EY660178

Overview
NameEY660178
Unique NameEY660178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1030 contig Csv1_Contig1030:462..1154. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY660178 vs. ExPASy Swiss-Prot
Match: H33_VITVI (Histone H3.3 OS=Vitis vinifera PE=2 SV=3)

HSP 1 Score: 206.453 bits (524), Expect = 1.146e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 3 
Query:   12 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 323
            TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   23 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660178 vs. ExPASy Swiss-Prot
Match: H33_TOBAC (Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.146e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 3 
Query:   12 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 323
            TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   23 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660178 vs. ExPASy Swiss-Prot
Match: H33_PINPS (Histone H3.3 OS=Pinus pinaster PE=2 SV=3)

HSP 1 Score: 206.453 bits (524), Expect = 1.146e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 3 
Query:   12 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 323
            TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   23 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660178 vs. ExPASy Swiss-Prot
Match: H33_ORYSJ (Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3 PE=2 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 1.146e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 3 
Query:   12 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 323
            TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   23 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660178 vs. ExPASy Swiss-Prot
Match: H33_ORYSI (Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_011536 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.146e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 3 
Query:   12 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 323
            TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   23 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660178 vs. ExPASy Swiss-Prot
Match: H33_ORYCO (Histone H3.3 OS=Oryza coarctata PE=2 SV=3)

HSP 1 Score: 206.453 bits (524), Expect = 1.146e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 3 
Query:   12 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 323
            TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   23 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660178 vs. ExPASy Swiss-Prot
Match: H33_MEDSA (Histone H3.3 OS=Medicago sativa PE=1 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 1.146e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 3 
Query:   12 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 323
            TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   23 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660178 vs. ExPASy Swiss-Prot
Match: H33_LOLTE (Histone H3.3 OS=Lolium temulentum PE=2 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 1.146e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 3 
Query:   12 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 323
            TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   23 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660178 vs. ExPASy Swiss-Prot
Match: H33_LOLMU (Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=3)

HSP 1 Score: 206.453 bits (524), Expect = 1.146e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 3 
Query:   12 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 323
            TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   23 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of EY660178 vs. ExPASy Swiss-Prot
Match: H33_GOSHI (Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV=3)

HSP 1 Score: 206.453 bits (524), Expect = 1.146e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 3 
Query:   12 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 323
            TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   23 TKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
The following BLAST results are available for this feature:
BLAST of EY660178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
H33_VITVI1.146e-52100.00Histone H3.3 OS=Vitis vinifera PE=2 SV=3[more]
H33_TOBAC1.146e-52100.00Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1[more]
H33_PINPS1.146e-52100.00Histone H3.3 OS=Pinus pinaster PE=2 SV=3[more]
H33_ORYSJ1.146e-52100.00Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3... [more]
H33_ORYSI1.146e-52100.00Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_... [more]
H33_ORYCO1.146e-52100.00Histone H3.3 OS=Oryza coarctata PE=2 SV=3[more]
H33_MEDSA1.146e-52100.00Histone H3.3 OS=Medicago sativa PE=1 SV=2[more]
H33_LOLTE1.146e-52100.00Histone H3.3 OS=Lolium temulentum PE=2 SV=2[more]
H33_LOLMU1.146e-52100.00Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=... [more]
H33_GOSHI1.146e-52100.00Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660178 ID=EY660178; Name=EY660178; organism=Citrus sinensis; type=EST; length=697bp
CCACGCGTCCGACCAAGGCCGCCCGTAAGTCTGCGCCCACCACCGGTGGT
GTTAAGAAGCCTCATCGTTACCGTCCTGGAACCGTCGCCCTTCGAGAAAT
TCGCAAGTACCAGAAGAGTACCGAGCTGCTTATCAGGAAACTCCCATTCC
AGAGACTTGTTCGTGAAATTGCTCAGGACTTTAAGACTGATCTGCGTTTC
CAGAGCCATGCAGTGCTGGCCCTGCAGGAGGCAGCGGAGGCTTACCTTGT
TGGTCTCTTCGAGGACACTAACCTCTGCGCCATTCATGCAAAGCGTGTCA
CTATTATGCCCAAGGACATACAGCTTGCCCGTAGGATCCGTGGCGAGCGT
GCTTAAGCGTAATTGCTGGTTGCTTCAATTTGAATGACTGGAAGGGAAGG
GGGCAGTTGTAATGTGTTAATTTGTACGTGGGGGTTGGTGGGGGGGTAGA
TAGGGGTAGGATTCCAGTAGTTATTAGAATATGGCTTTTGTCATCATCTG
GGTTTGTTTTTGGTGGTGTTTTATAATGTCTATTTGTTGATGATGGGGAT
TTTAATTCGCCATAAGAGACTGGCTTTTATGTGTTCTTTTGGATATCTGT
TGCCACAGTAGTGGTGGTGTTGAACATCTCTATTATTGTGCATCTAATCT
AAGTTTAGTTTGGTTCAAACGAAACGAAGAAAAAAGAAAGCTTAAAG
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