EY659997

Overview
NameEY659997
Unique NameEY659997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659997 vs. ExPASy Swiss-Prot
Match: RBCMT_TOBAC (Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum GN=RBCMT PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.879e-61
Identity = 71/106 (66.98%), Postives = 91/106 (85.85%), Query Frame = 2
Query:  236 VETFWQWLRDQKVVSPKSPIRPATVPEGLGLVAQRDIAKNEAVLEVPMKFWINPDTVAASEIGSLCSGLKPWISVALFLIREKKKEDSPWRVYLDILPECTDSTVF 553
            V+TFWQWL  + VV+ K+P++P  VPEGLGLVA+RDIAK E VL+VP +FWINPD VA SEIG++CSGLKPWISVALFL+REK ++DS W+ Y+D+LP+ TDST++
Sbjct:   57 VQTFWQWLCKEGVVTTKTPVKPGIVPEGLGLVAKRDIAKGETVLQVPKRFWINPDAVAESEIGNVCSGLKPWISVALFLLREKWRDDSKWKYYMDVLPKSTDSTIY 162          

HSP 2 Score: 93.9745 bits (232), Expect = 5.879e-61
Identity = 48/70 (68.57%), Postives = 52/70 (74.29%), Query Frame = 1
Query:  562 SEEELVEXXXXXXXXXXXXVKEYVQNEYLKVEEEIILPNKQLFPRPITLDDFLWAFGILRSRAFSRLRGK 771
            SEEEL E            VK+YVQNE+ KVEEE+IL NKQLFP PITLDDF WAFGILRSRAFSRLR +
Sbjct:  164 SEEELSEIQGTQLLSTTMSVKDYVQNEFQKVEEEVILRNKQLFPFPITLDDFFWAFGILRSRAFSRLRNQ 233          
BLAST of EY659997 vs. ExPASy Swiss-Prot
Match: RBCMT_PEA (Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Pisum sativum GN=RBCMT PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.194e-56
Identity = 65/118 (55.08%), Postives = 92/118 (77.97%), Query Frame = 2
Query:  203 ASATTNPPTAQ-VETFWQWLRDQKVVSPKSPIRPATVPEGLGLVAQRDIAKNEAVLEVPMKFWINPDTVAASEIGSLCSGLKPWISVALFLIREKKKEDSPWRVYLDILPECTDSTVF 553
            AS  T P  +  V+TFW+WL+++ V++ K+P++ + V EGLGLVA +DI++N+ +L+VP + WINPD VAASEIG +CS LKPW+SV LFLIRE+ +EDS W+ Y  ILP+ TDST++
Sbjct:   42 ASVGTEPSLSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIY 159          

HSP 2 Score: 93.9745 bits (232), Expect = 1.194e-56
Identity = 47/70 (67.14%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  562 SEEELVEXXXXXXXXXXXXVKEYVQNEYLKVEEEIILPNKQLFPRPITLDDFLWAFGILRSRAFSRLRGK 771
            SEEEL E            VKEYV+NE LK+E+EIILPNK+LFP P+TLDDF WAFGILRSRAFSRLR +
Sbjct:  161 SEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNE 230          

HSP 3 Score: 23.483 bits (49), Expect = 1.194e-56
Identity = 13/27 (48.15%), Postives = 18/27 (66.67%), Query Frame = 3
Query:  771 NLVLIPLADLIT-IALA*HRRYAYEIK 848
            NLV++P+ADLI   A      +AYE+K
Sbjct:  231 NLVVVPMADLINHSAGVTTEDHAYEVK 257          
BLAST of EY659997 vs. ExPASy Swiss-Prot
Match: RBCMT_ARATH (Probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=RBCMT PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.591e-40
Identity = 81/129 (62.79%), Postives = 98/129 (75.97%), Query Frame = 2
Query:  206 SATTNPPTAQVETFWQWLRDQKVVSPKSPIRPATVPEGLGLVAQRDIAKNEAVLEVPMKFWINPDTVAASEIGSLCSGLKPWISVALFLIREKKKEDSPWRVYLDILPECTDSTVFCAGLKRSLLSFKG 592
            SA+++     V  FW+WLRDQ VVS KS   PA VPEGLGLVA+RDI +NE VLE+P + WINP+TV AS+IG LC GLKPW+SVALFLIREK +E+S WRVYLD+LP+ TDSTVF +  +  L   KG
Sbjct:   39 SASSSELPENVRNFWKWLRDQGVVSGKSVAEPAVVPEGLGLVARRDIGRNEVVLEIPKRLWINPETVTASKIGPLCGGLKPWVSVALFLIREKYEEESSWRVYLDMLPQSTDSTVFWS--EEELAELKG 165          

HSP 2 Score: 92.4337 bits (228), Expect = 3.813e-18
Identity = 56/111 (50.45%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  562 SEEELVEXXXXXXXXXXXXVKEYVQNEYLKVEEEIILPNKQLFPRPITLDDFLWAFGILRSRAFSRLRGKIWF*SPL-QI**P*PWHNTEDMHTRLRSRS-FPQGSLFSLR 888
            SEEEL E            VKEYV+NE+LK+E+EI+LPNK LF   ITLDDF+WAFGIL+SRAFSRLRG+     PL  +    P   TED    ++    F +  LFSL+
Sbjct:  156 SEEELAELKGTQLLSTTLGVKEYVENEFLKLEQEILLPNKDLFSSRITLDDFIWAFGILKSRAFSRLRGQNLVLIPLADLINHNPAIKTEDYAYEIKGAGLFSRDLLFSLK 266          
The following BLAST results are available for this feature:
BLAST of EY659997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RBCMT_TOBAC5.879e-6166.98Ribulose-1,5 bisphosphate carboxylase/oxygenase la... [more]
RBCMT_PEA1.194e-5655.08Ribulose-1,5 bisphosphate carboxylase/oxygenase la... [more]
RBCMT_ARATH1.591e-4062.79Probable ribulose-1,5 bisphosphate carboxylase/oxy... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-D06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659997 ID=EY659997; Name=EY659997; organism=Citrus sinensis; type=EST; length=917bp
TGCAGGACCGGTCCGGAATTCTCCCAAAGAGGGGGCGTNCGAAAAAATTT
CCTAAAACAGGAATTTCTCATTCTCATTATCTACCAGTCCTCCGACATTC
GTTTTCTCCCCAAAAACCCTAAAGCTTCTTACTTCCCTTACCAAAAAACC
ATTTTTTCGTCTAAAAAGCAGAGCTTTTGCAGCAACTTGTTCACTTCATT
CAGCATCAGCAACAACTAACCCACCAACAGCGCAAGTCGAAACCTTCTGG
CAATGGCTCCGCGACCAGAAAGTGGTCTCCCCAAAGTCACCCATAAGGCC
AGCTACAGTCCCAGAAGGACTGGGGTTGGTTGCACAGAGAGACATTGCTA
AAAACGAGGCCGTTTTGGAGGTTCCCATGAAGTTCTGGATAAACCCAGAT
ACGGTTGCAGCTTCAGAGATTGGAAGCTTGTGTAGCGGATTGAAGCCTTG
GATTTCAGTGGCTCTGTTCTTGATCAGAGAAAAAAAGAAGGAGGATTCTC
CTTGGCGGGTTTATCTTGATATTCTTCCCGAGTGTACGGACTCCACTGTG
TTTTGTGCAGGTCTGAAGAGGAGCTTGTTGAGCTTCAAGGGACTCAACTA
TTAAGCACAACTTTAGGTGTGAAAGAATATGTCCAAAACGAATACCTAAA
AGTCGAAGAGGAAATCATACTCCCTAACAAGCAACTATTTCCTCGCCCTA
TCACATTGGATGACTTCTTGTGGGCCTTTGGGATTCTAAGATCGAGAGCA
TTTTCACGTCTTCGTGGTAAAATCTGGTTTTGATCCCCCTTGCAGATTTG
ATAACCATAGCCCTGGCATAACACAGAAGATATGCATACGAGATTAAGGA
GCAGGTCTTTTCCTCAGGGATCTCTATTTTCTTTGCGACTCCTGGTCTGT
TAGGCTGGTGACAGGTT
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