EY659310

Overview
NameEY659310
Unique NameEY659310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10785 contig Csv1_Contig10785:1154..1745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY659310 vs. ExPASy Swiss-Prot
Match: SGAT_ARATH (Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana GN=AGT1 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.022e-34
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 3 
Query:    3 HINSS*IVRRAWQRYNLSLCLGLNKVAGKVFIIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMIPSRI 260
            HI+ S IVRRAWQRYNLSL LGLNKVAGKVF IGHLG++NELQLLGCLAGVEMILKDVGYPV +GSGVAAAS YLQ++IP+IPSRI
Sbjct:  316 HIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI 401
[Close]
BLAST of EY659310 vs. ExPASy Swiss-Prot
Match: SGAA_METEA (Serine--glyoxylate aminotransferase OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=sgaA PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.313e-17
Identity = 45/77 (58.44%), Postives = 59/77 (76.62%), Query Frame = 3 
Query:    6 INSS*IVRRAWQRYNLSLCLGLNKVAGKVFIIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNN 236
            ++++ I++ A+ RYNL+L  GL++VAGKVF IGH+G LNEL LLG +AG EM L D G  V  GSGVAAAS+YL+ N
Sbjct:  321 VDAAKIIKHAYVRYNLALGAGLSQVAGKVFRIGHVGDLNELSLLGAIAGAEMSLIDNGVKVTPGSGVAAASSYLREN 397
[Close]
BLAST of EY659310 vs. ExPASy Swiss-Prot
Match: SGAA_HYPME (Serine--glyoxylate aminotransferase OS=Hyphomicrobium methylovorum GN=sgaA PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.037e-15
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 3 
Query:    6 INSS*IVRRAWQRYNLSLCLGLNKVAGKVFIIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNN 236
            I+S+ I + A+ RYN S  LGLNKVAGKVF IGHLG L+E+ + G L   EM LKD G  +KLGSG  AA+ Y   N
Sbjct:  313 IDSNAITKTAYYRYNTSFGLGLNKVAGKVFRIGHLGMLDEVMIGGALFAAEMALKDNGVNLKLGSGTGAAAEYFSKN 389
The following BLAST results are available for this feature:
BLAST of EY659310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SGAT_ARATH1.022e-3484.88Serine--glyoxylate aminotransferase OS=Arabidopsis... [more]
SGAA_METEA4.313e-1758.44Serine--glyoxylate aminotransferase OS=Methylobact... [more]
SGAA_HYPME4.037e-1555.84Serine--glyoxylate aminotransferase OS=Hyphomicrob... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-008-G02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659310 ID=EY659310; Name=EY659310; organism=Citrus sinensis; type=EST; length=592bp
CACATATCAATAGTTCATAAATTGTTAGAAGGGCATGGCAGAGATACAAT
CTAAGCTTATGTCTGGGCCTTAACAAAGTTGCTGGTAAAGTATTTATAAT
CGGGCATCTCGGCCACCTGAATGAGTTGCAATTGTTGGGCTGTCTCGCTG
GTGTGGAGATGATACTAAAAGACGTGGGCTACCCGGTTAAGCTGGGAAGC
GGGGTTGCAGCTGCTTCTGCGTACCTACAGAACAACATTCCTATGATCCC
ATCCAGGATCTGAGTCATCTTTCATCAATGTAATTATTTCTCTTCTATTC
ATGCGCTTCAGGTCACTATGTACAAAGAATGTATAATTTCCTATGCTTGC
TCTTATTAGAGGCTCACCGAGAAAACTCTCCCTTAATCATTGCTTCCTGT
ATTGTGATGTACTTGAAACGTCTTATTAGTCCAGCCAAGTATTTTATTTT
TTCTTAGCAGATTCTGAGTATCATTTATGCTCTTTTGCTCTGTTTTTGCT
TGGAAGCCAAATGCGGGGGCAAAATATTTTGAAATGGCTCACATAAATAA
ATTTCTTTTCCGCTGAATCAAAAAAATAAAAAAAAAGGCGGG
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