EY675374

Overview
NameEY675374
Unique NameEY675374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1085
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2122 contig Csv1_Contig2122:503..1587. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY675374 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 2.152e-66
Identity = 120/127 (94.49%), Postives = 126/127 (99.21%), Query Frame = 2
Query:    2 FGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRQA 382
            FGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKIT+FIKFDVGNVVMVTGGRNRGRVG+IKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKGTKPWVSLPKGKGIKL+I+EEA+KRQA
Sbjct:  127 FGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLTILEEAKKRQA 253          
BLAST of EY675374 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 2.630e-64
Identity = 118/127 (92.91%), Postives = 123/127 (96.85%), Query Frame = 2
Query:    2 FGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRQA 382
            FGQKGIPY+NTYDGRTIRYPDPLIKANDTIKLDLE+NKI +FIKFDVGNVVMVTGGRNRGRVG+IKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKGTKPWVSLPK KGIKLSIIEEARKR A
Sbjct:  131 FGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPKRKGIKLSIIEEARKRLA 257          
BLAST of EY675374 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 5.860e-64
Identity = 117/127 (92.13%), Postives = 122/127 (96.06%), Query Frame = 2
Query:    2 FGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRQA 382
            FGQKGIPY+NTYDGRTIRYPDPLIK NDTIKLDLE NKI EFIKFDVGNVVMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKGTKPWVSLPKGKGIKL+IIEEARKR A
Sbjct:  131 FGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLA 257          
BLAST of EY675374 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 244.588 bits (623), Expect = 7.654e-64
Identity = 117/127 (92.13%), Postives = 122/127 (96.06%), Query Frame = 2
Query:    2 FGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRQA 382
            FGQKGIPY+NTYDGRTIRYPDPLIK NDTIKLDLE NKI EFIKFDVGNVVMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKGTKPWVSLPKGKGIKL+IIEEARKR A
Sbjct:  131 FGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLA 257          
BLAST of EY675374 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 9.996e-64
Identity = 115/127 (90.55%), Postives = 124/127 (97.64%), Query Frame = 2
Query:    2 FGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRQA 382
            FGQKGIPY+NTYDGRTIRYPDPLIKANDTIKLDLE+NKI +FIKFDVGNVVMVTGGRNRGRVG+IKNREKHKGSFET+HIQD+ GHEFATRLGNVFT+GKGTKPWVSLPKGKGIKL+IIE+ARKR A
Sbjct:  131 FGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLTIIEDARKRLA 257          
BLAST of EY675374 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.305e-63
Identity = 116/125 (92.80%), Postives = 121/125 (96.80%), Query Frame = 2
Query:    2 FGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 376
            FGQKGIPY+NTYDGRTIRYPDPLIK NDTIKLDLE NKI EFIKFDVGNVVMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKGTKPWVSLPKGKGIKL+IIEEARKR
Sbjct:  131 FGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255          
BLAST of EY675374 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3)

HSP 1 Score: 243.432 bits (620), Expect = 1.705e-63
Identity = 114/127 (89.76%), Postives = 122/127 (96.06%), Query Frame = 2
Query:    2 FGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRQA 382
            FGQKGIPY+NTYDGRTIRYPDP+IKANDTIK+DLETNKI +FIKFDVGNVVMVTGGRN GRVG+IKNREKHKGSFETIH++DALGH+FATRLGNVFTIGKG KPWVSLPKGKGIKLSIIEE RKR A
Sbjct:  131 FGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKRDA 257          
BLAST of EY675374 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 3.798e-63
Identity = 113/127 (88.98%), Postives = 122/127 (96.06%), Query Frame = 2
Query:    2 FGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRQA 382
            FGQKGIPY+NTYDGRTIRYPDPLIKANDTIK+DLETNKI +FIKFDVGNVVMVTGGRN GRVG+IKNREKHKGSFETIH++D+LGH+FATR+GNVFTIGKG KPWVSLPKGKGIKLSIIEE RKR A
Sbjct:  131 FGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDSLGHQFATRMGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKRDA 257          
BLAST of EY675374 vs. ExPASy Swiss-Prot
Match: RS4X_DANRE (40S ribosomal protein S4, X isoform OS=Danio rerio GN=rps4x PE=2 SV=3)

HSP 1 Score: 189.889 bits (481), Expect = 2.237e-47
Identity = 85/132 (64.39%), Postives = 108/132 (81.82%), Query Frame = 2
Query:    5 GQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRQALGDFSS 400
            G KGIP++ T+D RTIRYPDPLIK NDTI++DL+T KIT+FIKF+ GN+ MVTGG N GR+G+I NREKH GSF+ +H++D++G+ FATRL N+F IGKG KPWVSLP+GKG++L+I EE  KR A    SS
Sbjct:  132 GTKGIPHLVTHDARTIRYPDPLIKVNDTIRIDLDTGKITDFIKFETGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDSIGNSFATRLSNIFVIGKGNKPWVSLPRGKGVRLTIAEERDKRLAAKQSSS 263          
BLAST of EY675374 vs. ExPASy Swiss-Prot
Match: RS4_XENTR (40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3)

HSP 1 Score: 189.119 bits (479), Expect = 3.816e-47
Identity = 85/126 (67.46%), Postives = 105/126 (83.33%), Query Frame = 2
Query:    5 GQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRQA 382
            G KGIP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L+I EE  KR A
Sbjct:  132 GTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLA 257          
The following BLAST results are available for this feature:
BLAST of EY675374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
RS4_PRUAR2.152e-6694.4940S ribosomal protein S4 OS=Prunus armeniaca GN=RP... [more]
RS4_GOSHI2.630e-6492.9140S ribosomal protein S4 OS=Gossypium hirsutum GN=... [more]
RS43_ARATH5.860e-6492.1340S ribosomal protein S4-3 OS=Arabidopsis thaliana... [more]
RS42_ARATH7.654e-6492.1340S ribosomal protein S4-2 OS=Arabidopsis thaliana... [more]
RS4_SOLTU9.996e-6490.5540S ribosomal protein S4 OS=Solanum tuberosum GN=R... [more]
RS41_ARATH1.305e-6392.8040S ribosomal protein S4-1 OS=Arabidopsis thaliana... [more]
RS4_ORYSJ1.705e-6389.7640S ribosomal protein S4 OS=Oryza sativa subsp. ja... [more]
RS4_MAIZE3.798e-6388.9840S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 ... [more]
RS4X_DANRE2.237e-4764.3940S ribosomal protein S4, X isoform OS=Danio rerio... [more]
RS4_XENTR3.816e-4767.4640S ribosomal protein S4 OS=Xenopus tropicalis GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-009-G02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675374 ID=EY675374; Name=EY675374; organism=Citrus sinensis; type=EST; length=1085bp
ATTTGGGCAGAAGGGAATCCCTTACATCAACACTTATGATGGGAGGACTA
TTCGCTACCCAGACCCACTCATCAAGGCCAATGATACCATCAAGCTGGAC
CTGGAGACTAACAAGATCACCGAGTTCATCAAGTTTGATGTTGGAAATGT
TGTGATGGTGACTGGAGGGAGAAACAGAGGACGTGTTGGAATCATTAAGA
ACAGAGAAAAGCATAAGGGTAGCTTTGAAACTATCCACATCCAGGATGCT
CTTGGTCATGAGTTTGCAACTCGTCTTGGAAATGTGTTCACCATTGGCAA
GGGTACAAAGCCATGGGTTTCTCTTCCCAAGGGCAAGGGTATTAAACTAT
CCATCATTGAGGAGGCAAGGAAGAGACAAGCCCTGGGCGACTTCAGCAGC
CGCCCAATGATGATAAACTTCATGGTCTTTGCGATATGGTTTTTAGAAAG
TTTACTAAATGAAAGTTTTGCATTTTGACACTTTTTGGTGATTGCTTGTT
CGAATTTTCTTGGTGGTGAAACCAAGTTATCATAAAGGTTTATGAAGTCA
AATTACTGGGTTTCAATTTTTAGTTTTTTGAACAAACAGGGTGGAACCCT
TTTTTTTTTATCACCGGCTATAATTATTGGGCAAATGAATTTTTTGGGCC
CCAAAAAAAAAAAAAAAAAAAAAGGGGGGGCCCCCCCCCCAAAAAGGAAC
CCAAGCCTTTAAGTTAACCCGGGGGGTTGGGCAACAGTTCAAAACCCCTC
TTTTTTTGGGGGGCCCCCCCCTAATTTTTCATTTTTCCCGTGGGCCCCTT
CTTTTTTTAACAAAACTTCCGTGGCGGGGGGGGAAAAAACCCCCCTTGGC
GTTTTTTCCCCCCACCAATATTAAACCCCCCCTTGTGTCCTGCCAACACC
TCCCCCCCTTTTTTCCCCCCCCGGGGCGGGGGGTGAAAAAAAAAATACAA
GAAAAAAAGACGCCCCCCCCCCCCCCCAATATTTCGCCCCCTCCCTCTCC
ACCCCTAAAAAAATTTTGTTACCCCACCACCCCCCCCTGGATAGGGAGGG
GGGGGGGAGAAGAGAGGGGGAGACGAGGAAGGCAC
back to top