EY660091

Overview
NameEY660091
Unique NameEY660091
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7532 contig Csv1_Contig7532:1..890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY660091 vs. ExPASy Swiss-Prot
Match: TTC13_HUMAN (Tetratricopeptide repeat protein 13 OS=Homo sapiens GN=TTC13 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 3.241e-17
Identity = 53/216 (24.54%), Postives = 102/216 (47.22%), Query Frame = 2 
Query:   14 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSTGLGIDPSNIECLYLRASCYHAIGEYREAIK-DYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLXRQDFSVTKQKT-ALLLAADSIG 655
            K+A E+  +A++   +F++A+  L Q Y++L N E A E  Q+ L +++   +               ++A+K+    L ++P N  C Y++   + A+G++ E IK      L+  L   +         Y +E + Y  + +++    ++ID D+   FK++W K L    + E    QP L+  +K   +  Q+F   K +   L+  AD +G
Sbjct:  300 KEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPLPGQKASPEYLKVKYLREYSRYLHAHLDTPLTEYNIDVDLPGSFKDHWAKNL--PFLIEDYEEQPGLQPHIK--DVLHQNFESYKPEVQELICVADRLG 511

HSP 2 Score: 40.4318 bits (93), Expect = 3.241e-17
Identity = 16/31 (51.61%), Postives = 22/31 (70.97%), Query Frame = 1 
Query:  667 YDCPGFLSHRRQHRMAGLAAIEIAQKVSKIW 759
            Y+ PGFL ++R HR  GLAA+E+ Q V + W
Sbjct:  516 YETPGFLPNKRIHRAMGLAALEVMQAVQRTW 546
The following BLAST results are available for this feature:
BLAST of EY660091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TTC13_HUMAN3.241e-1724.54Tetratricopeptide repeat protein 13 OS=Homo sapien... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-D08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660091 ID=EY660091; Name=EY660091; organism=Citrus sinensis; type=EST; length=890bp
CCACGCGTCCGATAAAAAGGCTGAGGAGGCACATTTGAAAGCAATCCAAC
TTGATCGGAATTTCCTTGAGGCATGGGGTCATCTTACCCAGTTCTATCAA
GATCTTGCAAATTCAGAAAAAGCATTGGAATGCCTACAACAAGTTCTATA
TATTGACAAGAGGTTCTCTAAAGCATATCACTTGCGTGGCCTACTGCTTC
ACGGGTTGGGACAGCACAAGAAGGCAATCAAGGATTTATCCACCGGGTTA
GGCATTGATCCCTCAAACATTGAATGCTTATACTTGAGAGCTTCTTGCTA
CCATGCTATTGGAGAATATAGAGAGGCGATCAAGGACTATGATGCCGCAC
TTGATTTGGAACTTGACTCGATGGAGAAATTTGTGCTTCAATGCCTGGCC
TTTTATCAGAAGGAGATTGCTTTGTACACTGCTTCTAAAATCAACAGTGA
GTTTTGCTGGTTTGACATTGATGGAGATATTGATCCCCTCTTCAAGGAAT
ATTGGTGCAAAAGATTGCACCCCAAGAATGTATGTGAAAAGGTTTACAGA
CAGCCTCCCCTGCGTGATTCTCTCAAAAAGGGGAAGCTCANGAGACAAGA
CTTTTCTGTTACAAAGCAGAAGACTGCGCTTCTACTGGCTGCTGATTCAA
TTGGCAAGAAAATTCATATGATTGTCCTGGCTTCTTATCCCATAGGCGTC
AGCATCGTATGGCTGGATTAGCTGCTATCGAAATTGCTCAGAAAGTTTCA
AAAATTTGGCGCTCTTTGCAAGCAGAATGGAAATATTCTAACAGAAGCTC
ATCAAAAAATGGGAAGAGAGCTCGGAGAAAAGATAGATTTATATTGCCAG
CAGAACAGAGGTGNTGCCGGGTGTAGTACAGCAGTTCCTC
back to top