EY659135

Overview
NameEY659135
Unique NameEY659135
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY659135 vs. ExPASy Swiss-Prot
Match: SKI25_ARATH (F-box/kelch-repeat protein SKIP25 OS=Arabidopsis thaliana GN=SKIP25 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.894e-49
Identity = 109/230 (47.39%), Postives = 139/230 (60.43%), Query Frame = 3 
Query:  171 IAHLCLSHVH-PSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSS---STPIHLFTFDPVSSTW-DXXXXXXXXXXXXXXXXXXSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEXNS---RWEKTXELKDGRFSREAINXXGVEGKLCWXNVK---XAEXAVY 827
            I+ +CLS VH PS+L  VC  WRRL+YSP FP F SLYALF   ++ +   +  +    F+PVSS W                    SF+S NLP+Q VS +GKLIL+A +    +PA++ PLIFDPI  +W+ GP + +PRRWCA G   GA+Y+ASGI SQFSS VAKSVEK DL     N+    WEK  +++D RFSREAI+  G   KL   NVK     E A+Y
Sbjct:   43 ISEICLSLVHRPSLLSAVCTRWRRLLYSPEFPSFPSLYALFVDSTSDTGRVNPSVRFMCFNPVSSKWYPLPPPPPDPPLHRILYRHPSFISFNLPIQCVSAAGKLILIAGSNQQLSPAISHPLIFDPISSSWSSGPRIGSPRRWCATGACDGAIYIASGISSQFSSTVAKSVEKLDLTEQNRNNHRFNWEKLRDMRDLRFSREAIDAVGYRRKLLMVNVKGDAVKEGAIY 272
The following BLAST results are available for this feature:
BLAST of EY659135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKI25_ARATH2.894e-4947.39F-box/kelch-repeat protein SKIP25 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-G07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659135 ID=EY659135; Name=EY659135; organism=Citrus sinensis; type=EST; length=864bp
CACGCGTCCGCTTTCCCCTTGCCATGTCCAAATACCGGCTCACCATTTCT
TCTAAACGCCAAAAACTAACACAAACACTGACCACGCAACCTCTAGCTCA
GGATCAAGATAAAGCTCAAGACGATGATGGTGATGATCATCAGCCACTGC
TTCCGGGCTTACCCGATCACATAGCTCACCTCTGCCTCTCCCACGTCCAC
CCATCAATCCTCCACAACGTCTGCCACTCCTGGCGTCGCCTCATTTACTC
CCCTTCTTTCCCTCCTTTCCTCTCCCTGTACGCCCTCTTCTCTCCTAAAT
CGAACTCTTCTTCTACTCCAATCCATTTATTCACTTTCGATCCCGTCTCC
TCTACCTGGGACCCGCTCCCTCGTCCGCCCCCGGACCCGCCTCTCCACCT
CATTCTCCACCACCCTTCTTTCCTCTCCCGCAACCTCCCCGTCCAGTTAG
TCTCCCTCTCCGGCAAGCTCATCCTCCTCGCCGCCACCACCCACAACTTC
AACCCGGCGCTGACCCGCCCTCTCATCTTCGACCCCATTTGCCGGACCTG
GACGTTCGGCCCCGAGCTCGTCACCCCGCGCCGGTGGTGCGCGGCGGGGT
GCTCTCGTGGCGCGGTGTATGTTGCCAGCGGGATCGGATCCCAGTTCTCT
AGCGACGTGGCGAAGTCCGTGGAGAAATGGGACTTGATGAACGGGGAAAN
NAACTCGAGGTGGGAGAAGACGGNNGAGCTGAAAGACGGGAGGTTCAGCA
GGGAAGCGATAAACNNCGNTGGGGTGGAAGGGAAGCTGTGCTGGNTCAAT
GTGAAGGNCGCTGAANGTGCCGTCTACACGTCNTCGCGACACGTGGGACG
ACTGCNGAAGGGAT
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