EY675538

Overview
NameEY675538
Unique NameEY675538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1095
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675538 vs. ExPASy Swiss-Prot
Match: RFC3_SCHPO (Replication factor C subunit 3 OS=Schizosaccharomyces pombe GN=rfc3 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 1.475e-30
Identity = 57/93 (61.29%), Postives = 76/93 (81.72%), Query Frame = 2
Query:  212 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELSASDDKGIDVVRQQIQDFGYTQSL 490
            PWVEKYRP +L DV +H+DI+ T+++  S NR+PH+L YGPPGTGKTSTILA ARK+YG  Y N ++EL+ASDD+GID VR+QI++F  T+ +
Sbjct:   24 PWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGPNYRNQLMELNASDDRGIDAVREQIKNFASTRQI 116          
BLAST of EY675538 vs. ExPASy Swiss-Prot
Match: RFC5_DICDI (Probable replication factor C subunit 5 OS=Dictyostelium discoideum GN=rfc5 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.781e-29
Identity = 60/87 (68.97%), Postives = 70/87 (80.46%), Query Frame = 2
Query:  212 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELSASDDKGIDVVRQQIQDF 472
            PWVEKYRP++L D+ AH DI  TI +L   N LPHLL YGPPGTGKTSTI A+ARKLYG  Y  M+LEL+ASDD+GIDVVR+QI+ F
Sbjct:   25 PWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLYGDNYSRMVLELNASDDRGIDVVREQIKTF 111          
BLAST of EY675538 vs. ExPASy Swiss-Prot
Match: RFC3_YEAST (Replication factor C subunit 3 OS=Saccharomyces cerevisiae GN=RFC3 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.057e-28
Identity = 56/97 (57.73%), Postives = 75/97 (77.32%), Query Frame = 2
Query:  212 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELSASDDKGIDVVRQQIQDFGYTQSLLIWG 502
            PWVEKYRP++L +V    +++ T+ +   E +LPHLL YGPPGTGKTSTI+A+AR++YG  Y NM+LEL+ASDD+GIDVVR QI+DF  T+ +   G
Sbjct:   14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG 110          
BLAST of EY675538 vs. ExPASy Swiss-Prot
Match: RFC3_ARXAD (Replication factor C subunit 3 OS=Arxula adeninivorans GN=RFC3 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.355e-28
Identity = 57/97 (58.76%), Postives = 74/97 (76.29%), Query Frame = 2
Query:  212 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELSASDDKGIDVVRQQIQDFGYTQSLLIWG 502
            PWVEKYRP +L +VA H  ++ TI +   E +LPHLL +GPPGTGKT+TI+AVAR++YG  Y NMILEL+ASD++GIDVVR QI+ F  T+ +   G
Sbjct:   18 PWVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQIYGKNYRNMILELNASDERGIDVVRDQIKTFASTRQIFSSG 114          
BLAST of EY675538 vs. ExPASy Swiss-Prot
Match: RFC5_MOUSE (Replication factor C subunit 5 OS=Mus musculus GN=Rfc5 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 5.246e-28
Identity = 59/94 (62.77%), Postives = 78/94 (82.98%), Query Frame = 2
Query:  212 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-GAQYHNMILELSASDDKGIDVVRQQIQDFGYTQSL 490
            PWVEKYRPQ+LAD+ +H+DI+ TI +  SE+RLPHLLLYGPPGTGKTSTILA A++LY   ++ +M+LEL+ASDD+GID+VR  I  F  T+++
Sbjct:   20 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI 113          
BLAST of EY675538 vs. ExPASy Swiss-Prot
Match: RFC5_HUMAN (Replication factor C subunit 5 OS=Homo sapiens GN=RFC5 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 4.441e-27
Identity = 57/98 (58.16%), Postives = 79/98 (80.61%), Query Frame = 2
Query:  200 IKASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY-GAQYHNMILELSASDDKGIDVVRQQIQDFGYTQSL 490
            I+  PWVEKYRPQ+L D+ +H+DI+ TI +  +E+RLPHLLLYGPPGTGKTSTILA A++LY   ++ +M+LEL+ASDD+GID++R  I  F  T+++
Sbjct:   17 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTI 114          
BLAST of EY675538 vs. ExPASy Swiss-Prot
Match: RFC2_PHANO (Replication factor C subunit 2 OS=Phaeosphaeria nodorum GN=RFC2 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.281e-23
Identity = 62/158 (39.24%), Postives = 92/158 (58.23%), Query Frame = 2
Query:  143 NLKPKDNGKNVIVSGTPPDIKAS-----PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELSASDDKGIDVVRQQIQDFGYTQSLL--IWG*RAQSKRGLLGGGRMPWTKEAQFCPWVKVI 592
            NLK +        S   P  K       PWVEKYRP++L++V A  + +  + R    + LPH+L YGPPGTGKTSTILA+A++LYG +   + +LEL+ASD++GI +VRQ+++DF   Q  +   +    + K G  G  +M   ++   CP  K+I
Sbjct:    6 NLKARQQAAAQASSSKTPTSKQESNRLQPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDG--GEAKMVRYRDKYSCPPFKII 161          
BLAST of EY675538 vs. ExPASy Swiss-Prot
Match: RFC5_CAEEL (Probable replication factor C subunit 5 OS=Caenorhabditis elegans GN=F44B9.8 PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 5.081e-23
Identity = 51/94 (54.26%), Postives = 67/94 (71.28%), Query Frame = 2
Query:  212 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG-AQYHNMILELSASDDKGIDVVRQQIQDFGYTQSL 490
            PWVEKYRP  L ++ AH  IV T+ +      LPHLL YGPPGTGKT+T+LA AR++Y   +  +M+LEL+ASD++GIDVVR  I +F  T+ L
Sbjct:   30 PWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGL 123          
BLAST of EY675538 vs. ExPASy Swiss-Prot
Match: RFCS_SULTO (Replication factor C small subunit OS=Sulfolobus tokodaii GN=rfcS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 4.755e-21
Identity = 44/89 (49.44%), Postives = 61/89 (68.54%), Query Frame = 2
Query:  215 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELSASDDKGIDVVRQQIQDFGYT 481
            W EKYRP+SL D+   +DIV+ + R   +  +PHLL  GPPGTGKT+  LA+   LYG  Y    LEL+ASD++GIDV+R ++++F  T
Sbjct:    9 WAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYGDNYRQYFLELNASDERGIDVIRNKVKEFART 97          
BLAST of EY675538 vs. ExPASy Swiss-Prot
Match: RFCS_SULSO (Replication factor C small subunit OS=Sulfolobus solfataricus GN=rfcS PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.059e-20
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 2
Query:  215 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELSASDDKGIDVVRQQIQDFGYT 481
            W EKYRP++L D+   R+I+D + +   E  +PHLL  GPPGTGKT+  LA+   LYG  Y    LEL+ASD++GIDV+R ++++F  T
Sbjct:   10 WAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDNYTEYFLELNASDERGIDVIRNKVKEFART 98          
The following BLAST results are available for this feature:
BLAST of EY675538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RFC3_SCHPO1.475e-3061.29Replication factor C subunit 3 OS=Schizosaccharomy... [more]
RFC5_DICDI2.781e-2968.97Probable replication factor C subunit 5 OS=Dictyos... [more]
RFC3_YEAST1.057e-2857.73Replication factor C subunit 3 OS=Saccharomyces ce... [more]
RFC3_ARXAD2.355e-2858.76Replication factor C subunit 3 OS=Arxula adeninivo... [more]
RFC5_MOUSE5.246e-2862.77Replication factor C subunit 5 OS=Mus musculus GN=... [more]
RFC5_HUMAN4.441e-2758.16Replication factor C subunit 5 OS=Homo sapiens GN=... [more]
RFC2_PHANO2.281e-2339.24Replication factor C subunit 2 OS=Phaeosphaeria no... [more]
RFC5_CAEEL5.081e-2354.26Probable replication factor C subunit 5 OS=Caenorh... [more]
RFCS_SULTO4.755e-2149.44Replication factor C small subunit OS=Sulfolobus t... [more]
RFCS_SULSO1.059e-2048.31Replication factor C small subunit OS=Sulfolobus s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-011-H09-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675538 ID=EY675538; Name=EY675538; organism=Citrus sinensis; type=EST; length=1095bp
CTCAACTGTGAATCGCCCCTTAAAGGCGGGTGTGAGAGTGAGAGAGACAG
AGAGAGCCCAGCAAGAGAGAGCGAGGCCAGCAAACAAAATGGCGGAAGCG
GAAACGGTGTCGCTTATGGACTTCGACGAAGACGAGAACCAGAACTTGAA
ACCAAAAGACAACGGGAAAAACGTCATCGTTTCAGGCACGCCACCCGACA
TTAAAGCCTCTCCTTGGGTCGAAAAGTACCGACCTCAGTCCCTCGCTGAC
GTGGCCGCTCATCGCGACATTGTTGATACCATTGATAGGTTGACTAGCGA
GAACAGACTGCCCCATCTTCTGCTGTATGGTCCTCCCGGCACAGGCAAAA
CATCTACCATTCTTGCTGTTGCACGGAAGCTTTATGGAGCACAATATCAC
AATATGATTCTGGAGCTGAGTGCGTCTGATGATAAAGGAATTGACGTTGT
GCGGCAACAGATCCAAGATTTTGGCTACACTCAAAGCCTCCTCATTTGGG
GGTAAAGGGCTCAGTCAAAGCGGGGCTTGCTTGGAGGAGGGCGGATGCCC
TGGACAAAAGAAGCTCAGTTTTGCCCTTGGGTAAAAGTGATTGAAGAAAA
ACAACGAAAAAACCCTAGGTTTGCGCCTTATCTGGTAATCAAGGTCAACA
GAATTTTTTCCTGCCTCTGGCAATCCTAAATGTGACCCAAAATCCTAATT
TTGCTCCCCCTTGAACCCGGTTGTCAGGGACCTGAAGCTCCTTCAAATGT
GTGAATAAAGGGGCTGGAAGGGCGTTGGGATTATAAAAAAAGGGGGGGGT
TGGCACAGCATTTGGTGAGGGCTTTAGGAAAGGGGAGATATAAAATGAAA
AGGGCCTTGAAAATTTTTGTGAGCAATCAGAACAAACTTATGTGGGCTAC
TCACCCCACCTAATTAAAAAAAAAAAAGAGATTGGTAAAATCATTTGTGG
GCCAACAGGGAGAAAAACCGCATTCTAGACAACCATAGAGGAGAACATTG
GGGACATGAAAATAATTATAATATTTAAAGTTGAGTTCTTTAGTGATAGC
AAAAAGAACAATGGCGTGATATTTTTTGATTTGATGGGTGACGGC
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