EY679648

Overview
NameEY679648
Unique NameEY679648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8619 contig Csv1_Contig8619:1..858. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of EY679648 vs. ExPASy Swiss-Prot
Match: FOLC_ECOLI (Bifunctional protein folC OS=Escherichia coli (strain K12) GN=folC PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.536e-26
Identity = 57/106 (53.77%), Postives = 75/106 (70.75%), Query Frame = -3
Query:    1 LGEWLAYLEQLHPSAIDMGLERSQQVAARLGLGRPAPRVITVTGTNGKGSTCAFVAALLQAQGLKVGVYNSPHLLRYNERVQLNGVEATDEQLCEAFAALDTGRGE 318
            L  WL+YLE LH   ID+GLER   VAARLG+ +PAP V TV GTNGKG+TC  + ++L A G KVGVY+SPHL+RY ERV++ G E  +     +FA +++ RG+
Sbjct:   13 LASWLSYLENLHSKTIDLGLERVSLVAARLGVLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIESARGD 118          
BLAST of EY679648 vs. ExPASy Swiss-Prot
Match: FOLC_HAEIN (Folylpolyglutamate synthase OS=Haemophilus influenzae GN=folC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.203e-24
Identity = 55/106 (51.89%), Postives = 72/106 (67.92%), Query Frame = -3
Query:    1 LGEWLAYLEQLHPSAIDMGLERSQQVAARLGLGRPAPRVITVTGTNGKGSTCAFVAALLQAQGLKVGVYNSPHLLRYNERVQLNGVEATDEQLCEAFAALDTGRGE 318
            L EWL+YLE+ H   ID+GL+R + VA +L L  P P VITV GTNGKG+TC  +  +L   GL+VGVY+SPHLLRYNERV++   +  DE    +FA +D  + E
Sbjct:   12 LAEWLSYLEKSHFKPIDLGLDRIKSVAEKLDLLHPVPYVITVGGTNGKGTTCRLLETILLNHGLRVGVYSSPHLLRYNERVRIQNQDLPDEAHTASFAFIDENKTE 117          
BLAST of EY679648 vs. ExPASy Swiss-Prot
Match: FOLC_BUCBP (Bifunctional protein folC OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=folC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.033e-14
Identity = 43/88 (48.86%), Postives = 54/88 (61.36%), Query Frame = -3
Query:   58 TLGEWLAYLEQLHPSAIDMGLERSQQVAARLGLGRPAPRVITVTGTNGKGSTCAFVAALLQAQGLKVGVYNSPHLLRYNERVQLNGVE 321
            +L EWL YL+      ID  L R   VA +LG+ +    V  V GTNGKGSTC  +  LL   G +VG+Y SPHL+RY ERV++NG E
Sbjct:   11 SLYEWLYYLDHFMLDNIDPTLNRVFYVAKKLGVLKSKAFVFIVGGTNGKGSTCHVLENLLLNSGYRVGLYTSPHLMRYTERVRINGFE 98          
BLAST of EY679648 vs. ExPASy Swiss-Prot
Match: FOLC_BUCAI (Bifunctional protein folC OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=folC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.005e-14
Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = -3
Query:    7 TLGEWLAYLEQLHPSAIDMGLERSQQVAARLGLGRPAPRVITVTGTNGKGSTCAFVAALLQAQGLKVGVYNSPHLLRYNERVQLNGVEATDEQLCEAFAALDTGR 321
            +L  WL YLEQL    I   L   + +A +LGL +    + TV GTNGKG+TCA +  LL   G +VG+Y SPHL+ + ERV++NG    +E+  ++F  ++  R
Sbjct:    7 SLSLWLKYLEQLDKKRI-YNLTELKFLAKKLGLLKSESFIFTVAGTNGKGTTCAVLERLLLDSGYQVGLYTSPHLINFVERVRINGFVLHEEEHIDSFQNVELVR 110          
BLAST of EY679648 vs. ExPASy Swiss-Prot
Match: FOLC_BUCAP (Bifunctional protein folC OS=Buchnera aphidicola subsp. Schizaphis graminum GN=folC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.544e-13
Identity = 40/111 (36.04%), Postives = 62/111 (55.86%), Query Frame = -3
Query:    4 HMTQRTLGEWLAYLEQLHPSAIDMGLERSQQVAARLGLGRPAPRVITVTGTNGKGSTCAFVAALLQAQGLKVGVYNSPHLLRYNERVQLNGVEATDEQLCEAFAALDTGRG 336
            H  + T   W+ YLE+         L   + +A +LGL        TV GTNGKG+TCA +  LL   G +VG+Y SPHL+ Y+ER+++NG+  +++    +F  +D  +G
Sbjct:    2 HKKKYTFSMWMKYLEKFDKKD-RKNLFELKLIAKKLGLLNLKSFFFTVGGTNGKGTTCAMLEKLLLDSGYQVGLYTSPHLINYSERIKVNGLYLSEKDHIFSFLIIDAEKG 111          
BLAST of EY679648 vs. ExPASy Swiss-Prot
Match: FOLC_BACSU (Folylpolyglutamate synthase OS=Bacillus subtilis GN=folC PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.666e-13
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = -3
Query:   43 GLERSQQVAARLGLGRPAPRVITVTGTNGKGSTCAFVAALLQAQGLKVGVYNSPHLLRYNERVQLNGVEATDEQ 264
            GL R +Q+ ARLG      R   V GTNGKGST AF+ ++LQ  G  VG + SP+++ +NER+ +NG+  +DE+
Sbjct:   23 GLGRMKQLMARLGHPEKKIRAFHVAGTNGKGSTVAFIRSMLQEAGYTVGTFTSPYIITFNERISVNGIPISDEE 96          
BLAST of EY679648 vs. ExPASy Swiss-Prot
Match: FOLC_CAEEL (Putative folylpolyglutamate synthase OS=Caenorhabditis elegans GN=F25B5.6 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.381e-11
Identity = 36/91 (39.56%), Postives = 53/91 (58.24%), Query Frame = -3
Query:   28 YLEQLHPSAIDMGLERSQQVAARLGLGRPAPRVITVTGTNGKGSTCAFVAALLQAQGLKVGVYNSPHLLRYNERVQLNGVEATDEQLCEAF 300
            YLE L+ SA D+                 A  +I V+GT GKGS CAFV ++L++QGL+ G Y+SPHL+   ER+Q++G   +++   E F
Sbjct:   74 YLESLNISAEDLN----------------ALNIIHVSGTKGKGSACAFVESILRSQGLRTGFYSSPHLVHVRERIQVDGQPVSEQMFAEEF 148          
The following BLAST results are available for this feature:
BLAST of EY679648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
FOLC_ECOLI1.536e-2653.77Bifunctional protein folC OS=Escherichia coli (str... [more]
FOLC_HAEIN3.203e-2451.89Folylpolyglutamate synthase OS=Haemophilus influen... [more]
FOLC_BUCBP1.033e-1448.86Bifunctional protein folC OS=Buchnera aphidicola s... [more]
FOLC_BUCAI3.005e-1440.95Bifunctional protein folC OS=Buchnera aphidicola s... [more]
FOLC_BUCAP2.544e-1336.04Bifunctional protein folC OS=Buchnera aphidicola s... [more]
FOLC_BACSU9.666e-1345.95Folylpolyglutamate synthase OS=Bacillus subtilis G... [more]
FOLC_CAEEL2.381e-1139.56Putative folylpolyglutamate synthase OS=Caenorhabd... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-E04-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679648 ID=EY679648; Name=EY679648; organism=Citrus sinensis; type=EST; length=860bp
CTCGCCACGCCCGGTATCGAGTGCGGCGAAGGCTTCGCAGAGCTGCTCAT
CAGTGGCTTCGACGCCATTGAGTTGCACCCGTTCGTTGTAGCGCAGCAGG
TGCGGCGAGTTGTACACGCCGACCTTCAGGCCCTGGGCTTGCAGCAAGGC
CGCGACAAAGGCGCAGGTAGAACCCTTGCCGTTGGTGCCGGTCACCGTGA
TCACGCGCGGCGCCGGCCTGCCCAACCCGAGGCGGGCCGCTACCTGTTGC
GAGCGCTCCAGGCCCATGTCGATGGCTGACGGATGCAACTGCTCAAGGTA
GGCGAGCCATTCGCCCAGGGTACGTTGGGTCATATGTTTGCAGGCACCGG
TGGCACGACGATTGGCTCAATTTTAGGCGCGACGTACACAGGTGTCGGCA
GGCCCATCATCTGGGGCCAGCAGGCTACCCAGGCGTGGGGCGCAGTTCGC
CGCGGGGAATGATCAGATCGATCGCGCCGTGTTCCAGCAAGAAACTCGCT
GCGCTGGAAACCTTTCCGGGCAATTTTTTCACAAACGGTTTGCTCCGATA
ACCCCCGGGGCCGGCAAAACCGATTAGGGGCTTTAGGTTCGCCGAAAAAA
AACGTCCACCCAAACTTCGCCAGGGTGGGCGGAAAAACACCGCCTTAAAA
CGGGGGCGGGTAAAGAACGGAAATAAAAAGAAAAAACCCACCTTCCCACC
CAAACCCCACCCATAAGCGGGAAAAGTGAGGGGCATTTTGGACATCAGGA
GAAAAATCGTCGTTCTCCGGGGACCCGCGCGTTGCCGCGGGAGAACGCAC
GAGAAATAAAAATAACCTTGAGGGCGGATACTGTGTTTTTTCCTGGGGGC
GGGAATATAA
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