVEF 917
[Close]
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSI (Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.252e-51
Identity = 103/139 (74.10%), Postives = 118/139 (84.89%), Query Frame = 2 
Query:   62 VNPPNRTFVTVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNSSCDDYATRQDSRNLSAGITSVGSLDF 478
            +N P  TFV VYKSG++GRSLDIT+FSSYHELR EL R+FGLEG LE+PLRSGWQLVFVDRE+DVLL+GD PW EFVNSV CIKILSP EVQQMGK   ELL+S P +RL  SSCDDY +RQ+SR+LS GI SVGS++F
Sbjct:  781 INRPPATFVKVYKSGTYGRSLDITRFSSYHELRRELGRLFGLEGQLENPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGK-PFELLSSAPGKRL-GSSCDDYVSRQESRSLSTGIASVGSVEF 917
[Close]
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSJ (Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.941e-51
Identity = 103/144 (71.53%), Postives = 118/144 (81.94%), Query Frame = 2 
Query:   47 ENVGQVNPPNRTFVTVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNSSCDDYATRQDSRNLSAGITSVGSLDF 478
            +N  QV  P+ TFV VYKSG+ GR LDIT+FSSYHELRSE+ R+FGLEG LEDPLRSGWQLVFVDRE+DVLL+GD PW EFVNSV CIKILSP EVQQMGK G EL  S   +RL N SCD+Y +RQ+SR+LS GI SVGS++F
Sbjct:  767 DNADQVKRPHATFVKVYKSGTVGRLLDITRFSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGKPGIELF-STSARRLGN-SCDNYMSRQESRSLSTGIASVGSVEF 908
[Close]
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSI (Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.941e-51
Identity = 103/144 (71.53%), Postives = 118/144 (81.94%), Query Frame = 2 
Query:   47 ENVGQVNPPNRTFVTVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNSSCDDYATRQDSRNLSAGITSVGSLDF 478
            +N  QV  P+ TFV VYKSG+ GR LDIT+FSSYHELRSE+ R+FGLEG LEDPLRSGWQLVFVDRE+DVLL+GD PW EFVNSV CIKILSP EVQQMGK G EL  S   +RL N SCD+Y +RQ+SR+LS GI SVGS++F
Sbjct:  767 DNADQVKRPHATFVKVYKSGTVGRLLDITRFSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGKPGIELF-STSARRLGN-SCDNYMSRQESRSLSTGIASVGSVEF 908
[Close]
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFY_ORYSJ (Auxin response factor 25 OS=Oryza sativa subsp. japonica GN=ARF25 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.347e-46
Identity = 91/146 (62.33%), Postives = 111/146 (76.03%), Query Frame = 2 
Query:   44 PENVGQVNPPN-RTFVTVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNSSCDDYATRQDSRNLSAGITSVGSLDF 478
            P N   VNP    TFV VYKSGS GRSLDI++FSSY ELRSEL R+FGLEG LEDP+RSGWQLVFVDREND+LL+GD PW EF NSVWCIKILSP EVQQ+ + G+ LL+S   +   +++CDDY+   + +N++  I SV  LD+
Sbjct:  754 PLNNISVNPSQGATFVKVYKSGSLGRSLDISRFSSYCELRSELERLFGLEGQLEDPVRSGWQLVFVDRENDILLVGDDPWQEFANSVWCIKILSPQEVQQLVRGGDGLLSSPGARMQQSNACDDYSASHNMQNIAGNIASVAPLDY 899
[Close]
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSJ (Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.814e-39
Identity = 75/105 (71.43%), Postives = 88/105 (83.81%), Query Frame = 2 
Query:   47 ENVGQVNPPNRTFVTVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNE 361
            +N G+ +P  RTFV VYKSGS GRSLDIT+FS+Y ELR EL +MFG++G L+DP RSGWQLVFVDRENDVLLLGD PW  FVNSVW IKILSP +V +MGK+GN+
Sbjct:  709 QNTGENDPATRTFVKVYKSGSVGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWESFVNSVWYIKILSPEDVHKMGKQGND 813
[Close]
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSI (Auxin response factor 12 OS=Oryza sativa subsp. indica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.814e-39
Identity = 75/105 (71.43%), Postives = 88/105 (83.81%), Query Frame = 2 
Query:   47 ENVGQVNPPNRTFVTVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNE 361
            +N G+ +P  RTFV VYKSGS GRSLDIT+FS+Y ELR EL +MFG++G L+DP RSGWQLVFVDRENDVLLLGD PW  FVNSVW IKILSP +V +MGK+GN+
Sbjct:  707 QNTGENDPATRTFVKVYKSGSVGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWESFVNSVWYIKILSPEDVHKMGKQGND 811
[Close]
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFH_ARATH (Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 5.385e-37
Identity = 74/102 (72.55%), Postives = 84/102 (82.35%), Query Frame = 2 
Query:   56 GQVNPPNRT--FVTVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRG 355
            GQ+N  N+T  FV VYKSGS GRSLDI++FSSYHELR EL +MF +EG LEDPLRSGWQLVFVD+END+LLLGD PW  FVN+VW IKILSP +V QMG  G
Sbjct:  696 GQINSSNQTKNFVKVYKSGSVGRSLDISRFSSYHELREELGKMFAIEGLLEDPLRSGWQLVFVDKENDILLLGDDPWESFVNNVWYIKILSPEDVHQMGDHG 797
[Close]
BLAST of EY660284 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSJ (Auxin response factor 11 OS=Oryza sativa subsp. japonica GN=ARF11 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.678e-30
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 2 
Query:   62 VNPPNRTFVTVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLN 370
            + PP RT+  V K GS GRS+D+T F +YHELRS +A MFGL+G LE P  S W+LV+VD ENDVLL+GD PW EF+N V CI+ILSP EVQQM + G  +LN
Sbjct:  847 MKPPVRTYTKVQKQGSVGRSIDVTGFRNYHELRSAIACMFGLQGKLEHPGSSEWKLVYVDYENDVLLVGDDPWEEFINCVRCIRILSPSEVQQMSENGMHVLN 949
The following BLAST results are available for this feature:
BLAST of EY660284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
ARFF_ARATH3.832e-5976.51Auxin response factor 6 OS=Arabidopsis thaliana GN... [more]
ARFQ_ORYSJ2.252e-5174.10Auxin response factor 17 OS=Oryza sativa subsp. ja... [more]
ARFQ_ORYSI2.252e-5174.10Auxin response factor 17 OS=Oryza sativa subsp. in... [more]
ARFF_ORYSJ2.941e-5171.53Auxin response factor 6 OS=Oryza sativa subsp. jap... [more]
ARFF_ORYSI2.941e-5171.53Auxin response factor 6 OS=Oryza sativa subsp. ind... [more]
ARFY_ORYSJ6.347e-4662.33Auxin response factor 25 OS=Oryza sativa subsp. ja... [more]
ARFL_ORYSJ9.814e-3971.43Auxin response factor 12 OS=Oryza sativa subsp. ja... [more]
ARFL_ORYSI9.814e-3971.43Auxin response factor 12 OS=Oryza sativa subsp. in... [more]
ARFH_ARATH5.385e-3772.55Auxin response factor 8 OS=Arabidopsis thaliana GN... [more]
ARFK_ORYSJ1.678e-3061.17Auxin response factor 11 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-E07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660284 ID=EY660284; Name=EY660284; organism=Citrus sinensis; type=EST; length=711bp
TGCGAAGACCCACGCGTCCGGATGAATTTTGCTCCTACAGGCTCCAGAAA
ATGTGGGCCAAGTAAACCCACCCAACAGAACCTTCGTTACGGTTTACAAG
TCGGGTTCCTTCGGTAGATCACTGGATATCACCAAATTCAGTAGCTACCA
TGAGCTGCGCAGTGAACTAGCTCGCATGTTTGGCCTTGAAGGCCATTTGG
AGGACCCCCTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAAT
GATGTACTTCTCCTTGGTGATGGCCCCTGGCCGGAGTTTGTAAACAGTGT
GTGGTGTATCAAAATACTCTCACCACCAGAAGTGCAGCAAATGGGCAAAC
GTGGCAATGAGCTTCTGAACTCAGTTCCAATTCAGAGGCTCTCCAACAGC
AGCTGTGATGATTATGCAACCCGGCAGGACTCCAGAAATTTGAGTGCTGG
TATAACATCCGTGGGGTCACTGGATTTCTGATCAATTTAACCAGTTAAGA
TACCATTCTCTCTTCTGTAATATTAGTGTCTGTTTCAATCCACGTAGGGG
TAGCGAGAGGCTACCTAATTTTAGCTTAAAGTTTATATATAAGCTAAACT
GTAATTATAAGATACATTTTCTATTCTGTGGTATGAAATACGCAATCAAT
ATTGATTAGGAGAGTTGTCCATGATGATAGCTGTTCCCCTTTAAAAAAAA
AAAAAAAAAAA
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