EY659347

Overview
NameEY659347
Unique NameEY659347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659347_ssr173 microsatellite EY659347_ssr173:173..184. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7710 contig Csv1_Contig7710:828..1319. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY659347 vs. ExPASy Swiss-Prot
Match: THF1_ARATH (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.079e-14
Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:   31 SQPTVLEKLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXXEYVDXXXXXXXXXTEPQKANEAIKKCLGEYLYS 255
            + PTVL+KLCA LN+NK+SVDRDLDVYRN             EYV+          + QKANE I KCLG+ LY+
Sbjct:  217 TDPTVLDKLCASLNINKKSVDRDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGDTLYN 291
[Close]
BLAST of EY659347 vs. ExPASy Swiss-Prot
Match: THF1_SOLTU (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.131e-13
Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:   31 SQPTVLEKLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXXEYVDXXXXXXXXXTEPQKANEAIKKCLGEYLYS 255
            + PT+LEKLCA LNVNK+SVDRDLDVYRN             EYV+          E QKANE + KCLG+Y Y+
Sbjct:  218 TDPTILEKLCAALNVNKKSVDRDLDVYRNLLSKLVQAKELLKEYVE-REKKKRGERETQKANETVTKCLGDYQYA 291
[Close]
BLAST of EY659347 vs. ExPASy Swiss-Prot
Match: THF1_ORYSJ (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=THF1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:   31 SQPTVLEKLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXXEYVDXXXXXXXXXTEPQKANEAIKK 231
            ++PT+L+KLCA LN+NKRSVDRDLDVYRN             EYV+         +E  K+NEA+ K
Sbjct:  211 TEPTILDKLCAALNINKRSVDRDLDVYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTK 277
The following BLAST results are available for this feature:
BLAST of EY659347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
THF1_ARATH5.079e-1450.67Protein THYLAKOID FORMATION 1, chloroplastic OS=Ar... [more]
THF1_SOLTU1.131e-1352.00Protein THYLAKOID FORMATION1, chloroplastic OS=Sol... [more]
THF1_ORYSJ8.965e-1147.76Protein THYLAKOID FORMATION1, chloroplastic OS=Ory... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-B08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659347 ID=EY659347; Name=EY659347; organism=Citrus sinensis; type=EST; length=492bp
TTCGGTAGACCCACGCGTCCGCAAATGCAATCTCAACCCACAGTGTTAGA
AAAGCTTTGTGCAGTCTTAAATGTTAACAAAAGAAGTGTGGATCGTGACC
TTGATGTATATCGCAATTTATTATCCAAGCTGCTTCAAGCTAAAGAGTTG
CTGAAGGAGTATGTGGATAGGGAGAAGAAGAAGAGAGAAGAAAGGACAGA
ACCGCAAAAGGCTAATGAAGCCATTAAAAAATGTCTGGGAGAATACCTAT
ATTCCCATCAGTAATTCAACCTGTGAAGGAAGCCGGCAATGCTAATCATC
TCTTGTGAAGTTTCCATCCCGTTTTTGTCTGCTTTGTGGTAGAGTTGGAG
CCTCAATGCTCCATGTACCATGTTTTAAGCTTACAGGCTTGCATGTTTCA
GTGTACTGTTTTTAATACGGTGATTTACATACATCCAGTCTTCACCATGC
TAATACACAAATTTCTTCTGTTTTAAAAAAAAAAAAAAAAAA
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