EY675546

Overview
NameEY675546
Unique NameEY675546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length985
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675546 vs. ExPASy Swiss-Prot
Match: RBP9X_DROME (Ran-binding proteins 9/10 homolog OS=Drosophila melanogaster GN=RanBPM PE=1 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 2.349e-15
Identity = 24/71 (33.80%), Postives = 36/71 (50.70%), Query Frame = 2
Query:  167 VSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWESE 379
            +S + L V Y  V     D   V+   P P    +YYFE+ +   G  G + IG T++ F+M R PGW+ +
Sbjct:  433 LSQNNLRVTYKGVGKQHSDAASVRTAYPIPSSCGLYYFEVRIISKGRNGYMGIGLTAQQFRMNRLPGWDKQ 503          

HSP 2 Score: 51.2174 bits (121), Expect = 2.349e-15
Identity = 26/77 (33.77%), Postives = 38/77 (49.35%), Query Frame = 3
Query:  366 GGKANSCGYHGDDGLLYRGQRKGEAFGPTFTTNDTVWWVVLTMLHREIFFP*NGSLIGPVYKDIQGPFVPNLCGSTP 596
            G    S GYHGDDG  +     G+ +GPTFTT D +   V   ++   F+  NG  +G  ++D+     P +   TP
Sbjct:  499 GWDKQSYGYHGDDGNSFSSSGNGQTYGPTFTTGDVIGCCV-NFVNNTCFYTKNGVDLGIAFRDLPTKLYPTVGLQTP 574          
BLAST of EY675546 vs. ExPASy Swiss-Prot
Match: RANB9_XENLA (Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 PE=2 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 1.648e-12
Identity = 26/77 (33.77%), Postives = 38/77 (49.35%), Query Frame = 3
Query:  366 GGKANSCGYHGDDGLLYRGQRKGEAFGPTFTTNDTVWWVVLTMLHREIFFP*NGSLIGPVYKDIQGPFVPNLCGSTP 596
            G   +S GYHGDDG  +     G+ +GPTFTT D +   V  ++    F+  NG  +G  + D+     P +   TP
Sbjct:  101 GWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCV-NLIDNTCFYTKNGHSLGIAFTDLPPNLYPTVGLQTP 176          

HSP 2 Score: 43.8986 bits (102), Expect = 1.648e-12
Identity = 20/72 (27.78%), Postives = 34/72 (47.22%), Query Frame = 2
Query:  158 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWE 373
            +L +S   L V Y        D   V++  P P    ++YFE+ +   G  G + IG +++   + R PGW+
Sbjct:   32 YLGLSHGNLRVHYKGHGKTSKDAASVRSTHPIPAACGIFYFEVKIISKGRDGYMGIGLSTQGVNLNRLPGWD 103          
The following BLAST results are available for this feature:
BLAST of EY675546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RBP9X_DROME2.349e-1533.80Ran-binding proteins 9/10 homolog OS=Drosophila me... [more]
RANB9_XENLA1.648e-1233.77Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-012-A07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675546 ID=EY675546; Name=EY675546; organism=Citrus sinensis; type=EST; length=985bp
CAACAACACTAACAACCCTCTTAATGAAGATCTCGGCTTGCACTTCCTCG
CGCTGGCCCGTGCTTCTTCGAGCTCGATGGGCGGAAAGCGGGAGGAGGAG
GATTTTGAGGAAGAAGAGGTGCCGACGGAGCTGAACACGATCAACAGCTC
TGGAGGGTTCCTGGTGGTTTCGCCGGATAAGTTGTCGGTCAAGTACACTA
GCGTCAATCTGCACGGCCATGACGTCGGCGTCGTCCAAGCTAACAAGCCG
GCTCCTGTTAAGCGGCTTGTTTATTACTTTGAGATTTACGTGAAGGACGC
TGGTGCCAAGGGCCAGATTGCCATTGGATTTACCAGTGAGTCTTTCAAGA
TGCGGAGGCAACCAGGGTGGGAAAGCGAACAGTTGTGGATACCATGGGGA
TGATGGATTGCTTTATCGTGGACAAAGAAAGGGAGAGGCCTTTGGCCCTA
CGTTTACAACTAATGATACTGTTTGGTGGGTGGTATTAACTATGCTTCAC
AGGGAAATTTTTTTTCCCTAAAATGGTTCTTTAATAGGACCAGTGTACAA
GGACATTCAGGGTCCCTTTGTTCCCAACCTTTGTGGTTCCACGCCCAAAA
CAAGGAGGGGTTCTTTGTCCACTTTCGGCCAAAAAAAAATTTGCCTTTTG
AATTCTAAGGATTACCAACCCCCAAGAAAGGAATGAGCCCACAAATGGTA
AATTTGGAAAAGAATTTTTCCCCCCCCCCCTTGGGTCATTTTTGGGGGGT
TGGTTCCCCCCCTCCTTGACAGAAATATTGGAAATAAAGAAAAACACCAT
TAATTCTATTTTATTATGTGGGGGAGGGAAAAAATTAATTGGGTATCCCC
CCTGTTTTTTTTTTTGTGGCCCAAAAAAAAGAAGGGGTGTTTGTATTAGA
GAAAAAGAAAAAAGTGAGGTTTTGTTGCTTGGTTTAAAAAGACTGCCTCA
TAAAAAAGATACCCTCTCTTATTTAAAACAACGCG
back to top