EY660146

Overview
NameEY660146
Unique NameEY660146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7538 contig Csv1_Contig7538:1..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660146 vs. ExPASy Swiss-Prot
Match: WDR18_BOVIN (WD repeat-containing protein 18 OS=Bos taurus GN=WDR18 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.203e-25
Identity = 71/213 (33.33%), Postives = 114/213 (53.52%), Query Frame = 2
Query:  206 MELLIASSSVADA-GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTLQVWSLLKGKM 838
            ME+ + + S A       W+L SGA  L Y+   + P GLA +   +L ++QL          I  W    K Q++ K +   P+  +  + +G Y+  G  S +IY+WEV++G LL     HY+ V+CL F+ D S  ISG +D  V  WSL +V +   S+  +    H ++ HTL ITD+  G+GG  A + +AS D+T+++W +  G++
Sbjct:    5 MEVAVCTDSAAQLWSCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL------GKNYICAWELQRKDQLQQKIMCPGPVTCLTTSPNGLYVLAG-ISENIYLWEVSTGNLLVILSRHYQDVSCLQFTGDSSHFISGGKDCLVLAWSLCSVLQADPSRTPAP--RHVWSRHTLPITDLHCGFGGPLARVATASLDQTVKLWEVSSGEL 208          
BLAST of EY660146 vs. ExPASy Swiss-Prot
Match: WDR18_RAT (WD repeat-containing protein 18 OS=Rattus norvegicus GN=Wdr18 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 68/215 (31.63%), Postives = 113/215 (52.56%), Query Frame = 2
Query:  206 MELLIASSSVADA-GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS---KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTLQVWSLLKGKM 838
            ME+++ + S A       W+L SGA  L Y+   + P GLA +   +L ++Q         G     +W    K Q++ K +   P+  +    +G Y+  G  +  IY+WEV++G LL     HY+ V+CL F+ DGS  +S  +D  V  WSL +V +   S+  +    H ++ HTL ITD+  G+GG  A + +AS D+T+++W++  G +
Sbjct:    5 MEVVVCTDSAAPLWSCMVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ--------QGKNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVSTGNLLVILSRHYQDVSCLKFTGDGSHFVSAGKDCLVLAWSLCSVLQADPSRILAP--RHVWSQHTLPITDLHCGFGGPMARVATASLDQTMKLWAISSGDL 208          
BLAST of EY660146 vs. ExPASy Swiss-Prot
Match: WDR18_HUMAN (WD repeat-containing protein 18 OS=Homo sapiens GN=WDR18 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.674e-23
Identity = 69/214 (32.24%), Postives = 115/214 (53.74%), Query Frame = 2
Query:  206 MELLIASSSVADAGIGC--WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTLQVWSLLKGKM 838
            ME+ + + S A     C  W+L SGA  L Y+   + P GLA +   +L ++QL          I  W    K Q++ K +   P+  + A+ +G Y+  G  +  I++WEV++G LL     HY+ V+CL F+ D S  ISG +D  V +WSL +V +   S+  +    H ++ H L ITD+  G+GG  A + ++S D+T+++W +  G++
Sbjct:    5 MEVAVCTDSAAPMW-SCIVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL------GKNYISAWELQRKDQLQQKIMCPGPVTCLTASPNGLYVLAG-VAESIHLWEVSTGNLLVILSRHYQDVSCLQFTGDSSHFISGGKDCLVLVWSLCSVLQADPSRIPAP--RHVWSHHALPITDLHCGFGGPLARVATSSLDQTVKLWEVSSGEL 208          
BLAST of EY660146 vs. ExPASy Swiss-Prot
Match: WDR18_MOUSE (WD repeat-containing protein 18 OS=Mus musculus GN=Wdr18 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.085e-22
Identity = 66/215 (30.70%), Postives = 111/215 (51.63%), Query Frame = 2
Query:  206 MELLIASSSVADA-GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS---KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTLQVWSLLKGKM 838
            ME+++ + + A       W+L SGA  L Y+   + P GLA +   +L ++Q         G     +W    K Q++ K +   P+  +    +G Y+  G  +  IY+WEV +G LL     HY+ V+CL F+ DGS  +S  +D     WSL +V +   S+  +    H ++ HTL ITD+  G+GG  A + +AS D+T+++W++  G +
Sbjct:    5 MEVVVCTDAAAQLWSCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ--------QGKNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVCTGNLLVILSRHYQDVSCLKFTGDGSHFVSAGKDCLALAWSLCSVLQADPSRILAP--RHVWSQHTLPITDLHCGFGGPMARVATASLDQTVKLWAISSGDL 208          
BLAST of EY660146 vs. ExPASy Swiss-Prot
Match: IPI3_DEBHA (Pre-rRNA-processing protein IPI3 OS=Debaryomyces hansenii GN=IPI3 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.341e-17
Identity = 46/118 (38.98%), Postives = 72/118 (61.02%), Query Frame = 2
Query:  488 IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIW---SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV--SATIVSASEDRTLQVWSLL 826
            +AGG ++G IY+WE+ASG LL    AHY+A+T + FSQ G+FL+SGS D    +W    L++V+ + E    +     SFT H+L ITD+ I   G+     + + S D TL+++ ++
Sbjct:  121 LAGGSKTGKIYVWELASGNLLCVKEAHYQAITAIKFSQCGTFLVSGSSDARCMVWRTSDLISVYNKDEESSINIKPFASFTDHSLPITDLAISEAGIISDLRLYTVSRDSTLRIYDIM 238          
BLAST of EY660146 vs. ExPASy Swiss-Prot
Match: IPI3_SCHPO (Pre-rRNA-processing protein crb3/ipi3 OS=Schizosaccharomyces pombe GN=crb3 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.895e-17
Identity = 59/218 (27.06%), Postives = 110/218 (50.46%), Query Frame = 2
Query:  206 MELLIASSSVAD---AGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEE---CESQRASHLYLHSFTGHTLRITDIVIGYGG-VSATIVSASEDRTLQVWSLLKGKM 838
            MELL++     +   + + C +L +G     ++  +SP     C     L S+Q   +P  +       ++ K  ++   +  E +  + ++  G+++A G + G++Y+W + SG L+  + AHY+ +T L FS DG  L + S DG V  W + T+ ++    E+  +S   +  F+GH   I  + IG G  VS  + +ASED T+++W +  G +
Sbjct:    1 MELLLSGCEAIEGEPSNVLCHNLHTGTLVSTFRQ-SSPAKNATCTTLNHLLSAQ-HTRPQLN-----IHNFGKEILDQSIILPEILICVQSSPCGSWLAAGTEKGNLYIWSLKSGALIYFFRAHYQPLTILKFSNDGMVLFTASNDGDVFAWLISTLVDQNSTFETSNSSVKAISHFSGHKRSIVSMEIGPGPIVSGRLYTASEDNTIRIWDVSTGNL 211          
BLAST of EY660146 vs. ExPASy Swiss-Prot
Match: IPI3_YARLI (Pre-rRNA-processing protein IPI3 OS=Yarrowia lipolytica GN=IPI3 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.982e-16
Identity = 62/212 (29.25%), Postives = 117/212 (55.19%), Query Frame = 2
Query:  209 ELLIASSSVADAGIGCWDLESGAEQLRYKSCASPPHGLACV-----GQRFLASSQLREQPSASSGSILY-WSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT-IVSASEDRTLQVWSL 823
            EL+I +++     +   DL SG     +K+  + P+    +     G   L S+Q +       G++++ ++W++  V+ + +  E +  +AA++ GT++AGG  SG +++WE+ASG+L+     HY+AVT L F+ DG  L S S+D  V  WSL+T+  + +  +       ++T H L + D+V+G G    T + + S D+T+++W +
Sbjct:    3 ELIIYTTNKGACAV---DLHSGNNITHFKNDETAPNLSVFLTNTPSGNPLLFSAQTK-------GAMMHVYNWNRESVDQQIVLPEKLSCLAASTCGTWLAGGSASGRLFVWELASGKLVFSREVHYQAVTKLAFT-DG-LLFSTSKDARVLGWSLVTMASDPKDCQP----CITWTEHNLGVVDLVVGGGPTRDTRVFTVSTDKTVRIWDV 198          
BLAST of EY660146 vs. ExPASy Swiss-Prot
Match: IPI3_USTMA (Pre-rRNA-processing protein IPI3 OS=Ustilago maydis GN=IPI3 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.678e-15
Identity = 49/161 (30.43%), Postives = 87/161 (54.04%), Query Frame = 2
Query:  368 QPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWS---LLTVFEECESQRASHLY----LHSFTGHTLRITDIVIGYGGV--SATIVSASEDRTLQVWSL 823
            Q  ++  ++  +SW +  +  + +    +  IA + +G  +AGG   G I +W++A+G LL  + AHYR+VT L ++ DG+ L++GSED  + +WS   LL   ++  S   S  +      +   H L ITD+ I  G     A ++S+S D ++++W L
Sbjct:   78 QLESNKAALNIFSWQRDHLLQRIILPSKLSCIACSPNGDLVAGGSFDGRILLWQIATGDLLASFDAHYRSVTVLKWTCDGAGLLTGSEDARILVWSLAGLLAPHDQTSSSITSSEHNPAPYCTLADHNLAITDLDISSGRFPHQAMVLSSSSDASVKLWDL 238          
BLAST of EY660146 vs. ExPASy Swiss-Prot
Match: IPI3_PICST (Pre-rRNA-processing protein IPI3 OS=Pichia stipitis GN=IPI3 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.326e-15
Identity = 47/120 (39.17%), Postives = 74/120 (61.67%), Query Frame = 2
Query:  488 IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIW---SLLTVF--EECESQRASHLYLHSFTGHTLRITDIVIGYGGV--SATIVSASEDRTLQVWSLL 826
            +AGG +SG IY+WE++SG LL    AHY+ VT + FS+ G+FL++GS+D    +W    L+ VF  +  ES R    YL + T +TL +TD+V+   GV     + + S D TL+++ ++
Sbjct:  122 LAGGSKSGKIYVWELSSGSLLCVKEAHYQNVTVVKFSKCGTFLVAGSDDARCTVWKTLDLIAVFDGDNDESSRNFKPYL-AITDNTLAVTDLVLNEPGVINDLKLYTVSRDNTLRIYDII 240          
BLAST of EY660146 vs. ExPASy Swiss-Prot
Match: IPI3_PICGU (Pre-rRNA-processing protein IPI3 OS=Pichia guilliermondii GN=IPI3 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 4.132e-14
Identity = 51/173 (29.48%), Postives = 87/173 (50.29%), Query Frame = 2
Query:  374 SASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGT---------------YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSL--LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS-ATIVSASEDRTLQVWSLLKGKM 838
            + S   I  +SW K   + +    EP+  +A   H +                +AGG  SG +Y+WE++SG L+    AHY+A+  L FS+ G++L+SG  D    +W    L   ++ E+Q+ +     +F  HTL +TDI +  G  S   + S+S+D T++ + +  GK+
Sbjct:   54 AGSKPLITVYSWGKESPDQRIPVPEPLTCMALCKHPSNEKINHKVPTFQLPWLLAGGSASGKLYIWELSSGNLVCVKEAHYQAINVLKFSECGTYLVSGGADARCSVWKTLDLVTIDDPETQKTASAL--TFMDHTLAVTDIWLTTGIRSDIRLYSSSKDGTVRNYDITSGKL 224          
The following BLAST results are available for this feature:
BLAST of EY660146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
WDR18_BOVIN5.203e-2533.33WD repeat-containing protein 18 OS=Bos taurus GN=W... [more]
WDR18_RAT1.281e-2331.63WD repeat-containing protein 18 OS=Rattus norvegic... [more]
WDR18_HUMAN1.674e-2332.24WD repeat-containing protein 18 OS=Homo sapiens GN... [more]
WDR18_MOUSE1.085e-2230.70WD repeat-containing protein 18 OS=Mus musculus GN... [more]
IPI3_DEBHA2.341e-1738.98Pre-rRNA-processing protein IPI3 OS=Debaryomyces h... [more]
IPI3_SCHPO8.895e-1727.06Pre-rRNA-processing protein crb3/ipi3 OS=Schizosac... [more]
IPI3_YARLI1.982e-1629.25Pre-rRNA-processing protein IPI3 OS=Yarrowia lipol... [more]
IPI3_USTMA1.678e-1530.43Pre-rRNA-processing protein IPI3 OS=Ustilago maydi... [more]
IPI3_PICST8.326e-1539.17Pre-rRNA-processing protein IPI3 OS=Pichia stipiti... [more]
IPI3_PICGU4.132e-1429.48Pre-rRNA-processing protein IPI3 OS=Pichia guillie... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-A09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660146 ID=EY660146; Name=EY660146; organism=Citrus sinensis; type=EST; length=887bp
CCACGCGTCCGGTCCGAATTCATTGGCATCTTCATTGTCTCCCCGGGTTT
TATATAACGCCGCCGAAAACTTAGAACTTGTCCAAATTCAGCGGAGGAGT
ATCTTCCGTTACAAAAATATATATACGTGATCTTGATCAAGAACTAGCCG
GCAACCGCACTTCAAATGTGAAAAAAAACAAAACAAACTTGTCAAATCAA
TCAAAATGGAGTTGCTAATCGCATCATCGTCAGTCGCCGATGCCGGTATC
GGGTGCTGGGACCTAGAATCAGGTGCCGAGCAGCTCCGATACAAATCGTG
CGCCTCACCTCCGCACGGACTCGCTTGTGTGGGCCAACGCTTCCTCGCCT
CCTCGCAGCTTCGCGAACAACCTTCCGCCTCGTCCGGTTCCATCCTTTAC
TGGTCCTGGTCCAAGCCTCAGGTAGAAGTGAAGAGCTTACCAGCTGAGCC
GATTAAGCCGATTGCTGCTAATAGCCACGGCACCTATATTGCTGGTGGGG
GTCAATCGGGAGATATCTACATGTGGGAGGTTGCAAGTGGCAGATTATTA
AAGAAGTGGCACGCGCATTATAGGGCCGTTACTTGCTTGGTTTTTTCACA
AGACGGTTCATTTCTGATTTCTGGGTCTGAGGATGGATGTGTTAGAATTT
GGTCACTTCTAACGGTATTTGAGGAGTGTGAAAGCCAGCGGGCAAGCCAT
CTGTATTTGCATAGTTTTACTGGGCACACTCTGCGTATAACTGATATTGT
TATTGGCTATGGAGGAGTTAGTGCAACTATAGTGTCAGCTTCTGAGGATC
GAACTTTGCAGGTGTGGAGCCTATTGAAGGGAAAGATGTGAGAAATATTG
TATTCCCTCAGTAATGATGCATTGCATTGGACCCGCT
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