EY660175

Overview
NameEY660175
Unique NameEY660175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660175 vs. ExPASy Swiss-Prot
Match: COG4_ARATH (Conserved oligomeric Golgi complex subunit 4 OS=Arabidopsis thaliana GN=COG4 PE=2 SV=1)

HSP 1 Score: 410.223 bits (1053), Expect = 8.227e-114
Identity = 210/263 (79.85%), Postives = 228/263 (86.69%), Query Frame = 3
Query:    3 NEYQEALQQKTREPNLGAKLFLGGVGVQKTGTEIATALNNMDVSSEYVLKLKHEIEEQCAEVFPTPADREKVKSCLSELGDLSKMFKQILNMGMEQLVATVTPRIRPVLDSVATISYELSEAEYADNEVNDPWVQRLLHAVETNAAWLQPLMTANNYDSFVHLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRALVSHFSSMTQRTVRDKFARLTQMATILNLEK-SLRF*ISGGRLRDYDLETNPAEGRPGLGLKFDFNLE 788
            N+Y EALQQK REPNLGA+LFLGG+GV+ TGTEIATALNNMDVS EY+LKLKHEIEEQC EVFP PADRE++KSCLSELG+LS  FKQ+LN GMEQLVATVTPRIRPVLD+VATISYEL+E EYA+NEVNDPWVQRLLH+VETNAAWLQPLMT+NNYDSF+HLIIDFIVKRLEVIMMQK+FSQLGGLQLDRDTRALVSHFS MTQRTVRDKFARLTQMATILNLEK S      G           PAE R  LGL+ +F  E
Sbjct:  469 NDYHEALQQKIREPNLGARLFLGGIGVENTGTEIATALNNMDVSCEYILKLKHEIEEQCTEVFPAPADRERIKSCLSELGELSSTFKQLLNSGMEQLVATVTPRIRPVLDTVATISYELTETEYAENEVNDPWVQRLLHSVETNAAWLQPLMTSNNYDSFLHLIIDFIVKRLEVIMMQKRFSQLGGLQLDRDTRALVSHFSGMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVEFKPE 731          
BLAST of EY660175 vs. ExPASy Swiss-Prot
Match: COG4_PONAB (Conserved oligomeric Golgi complex subunit 4 OS=Pongo abelii GN=COG4 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.615e-35
Identity = 83/231 (35.93%), Postives = 134/231 (58.01%), Query Frame = 3
Query:  114 LNNMDVSSEYVLKLKHEIEEQCAEVFPTPADRE----KVKSCLSELGDLSKMFKQILNMGMEQLVAT-VTPRIRPVLDSVATISYELSEAEYADNEVNDPWVQRLLHAVETNAAWLQPLMTANNYDSFVHLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRALVSHFSSMTQRTVRDKFARLTQMATILNLEKSLR-F*ISGGRLRDYDLETNPAEGRPGLGLKFDFNLE 788
            LNN++V SE +  LK  +E  C ++F      E    K  SCLS+L  +S  F+ +L  G+ +L +T + P+++P ++S  ++S+ + E E+ D E NDPWVQ+ +  +E   A  +  ++   YDS   L+   +   LE ++++  F++LGGLQ D++ R+L+++ +++T  T+RDKFARL+QMATILNLE+        G           PAE R  L L+ DF  E
Sbjct:  548 LNNVEVCSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQEGLTELNSTAIKPQVQPWINSFFSVSHNIEEEEFNDYEANDPWVQQFILNLEQQMAEFKASLSPVIYDSLTGLMTSLVTVELEKVVLKSTFNRLGGLQFDKELRSLIAYLTTVTTWTIRDKFARLSQMATILNLERVTEILDYWGPNSGPLTWRLTPAEVRQVLALRIDFRSE 778          
BLAST of EY660175 vs. ExPASy Swiss-Prot
Match: COG4_HUMAN (Conserved oligomeric Golgi complex subunit 4 OS=Homo sapiens GN=COG4 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 7.615e-35
Identity = 83/231 (35.93%), Postives = 134/231 (58.01%), Query Frame = 3
Query:  114 LNNMDVSSEYVLKLKHEIEEQCAEVFPTPADRE----KVKSCLSELGDLSKMFKQILNMGMEQLVAT-VTPRIRPVLDSVATISYELSEAEYADNEVNDPWVQRLLHAVETNAAWLQPLMTANNYDSFVHLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRALVSHFSSMTQRTVRDKFARLTQMATILNLEKSLR-F*ISGGRLRDYDLETNPAEGRPGLGLKFDFNLE 788
            LNN++V SE +  LK  +E  C ++F      E    K  SCLS+L  +S  F+ +L  G+ +L +T + P+++P ++S  ++S+ + E E+ D E NDPWVQ+ +  +E   A  +  ++   YDS   L+   +   LE ++++  F++LGGLQ D++ R+L+++ +++T  T+RDKFARL+QMATILNLE+        G           PAE R  L L+ DF  E
Sbjct:  548 LNNVEVCSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQEGLTELNSTAIKPQVQPWINSFFSVSHNIEEEEFNDYEANDPWVQQFILNLEQQMAEFKASLSPVIYDSLTGLMTSLVAVELEKVVLKSTFNRLGGLQFDKELRSLIAYLTTVTTWTIRDKFARLSQMATILNLERVTEILDYWGPNSGPLTWRLTPAEVRQVLALRIDFRSE 778          
BLAST of EY660175 vs. ExPASy Swiss-Prot
Match: COG4_BOVIN (Conserved oligomeric Golgi complex subunit 4 OS=Bos taurus GN=COG4 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.615e-35
Identity = 82/231 (35.50%), Postives = 135/231 (58.44%), Query Frame = 3
Query:  114 LNNMDVSSEYVLKLKHEIEEQCAEVFPTPADRE----KVKSCLSELGDLSKMFKQILNMGMEQLVAT-VTPRIRPVLDSVATISYELSEAEYADNEVNDPWVQRLLHAVETNAAWLQPLMTANNYDSFVHLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRALVSHFSSMTQRTVRDKFARLTQMATILNLEKSLR-F*ISGGRLRDYDLETNPAEGRPGLGLKFDFNLE 788
            LNN++V SE +  LK  +E  C ++F      E    K  SCLS+L  +S  F+ +L  G+ +L +T + P+++P +++  ++S+ + E E++D E NDPWVQ+ +  +E   A  +  ++   YDS   L+   +   LE ++++  F++LGGLQ D++ R+L+++ +++T  T+RDKFARL+QMATILNLE+        G           PAE R  L L+ DF  E
Sbjct:  548 LNNVEVCSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSGKFRDLLQEGLTELNSTAIKPQVQPWINTFLSVSHNIEEEEFSDYEANDPWVQQFILNLEQQMAEFKAGLSPVIYDSLTSLMTSLVAVELEKVVLKSTFNRLGGLQFDKELRSLIAYLTTVTTWTIRDKFARLSQMATILNLERVTEILDYWGANSGPLTWRLTPAEVRQVLALRIDFRSE 778          
BLAST of EY660175 vs. ExPASy Swiss-Prot
Match: COG4_MOUSE (Conserved oligomeric Golgi complex subunit 4 OS=Mus musculus GN=Cog4 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.216e-34
Identity = 82/231 (35.50%), Postives = 134/231 (58.01%), Query Frame = 3
Query:  114 LNNMDVSSEYVLKLKHEIEEQCAEVFPTPADRE----KVKSCLSELGDLSKMFKQILNMGMEQLVAT-VTPRIRPVLDSVATISYELSEAEYADNEVNDPWVQRLLHAVETNAAWLQPLMTANNYDSFVHLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRALVSHFSSMTQRTVRDKFARLTQMATILNLEKSLR-F*ISGGRLRDYDLETNPAEGRPGLGLKFDFNLE 788
            LNN++V SE +  LK  +E  C ++F      E    K  SCLS+L  +S  F+ +L  G+ +L ++ V P+++P +++  ++S+ + E E+ D E NDPWVQ+ +  +E   A  +  ++   YDS   L+   +   LE ++++  F++LGGLQ D++ R+L+++ +++T  T+RDKFARL+QMATILNLE+        G           PAE R  L L+ DF  E
Sbjct:  548 LNNVEVCSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQEGLAELNSSAVKPQVQPWINTFLSVSHSIEEEEFNDYEANDPWVQQFILNLEQQMAEFKASLSPVIYDSLTGLMTSLVAVELEKVVLKSTFNRLGGLQFDKELRSLIAYLTTVTTWTIRDKFARLSQMATILNLERVTEILDYWGANSGPLTWRLTPAEVRQVLALRIDFRNE 778          
BLAST of EY660175 vs. ExPASy Swiss-Prot
Match: COG4_DICDI (Conserved oligomeric Golgi complex subunit 4 OS=Dictyostelium discoideum GN=cog4 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.788e-26
Identity = 60/159 (37.74%), Postives = 102/159 (64.15%), Query Frame = 3
Query:  204 DREKVKSCLSELGDLSKMFKQILNMGMEQLVATVTPRIRPVLDSVATISYELSEAEYADNEVNDPWVQRLLHAVETNAAWLQPLMTANNYDSFVHLIIDFIVKRLE-VIMMQKKFSQLGGLQLDRDTRALVSHFSSMTQRTVRDKFARLTQMATILNLE 677
            DR++V    +E  + SK F +IL   +E L  +V PR++ VL+    ++YE+++ EY +N++NDP+V +    +       Q  ++  NYD  VH  I FI+K++E + + QKKF+ LGGLQ  +D RA+ ++F+ ++Q T+RDKF++L Q+++ L LE
Sbjct:  707 DRDQVNILSNEFLNCSKSFNKILQEEIESLFKSVQPRLKNVLNQFTLVNYEINQLEYDNNDINDPFVLQFTLEISHFFKPFQEHLSNTNYDYLVHQTIQFILKKIEGITIQQKKFTLLGGLQFGKDLRAISTYFTKISQSTIRDKFSKLNQISSFLILE 865          
BLAST of EY660175 vs. ExPASy Swiss-Prot
Match: COG4_DROME (Conserved oligomeric Golgi complex subunit 4 OS=Drosophila melanogaster GN=CG7456 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.102e-25
Identity = 74/231 (32.03%), Postives = 128/231 (55.41%), Query Frame = 3
Query:  114 LNNMDVSSEYVLKLKHEIEEQCAEVFP--TPADREKVKSCLSELGDLSKMFKQILNMGMEQLVATVT-PRIRPVLDSVATISYELSEAEYADNEVNDPWVQRLLHAVETNAAWLQPLMTANNYDSFVHLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRALVSHFSSMTQRTVRDKFARLTQMATILNLEKSLRF*ISGGRLRDYDLET---NPAEGRPGLGLKFDFNLE 788
            LNN D+S+EY+  L   +E++ A  FP  T  +R+ + SCL+EL  +    K  ++ GM+QL ++V  PR+ P ++     S+ L+E E A  E  + +VQ  +  ++      +  ++  NYD+ V ++   +  +LE  + +  F++LGGL LD++ RAL S+ +  T  +VRDK  R++Q+AT+LNL+K            + ++ +    P E R  L L+ DF +E
Sbjct:  539 LNNADISTEYIETLCQTMEQEIAGTFPQTTQVERQMLDSCLTELKAVRDALKATVDFGMQQLRSSVIKPRLNPWINQFLNYSHNLNEEELAAYEAGETFVQFFIVQLDGLLNSFKNSLSPRNYDALVSILATEVTIQLERAIKKISFNRLGGLVLDQEVRALGSYLTGATSWSVRDKMTRISQIATLLNLDKITELSEYWNPENNKEMSSWHLTPNEVRTFLTLRNDFRIE 769          
BLAST of EY660175 vs. ExPASy Swiss-Prot
Match: COG4_CAEEL (Conserved oligomeric Golgi complex subunit 4 OS=Caenorhabditis elegans GN=cogc-4 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.651e-13
Identity = 45/190 (23.68%), Postives = 103/190 (54.21%), Query Frame = 3
Query:  111 ALNNMDVSSEYVLKLKHEIEEQCAEVFPTPADREKVKSCLSELGDLSKMFKQILNMGMEQLVATVTP-RIRPVLDSVATISYELSEAEYADNEVNDPWVQRLLHAVETNAAWLQPLMTANNYDSFVHLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRALVSHFSSMTQRTVRDKFARLTQMATILNLE 677
            ALNN    SE +++L+  +  + A V     ++ K++   +++ + +K    +   G+E+L  +    +I+   D    I  +++  +    E +DP++++ L  ++      +PL+ A+NY + + L    I +++E  + + +F++ G LQLDR+ R + ++ +++   + R+K  RL Q+ ++LN+E
Sbjct:  564 ALNNSAKLSELLIELQKGLITEWAGVKRPDVEKNKLEHSTTQIEESAKKLASLAKHGVEELFKSAFKNKIKQGADPYQEIDRQMTMQDVEYYEAHDPFMEQFLAQIDRLLVENEPLLFADNYQTLLLLTSSEIARQIEQSLAKCQFNRYGALQLDREYRQICAYLTNVAGWSAREKVGRLGQIVSLLNVE 753          
The following BLAST results are available for this feature:
BLAST of EY660175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
COG4_ARATH8.227e-11479.85Conserved oligomeric Golgi complex subunit 4 OS=Ar... [more]
COG4_PONAB7.615e-3535.93Conserved oligomeric Golgi complex subunit 4 OS=Po... [more]
COG4_HUMAN7.615e-3535.93Conserved oligomeric Golgi complex subunit 4 OS=Ho... [more]
COG4_BOVIN7.615e-3535.50Conserved oligomeric Golgi complex subunit 4 OS=Bo... [more]
COG4_MOUSE2.216e-3435.50Conserved oligomeric Golgi complex subunit 4 OS=Mu... [more]
COG4_DICDI3.788e-2637.74Conserved oligomeric Golgi complex subunit 4 OS=Di... [more]
COG4_DROME1.102e-2532.03Conserved oligomeric Golgi complex subunit 4 OS=Dr... [more]
COG4_CAEEL1.651e-1323.68Conserved oligomeric Golgi complex subunit 4 OS=Ca... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660175 ID=EY660175; Name=EY660175; organism=Citrus sinensis; type=EST; length=920bp
GCAATGAATACCAGGAGGCTTTGCAACAAAAAACTAGAGAACCGAACCTT
GGGGCTAAGTTGTTCTTGGGTGGTGTTGGTGTGCAGAAAACCGGGACAGA
GATTGCGACTGCTTTGAATAATATGGATGTGAGTAGCGAGTATGTCCTGA
AGCTAAAACACGAGATCGAAGAGCAATGTGCAGAGGTATTCCCTACACCA
GCTGATAGGGAGAAGGTTAAATCTTGTTTATCTGAGTTGGGCGATTTGAG
CAAAATGTTCAAGCAAATTCTGAATATGGGCATGGAACAACTTGTGGCCA
CTGTGACACCACGAATTCGTCCGGTTTTAGATAGTGTTGCAACCATCAGC
TATGAGCTATCAGAGGCCGAATATGCTGATAATGAGGTTAATGACCCATG
GGTTCAGAGGCTTCTCCATGCTGTTGAGACAAATGCAGCATGGCTGCAAC
CACTGATGACCGCCAACAATTATGACTCATTTGTTCATTTGATCATTGAT
TTTATAGTAAAGAGGCTTGAAGTGATCATGATGCAGAAAAAGTTCAGTCA
GCTTGGTGGCCTGCAGCTCGACAGAGATACAAGGGCTTTGGTAAGCCATT
TCTCTAGCATGACTCAGAGGACTGTCAGAGACAAGTTTGCTCGGCTTACT
CAAATGGCAACAATACTTAACTTAGAAAAGTCTCTGAGATTCTAGATTTC
TGGGGGGAGACTCCGGGACTATGACTTGGAGACTAACCCAGCTGAAGGTA
GACCAGGTCTAGGCCTAAAGTTTGATTTTAACCTAGAGCAATAACCTTTC
GGAGGTTTAATCCATTTTTTACTAATTTCCCATTTTGGATTTCAACCTTT
GGGCCCGCTAAGAATAAAGGAAGACTGGGCAACCCAATTGGTTACTAACA
TTCTTGGACAGGGTTTGCTT
back to top