EY660136

Overview
NameEY660136
Unique NameEY660136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1751 contig Csv1_Contig1751:45..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY660136 vs. ExPASy Swiss-Prot
Match: RHA2B_ARATH (RING-H2 zinc finger protein RHA2b OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.132e-11
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:  544 LSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLGKWLDYLNVTCPLCRTPLIP 771
            LS + +  N N    Y    + ++A  DC VCL++ +   ++  L C H+FHK CL  WL +LN  CPLCR+PL+P
Sbjct:   49 LSVLADQLNLNRLFSYR---YSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121
The following BLAST results are available for this feature:
BLAST of EY660136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RHA2B_ARATH1.132e-1140.79RING-H2 zinc finger protein RHA2b OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-H10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660136 ID=EY660136; Name=EY660136; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGAATTCAAAACATTAAACAACTACTTGCACATGAGATAGT
GTTCTTAGTCTTTTAGATAGACTAAGAAAATTTCAGCTCTTCCTCATCTT
ATTAAACGGTTCTTGATATTTCATCATCAACCCCAACTTTGGGTTGGAAT
TGCTATCTTCTTTTGGCTCTTTTTCAGGATTCTGCAGTCATCATTTTTCC
TTTTTTAAAATTTTCGCTTCTCAGATATCAAGGAAGCAGTCACAAGATTT
TGCTTGATTTCTGATTCAGTATCTCAAATTTAGTACAAAATTGGGTATCT
GTAAATTTAAAATTTTAATTCGAAAACATGGGCCTCGCTAGTATGCCGTC
CGCATCAGAAGGAATGCTATGCTTGATTCTAATGAACACTGCTATGTCAA
TCTCAATCGTCAAAGGCATATTCAGATCAATCCTCAAGGTTGTCGGTTTC
CAGCTTGCTGAATCATCATCGCCACCGTATTCATATTTCGCTTCACCTCA
AGTTGTCTCCGCAGAGCCAAATGATGTAAATTTAAGTCCTCCCCTTAGCT
ATGTTGAGGAGTTCCGAAACCAGAATCCTGCAATCAAGTATGAAACATTG
CTCCATTGTGAAGATGCAGAGCATGACTGTTCTGTGTGTTTGACCGAGTT
TGAGCCTCAATCTGATATCAATAACTTGTCTTGTGGACATTTGTTTCATA
AAGTGTGCTTGGGGAAGTGGCTGGACTATTTGAATGTTACGTGCCCGCTT
TGCAGGACACCTCTAATTCCTTGAGTTGAAGACGATCCCTCTTGCTTCTG
GTGAGAGTGNTTATGAGTTTGTCTGGTTTGAGGAGACTCTATGTACAGCA
TGTAGTGTACAGTATTTACTATGCATCGGCTGGAGTGA
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