EY657350

Overview
NameEY657350
Unique NameEY657350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length971
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY657350 vs. ExPASy Swiss-Prot
Match: 4CL3_ARATH (4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana GN=4CL3 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.116e-30
Identity = 76/156 (48.72%), Postives = 98/156 (62.82%), Query Frame = 2
Query:   95 MISIATKKPEL---------SLDISSPAPPAPSNEKIATHIFKSKLPDIPISNHLPLHTYCFQ--DRLSDDPCLIVGLTGKTYSYAETHLICKKTATGLSNLGIKKGDVIMILLRNCAEFLLLVQGSFHESGHSPQRAIPFNTSAEILEQFQNPRA 529
            MI+ A  +P++         S D+   +PP P        IF+SKLPDI I NHLPLHTYCF+    +SD PCLIVG TGK+Y+Y ETHLIC++ A+GL  LGI+KGDVIMILL+N AEF+    G+    G     A PF TS E+ +Q ++  A
Sbjct:    1 MITAALHEPQIHKPTDTSVVSDDVLPHSPPTP-------RIFRSKLPDIDIPNHLPLHTYCFEKLSSVSDKPCLIVGSTGKSYTYGETHLICRRVASGLYKLGIRKGDVIMILLQNSAEFVFSFMGA-SMIGAVSTTANPFYTSQELYKQLKSSGA 148          
BLAST of EY657350 vs. ExPASy Swiss-Prot
Match: 4CL2_SOYBN (4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 2.586e-28
Identity = 69/128 (53.91%), Postives = 86/128 (67.19%), Query Frame = 2
Query:  182 THIFKSKLPDIPISNHLPLHTYCFQD--RLSDDPCLIVGLTGKTYSYAETHLICKKTATGLSNLGIKKGDVIMILLRNCAEFLLLVQGSFHESGHSPQRAIPFNTSAEILEQFQNPRAPN*IIQMAQV 559
            +H+FKSKLPDIPISNHLPLH+YCFQ+  + +  PCLIVG   KT++YA+THLI  K A GLSNLGI KGDV+MILL+N A+F+     +    G     A PF T+ EI +QF   +A   I Q   V
Sbjct:   24 SHVFKSKLPDIPISNHLPLHSYCFQNLSQFAHRPCLIVGPASKTFTYADTHLISSKIAAGLSNLGILKGDVVMILLQNSADFVFSFL-AISMIGAVATTANPFYTAPEIFKQFTVSKAKLIITQAMYV 150          
BLAST of EY657350 vs. ExPASy Swiss-Prot
Match: 4CL2_ORYSJ (Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa subsp. japonica GN=4CL2 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 7.288e-23
Identity = 63/144 (43.75%), Postives = 84/144 (58.33%), Query Frame = 2
Query:   95 MISIATKKPELSLDISSPAPPAPSNEKIATHIFKSKLPDIPISNHLPLHTYCFQD--RLSDDPCLIVGLTGKTYSYAETHLICKKTATGLSNLGIKKGDVIMILLRNCAEF-LLLVQGSFHESGHSPQRAIPFNTSAEILEQFQ 517
            MI++A   PE    +++    AP     A  +F+SKLPDI I +HLPLH YCF     L D PCLI   TG+TY++AET L+C++ A  L  LG+  GD +M+LL+NC EF +     SF   G     A PF T  EI +QF+
Sbjct:    1 MITVAA--PEAQPQVAAAVDEAPPE---AVTVFRSKLPDIDIPSHLPLHEYCFARAAELPDAPCLIAAATGRTYTFAETRLLCRRAAAALHRLGVGHGDRVMVLLQNCVEFAVAFFAASF--LGAVTTAANPFCTPQEIHKQFK 137          
BLAST of EY657350 vs. ExPASy Swiss-Prot
Match: 4CL1_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.519e-23
Identity = 57/126 (45.24%), Postives = 82/126 (65.08%), Query Frame = 2
Query:  188 IFKSKLPDIPISNHLPLHTYCFQD--RLSDDPCLIVGLTGKTYSYAETHLICKKTATGLSNLGIKKGDVIMILLRNCAEFLLLVQGSFHESGHSPQRAIPFNTSAEILEQFQNPRAPN*IIQMAQV 559
            IF+SKLPDI I  HLPLHTYCF++  ++ D  CLI G TG+T++Y++  L+ +K A+GL+ LGI++GD IM+LL N  E+     G+ +    S   A PF TSAE+++Q +  +A   I Q   V
Sbjct:   12 IFRSKLPDIYIPKHLPLHTYCFENISKVGDKSCLINGATGETFTYSQVELLSRKVASGLNKLGIQQGDTIMLLLPNSPEYFFAFLGASYRGAISTM-ANPFFTSAEVIKQLKASQAKLIITQACYV 136          
BLAST of EY657350 vs. ExPASy Swiss-Prot
Match: 4CL2_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.121e-22
Identity = 57/126 (45.24%), Postives = 81/126 (64.29%), Query Frame = 2
Query:  188 IFKSKLPDIPISNHLPLHTYCFQD--RLSDDPCLIVGLTGKTYSYAETHLICKKTATGLSNLGIKKGDVIMILLRNCAEFLLLVQGSFHESGHSPQRAIPFNTSAEILEQFQNPRAPN*IIQMAQV 559
            IF+SKLPDI I  HLPLHTYCF++  ++ D  CLI G TG+T++Y++  L+ +K A+GL+ LGI++GD IM+LL N  E+     G+ +    S   A PF TSAE+++Q +   A   I Q   V
Sbjct:   12 IFRSKLPDIYIPKHLPLHTYCFENISKVGDKSCLINGATGETFTYSQVELLSRKVASGLNKLGIQQGDTIMLLLPNSPEYFFAFLGASYRGAISTM-ANPFFTSAEVIKQLKASLAKLIITQACYV 136          
BLAST of EY657350 vs. ExPASy Swiss-Prot
Match: 4CL_PINTA (4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.374e-21
Identity = 53/115 (46.09%), Postives = 73/115 (63.48%), Query Frame = 2
Query:  173 KIATHIFKSKLPDIPISNHLPLHTYCFQD--RLSDDPCLIVGLTGKTYSYAETHLICKKTATGLSNLGIKKGDVIMILLRNCAEFLLLVQGSFHESGHSPQRAIPFNTSAEILEQ 511
            K   H+++SKLPDI IS+HLPLH+YCF+     +D PCLI G T +TY ++E  LI +K A GL+ LG+++G V+M+LL NC EF  +  G+    G     A PF    EI +Q
Sbjct:    6 KKVEHLYRSKLPDIEISDHLPLHSYCFERVAEFADRPCLIDGATDRTYCFSEVELISRKVAAGLAKLGLQQGQVVMLLLPNCIEFAFVFMGA-SVRGAIVTTANPFYKPGEIAKQ 119          
BLAST of EY657350 vs. ExPASy Swiss-Prot
Match: 4CL_VANPL (4-coumarate--CoA ligase OS=Vanilla planifolia GN=4CL PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.422e-20
Identity = 53/110 (48.18%), Postives = 72/110 (65.45%), Query Frame = 2
Query:  188 IFKSKLPDIPISNHLPLHTYCFQD--RLSDDPCLIVGLTGKTYSYAETHLICKKTATGLSNLGIKKGDVIMILLRNCAEFLLLVQGSFHESGHSPQRAIPFNTSAEILEQ 511
            IF+SKLPDI I  +LPLH+YCF++  + S  PCLI G T + ++YA+  LI ++  +GLS LGIK+GD IMILL N  EF+    G+    G     A PF TS E+++Q
Sbjct:   15 IFRSKLPDIYIPKNLPLHSYCFENISKFSSRPCLINGATDEIFTYADVELISRRVGSGLSKLGIKQGDTIMILLPNSPEFVFAFLGASF-IGSISTMANPFFTSTEVIKQ 123          
BLAST of EY657350 vs. ExPASy Swiss-Prot
Match: 4CL1_TOBAC (4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.775e-20
Identity = 53/110 (48.18%), Postives = 69/110 (62.73%), Query Frame = 2
Query:  188 IFKSKLPDIPISNHLPLHTYCFQD--RLSDDPCLIVGLTGKTYSYAETHLICKKTATGLSNLGIKKGDVIMILLRNCAEFLLLVQGSFHESGHSPQRAIPFNTSAEILEQ 511
            IF+SKLPDI I  HLPLH+YCF++    S  PCLI G   + Y+YAE  L C+K A GL+ LGI++ D IMILL N  EF+    G+ +  G     A P  T AE+++Q
Sbjct:   16 IFRSKLPDIYIPKHLPLHSYCFENISEFSSRPCLINGANDQIYTYAEVELTCRKVAVGLNKLGIQQKDTIMILLPNSPEFVFAFMGASY-LGAISTMANPLFTPAEVVKQ 124          
BLAST of EY657350 vs. ExPASy Swiss-Prot
Match: 4CL2_SOLTU (4-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=4CL2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.194e-19
Identity = 52/110 (47.27%), Postives = 69/110 (62.73%), Query Frame = 2
Query:  188 IFKSKLPDIPISNHLPLHTYCFQD--RLSDDPCLIVGLTGKTYSYAETHLICKKTATGLSNLGIKKGDVIMILLRNCAEFLLLVQGSFHESGHSPQRAIPFNTSAEILEQ 511
            IF+SKLPDI I  HLPLH+YCF++    +  PCLI G   + Y+YAE  L  +K A GL+ LGI++ D IMILL NC EF+    G+ +  G     A P  T AE+++Q
Sbjct:   14 IFRSKLPDIYIPKHLPLHSYCFENLSEFNSRPCLIDGANDRIYTYAEVELTSRKVAVGLNKLGIQQKDTIMILLPNCPEFVFAFIGASY-LGAISTMANPLFTPAEVVKQ 122          
BLAST of EY657350 vs. ExPASy Swiss-Prot
Match: 4CL1_SOLTU (4-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=4CL1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.194e-19
Identity = 52/110 (47.27%), Postives = 69/110 (62.73%), Query Frame = 2
Query:  188 IFKSKLPDIPISNHLPLHTYCFQD--RLSDDPCLIVGLTGKTYSYAETHLICKKTATGLSNLGIKKGDVIMILLRNCAEFLLLVQGSFHESGHSPQRAIPFNTSAEILEQ 511
            IF+SKLPDI I  HLPLH+YCF++    +  PCLI G   + Y+YAE  L  +K A GL+ LGI++ D IMILL NC EF+    G+ +  G     A P  T AE+++Q
Sbjct:   14 IFRSKLPDIYIPKHLPLHSYCFENLSEFNSRPCLIDGANDRIYTYAEVELTSRKVAVGLNKLGIQQKDTIMILLPNCPEFVFAFIGASY-LGAISTMANPLFTPAEVVKQ 122          
The following BLAST results are available for this feature:
BLAST of EY657350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
4CL3_ARATH2.116e-3048.724-coumarate--CoA ligase 3 OS=Arabidopsis thaliana ... [more]
4CL2_SOYBN2.586e-2853.914-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2[more]
4CL2_ORYSJ7.288e-2343.75Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa... [more]
4CL1_PETCR9.519e-2345.244-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL2_PETCR2.121e-2245.244-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL_PINTA1.374e-2146.094-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2... [more]
4CL_VANPL4.422e-2048.184-coumarate--CoA ligase OS=Vanilla planifolia GN=4... [more]
4CL1_TOBAC5.775e-2048.184-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=... [more]
4CL2_SOLTU2.194e-1947.274-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=... [more]
4CL1_SOLTU2.194e-1947.274-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-092-A04-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY657350 ID=EY657350; Name=EY657350; organism=Citrus sinensis; type=EST; length=971bp
CCACGCGTCCGCTCTAACTTAATTTTCCCTAAACCATAGCCAGCTCCCCC
TATTCATCTAAAAAAATTTCGACAAAACAAAAAAGGCACTCACGATGATA
TCAATAGCCACTAAAAAACCAGAGCTGTCTCTTGATATCTCTTCACCAGC
ACCACCAGCGCCGTCCAATGAAAAGATAGCCACCCATATTTTCAAATCAA
AGCTTCCCGATATACCCATCTCCAATCATCTCCCTCTCCACACATATTGT
TTCCAGGATCGTTTATCTGACGACCCATGCTTAATCGTTGGCTTAACTGG
CAAAACTTACTCTTATGCCGAAACGCACCTCATCTGTAAAAAAACCGCAA
CCGGTTTATCGAACCTCGGCATCAAAAAGGGCGACGTGATCATGATCCTC
CTCCGAAACTGTGCCGAATTCCTCCTTCTCGTTCAGGGGAGCTTCCATGA
ATCGGGGCATTCACCACAAAGGGCAATCCCCTTCAACACTTCAGCGGAAA
TCTTGGAACAATTCCAAAACCCCCGGGCGCCAAATTGAATTATCCAAATG
GCCCAAGTAACGTCCACAGGGTTGCCCAAAAAAAGGGACAAAAATTTTCC
CAGGGGATCACAAATTGGAACCCCCCCCCCGGGAAAAATTGCCGGGCTTT
TTTCCAGTGGTTAACCGGAAACACAAAAGAAAGGATATAAATCCCCAAAA
ATTTGGGCCATCCAGAGCCGAAAAAAAATCCGGGGGGGGGTTTCCCCCTT
TTCCATTAGAGGGAACCCGAGGGGGGAATTGGGCCAAAAGAAGGGGAGGA
GGAGAGAGGGACAACGAAAAGACCTTATAGAAAACCAAGCACGGAGGGAG
GGCGCAAAATAGGGGAGAAGAAGAAAAAAAAAGACCCCCAGAAAAATTAT
TTCTAGCAGGGACAAAAAACAGAGAAAGAGGACACGTGTGGGAGGGGCGG
AGGTGGGAGTGGTGATTTTTG
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