EY659811

Overview
NameEY659811
Unique NameEY659811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY659811 vs. ExPASy Swiss-Prot
Match: SKI25_ARATH (F-box/kelch-repeat protein SKIP25 OS=Arabidopsis thaliana GN=SKIP25 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.679e-28
Identity = 61/128 (47.66%), Postives = 84/128 (65.62%), Query Frame = 2 
Query:   20 LPVFPKKRSGKLILLAATTHKFFPPLSRPLIFDPICRTWTFGPELVTPRRWCAVGCSRGGVYVARGIGSQFSSDVERSADKWDLMNGEKNS---RWEKTGELMDGRLIREAIDAVGWKGKLCLLNVEG 394
            LP+     +GKLIL+A +  +  P +S PLIFDPI  +W+ GP + +PRRWCA G   G +Y+A GI SQFSS V +S +K DL    +N+    WEK  ++ D R  REAIDAVG++ KL ++NV+G
Sbjct:  136 LPIQCVSAAGKLILIAGSNQQLSPAISHPLIFDPISSSWSSGPRIGSPRRWCATGACDGAIYIASGISSQFSSTVAKSVEKLDLTEQNRNNHRFNWEKLRDMRDLRFSREAIDAVGYRRKLLMVNVKG 263
The following BLAST results are available for this feature:
BLAST of EY659811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKI25_ARATH2.679e-2847.66F-box/kelch-repeat protein SKIP25 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659811 ID=EY659811; Name=EY659811; organism=Citrus sinensis; type=EST; length=834bp
TCAACAAAGAGGCGTCCGACTACCCGTTTTCCCCAAAAAGAGGTCCGGTA
AGCTCATCCTCCTCGCCGCCACCACCCACAAATTCTTTCCCCCGCTGAGC
CGCCCTCTCATCTTCGACCCCATTTGCCGGACCTGGACGTTCGGCCCCGA
GCTCGTCACCCCGCGCCGGTGGTGCGCGGTGGGGTGCTCTCGTGGCGGGG
TGTATGTTGCCAGAGGGATCGGATCCCAGTTCTCTAGCGACGTGGAGAGG
TCCGCGGATAAATGGGACTTGATGAACGGGGAAAAAAACTCCAGGTGGGA
GAAGACGGGGGAGCTGATGGACGGGAGGCTCATCAGGGAGGCGATAGACG
CGGTGGGGTGGAAGGGAAAGCTGTGCTTGCTCAATGTGGAGGGCGCTGAA
TGTGCAGGTACTACGTCGACGCAAACACGTGTGACGACATGCAGAAGGGG
ATGGTGATAGGGTGCAGGCTGACCGAATGCCATCCGCTTGACGAGTGCTG
CCCAGGATTGCGCATACCTTCGCCCTCTGTTGATGTACTATTGACACTGG
ACACTGACTGGTCGTGGCATAAGCGACCTGCTCTACGACTGCGAAAGGGG
TTGCTGATGAGGCCTACTCTTGCTGAAGCGGACTATATTAGGGTTTGTCC
TGGACGCTGAGAAGATTCCTGGTATTCGACTATCTTGGTGTAGATACTCC
AAGGAGGGTTGAGGCTCCCTGGGCTTGTCCTTGCGGGGAGTTCCACCTGG
CACTACTGAAGGGCTGGAGGGGGAAATCATCTCCACCCTGTTCCGTGTGA
AAACATTTTCTGGCATGAACAAGGATTACTGTAC
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