EY659904

Overview
NameEY659904
Unique NameEY659904
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3406 contig Csv1_Contig3406:1060..1948. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659904 vs. ExPASy Swiss-Prot
Match: PEL1_ARATH (Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.950e-44
Identity = 87/119 (73.11%), Postives = 89/119 (74.79%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTLWPMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQCS 400
            RHGYFHVVNNDYT W MYAIGGSANPTINSQGNRY AP N FAKEVTKRVDT AS WKGWNWRSEGDLL NGAYFT                  KSSS+VG ITS AGAL CR+ RQCS
Sbjct:  312 RHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPKNPFAKEVTKRVDTPASHWKGWNWRSEGDLLQNGAYFTSSGAAASGSYARASSLSAKSSSLVGHITSDAGALPCRRGRQCS 430          
BLAST of EY659904 vs. ExPASy Swiss-Prot
Match: PEL15_ARATH (Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.883e-41
Identity = 81/118 (68.64%), Postives = 87/118 (73.73%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTLWPMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 397
            RHGYFHVVNNDYT W MYAIGGSA PTINSQGNRY AP++ FAKEVTKRV+T AS+WK WNWRSEGDLLLNGA+F P                 K SSMV +ITS AGAL CRK R C
Sbjct:  353 RHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYAAPMDRFAKEVTKRVETDASEWKKWNWRSEGDLLLNGAFFRPSGAGASASYGRASSLAAKPSSMVDTITSTAGALGCRKGRPC 470          
BLAST of EY659904 vs. ExPASy Swiss-Prot
Match: PEL8_ARATH (Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 4.126e-38
Identity = 76/118 (64.41%), Postives = 85/118 (72.03%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTLWPMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 397
            RHGYFHVVNNDYT W MYAIGGSA PTINSQGNR+ AP+N FAKEVTKR  T  S+WK WNWRSEGDL LNGA+FT                  KSSS+VG++TS +GAL CR  R+C
Sbjct:  299 RHGYFHVVNNDYTHWEMYAIGGSAGPTINSQGNRFLAPVNPFAKEVTKREYTGESKWKHWNWRSEGDLFLNGAFFTRSGAGAGANYARASSLSAKSSSLVGTMTSYSGALNCRAGRRC 416          
BLAST of EY659904 vs. ExPASy Swiss-Prot
Match: PEL18_ARATH (Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 3.493e-37
Identity = 74/118 (62.71%), Postives = 82/118 (69.49%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTLWPMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 397
            RHGYFHVVNNDYT W MYAIGGSANPTINSQGNR+ AP   F+KEVTK  D   S+WK WNWRS GDLLLNGA+FTP                 K SS+VG +TS +GAL CRK  +C
Sbjct:  291 RHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPNIRFSKEVTKHEDAPESEWKRWNWRSSGDLLLNGAFFTPSGGAASSSYAKASSLGAKPSSLVGPLTSTSGALNCRKGSRC 408          
BLAST of EY659904 vs. ExPASy Swiss-Prot
Match: PEL14_ARATH (Putative pectate lyase 14 OS=Arabidopsis thaliana GN=At4g13210 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.493e-37
Identity = 74/118 (62.71%), Postives = 81/118 (68.64%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTLWPMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 397
            RHGYFHVVNNDYT W MYAIGGSANPTINSQGNR+ AP N FAKEVTKRV     +W  WNWRS+GDL+LNGAYFT                  KSSS+VG +TS +GAL CR    C
Sbjct:  301 RHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPGNRFAKEVTKRVGAGKGEWNNWNWRSQGDLMLNGAYFTSSGAGASANYARASSLAAKSSSLVGMLTSSSGALKCRIGTLC 418          
BLAST of EY659904 vs. ExPASy Swiss-Prot
Match: PEL20_ARATH (Probable pectate lyase 20 OS=Arabidopsis thaliana GN=At5g48900 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.782e-37
Identity = 76/118 (64.41%), Postives = 81/118 (68.64%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTLWPMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 397
            RHGYFHVVNNDYT W MYAIGGSA+PTINSQGNRY AP N FAKEVTKR      QW+ WNWRSEGDL LNGA+FT                  KSSS+VG IT  AGAL CR  R+C
Sbjct:  300 RHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRYLAPRNRFAKEVTKRDYAGQWQWRHWNWRSEGDLFLNGAFFTRSGSGLGASYARASSLAAKSSSLVGVITYNAGALNCRGGRRC 417          
BLAST of EY659904 vs. ExPASy Swiss-Prot
Match: PEL9_ARATH (Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.862e-36
Identity = 73/118 (61.86%), Postives = 85/118 (72.03%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTLWPMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 397
            RHGYFHVVNNDYT W MYAIGGSANPTINSQGNR+ AP N  AKEVTKR+DT  ++W  WNWRSE DLL+NGA+FTP                 K +SMV +IT+ AGAL+CR+ + C
Sbjct:  335 RHGYFHVVNNDYTHWKMYAIGGSANPTINSQGNRFAAPKNHSAKEVTKRLDTKGNEWMEWNWRSEKDLLVNGAFFTP-SGEGASGDSQTLSLPAKPASMVDAITASAGALSCRRGKPC 451          
BLAST of EY659904 vs. ExPASy Swiss-Prot
Match: PEL5_ARATH (Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 3.269e-35
Identity = 72/118 (61.02%), Postives = 80/118 (67.80%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTLWPMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 397
            RHGYFHVVNNDYT W MYAIGGSA PTINSQGNR+ AP +   KEVTK  D   S+WK WNWRSEGDL LNGA+FTP                 + SS+V S+TS AGAL CRK  +C
Sbjct:  291 RHGYFHVVNNDYTHWQMYAIGGSAAPTINSQGNRFLAPNDHVFKEVTKYEDAPRSKWKKWNWRSEGDLFLNGAFFTPSGGGASSSYAKASSLSARPSSLVASVTSNAGALFCRKGSRC 408          
BLAST of EY659904 vs. ExPASy Swiss-Prot
Match: PEL10_ARATH (Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 4.270e-35
Identity = 71/118 (60.17%), Postives = 81/118 (68.64%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTLWPMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 397
            RHGYFHVVNNDYT W MYAIGGSANPTINSQGNR+ AP N FAKEVTKRV +   +WK WNWRS+GDL+LNGAYFT                  K +S+V  +T  +GAL CR   +C
Sbjct:  323 RHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRFLAPGNPFAKEVTKRVGSWQGEWKQWNWRSQGDLMLNGAYFTKSGAAAPASYARASSLGAKPASVVSMLTYSSGALKCRIGMRC 440          
BLAST of EY659904 vs. ExPASy Swiss-Prot
Match: PEL11_ARATH (Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.577e-35
Identity = 70/118 (59.32%), Postives = 81/118 (68.64%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTLWPMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 397
            RHGYFHVVNNDYT W MYAIGGSA+PTI SQGNR+ AP   F KEVTK  D   S+W+ WNWRSEGD+LLNGAYF                   + SS+VGSIT+ AG L+CR+ R+C
Sbjct:  292 RHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPNTRFNKEVTKHEDAPESKWRDWNWRSEGDMLLNGAYFRESGAEAPSTYARASSLSARPSSLVGSITTTAGTLSCRRGRRC 409          
The following BLAST results are available for this feature:
BLAST of EY659904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PEL1_ARATH2.950e-4473.11Probable pectate lyase 1 OS=Arabidopsis thaliana G... [more]
PEL15_ARATH8.883e-4168.64Probable pectate lyase 15 OS=Arabidopsis thaliana ... [more]
PEL8_ARATH4.126e-3864.41Probable pectate lyase 8 OS=Arabidopsis thaliana G... [more]
PEL18_ARATH3.493e-3762.71Probable pectate lyase 18 OS=Arabidopsis thaliana ... [more]
PEL14_ARATH3.493e-3762.71Putative pectate lyase 14 OS=Arabidopsis thaliana ... [more]
PEL20_ARATH7.782e-3764.41Probable pectate lyase 20 OS=Arabidopsis thaliana ... [more]
PEL9_ARATH3.862e-3661.86Probable pectate lyase 9 OS=Arabidopsis thaliana G... [more]
PEL5_ARATH3.269e-3561.02Probable pectate lyase 5 OS=Arabidopsis thaliana G... [more]
PEL10_ARATH4.270e-3560.17Probable pectate lyase 10 OS=Arabidopsis thaliana ... [more]
PEL11_ARATH5.577e-3559.32Putative pectate lyase 11 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-D06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659904 ID=EY659904; Name=EY659904; organism=Citrus sinensis; type=EST; length=890bp
TTTCAAAGAAGGCGCGTCCGCTCATTCTTGACTAGAAAAGAGGAGACATG
GTTATTTCCATGTGGTGAACAATGACTACACTCTCTGGCCCATGTATGCC
ATTGGTGGAAGTGCAAACCCCACCATCAACAGCCAGGGAAACAGATACAA
TGCTCCATTGAATGCCTTCGCAAAGGAGGTAACAAAGAGGGTGGACACAG
CTGCAAGCCAGTGGAAGGGCTGGAACTGGAGATCTGAAGGAGACCTCTTG
CTGAACGGTGCCTACTTTACCCCATCCGGAGCAGGAGCCTCAGCTAGCTA
TGCTCGTGCTTCAAGCTTGGGAGCCAAGTCTTCCTCCATGGTTGGATCCA
TTACTTCTGGTGCTGGTGCTCTTACTTGCCGCAAGAGCCGTCAGTGCTCA
TAGTATTCATCATTAAATTGGCCGAAAAAAGAAATGGCCATCGAATTTCT
GTTTTGTTTTTCATTTTTCTTCTATATAGTATATCACCTATCCAATTTAT
CCACAATCTGGTCATTGTTTCAATCTCTACCGTATATCTGCTTCACATAT
TTTGACAAGTGTACATTATTGCACATGTCATTGTATTGCCTCACCCAGTT
TGTTTATCAGTTACTTGCTCAACCTCGGCCTGCTTCAACTGAAAAAACAA
ACATTTGCATTCCCAGAAGCAGGTGCGGAAGTGTTGTTCATTTTATTTTC
CCTCTTTGGCCTCTTTTTTCAGCCTCAATTCTCATTTCCTTCTAACTAGC
ACTTGNCTATTTGTGTCCAGTGTCAGTCAGCTGTCAACTGTCAATCTTGG
TCTCTCTACATACTCTCTTTTTCATTTTTGGCTTTTGGGGTTATAGGGTC
GGAATGATTTTGTGCTTTTTCTCCCGCCTCTTTGTTGTGC
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