EY675364

Overview
NameEY675364
Unique NameEY675364
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1007
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675364 vs. ExPASy Swiss-Prot
Match: EXOS4_MOUSE (Exosome complex exonuclease RRP41 OS=Mus musculus GN=Exosc4 PE=2 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 3.117e-40
Identity = 78/123 (63.41%), Postives = 101/123 (82.11%), Query Frame = 2
Query:    2 QALVRCEYSMASFSTGDRMTKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 370
            +ALV C+YS A+FSTG+R  +P GDR+S E+ L +RQT EA ILT L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP + + +LP
Sbjct:   69 RALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLP 191          
BLAST of EY675364 vs. ExPASy Swiss-Prot
Match: EXOS4_HUMAN (Exosome complex exonuclease RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 5.317e-40
Identity = 78/123 (63.41%), Postives = 101/123 (82.11%), Query Frame = 2
Query:    2 QALVRCEYSMASFSTGDRMTKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 370
            +ALV C+YS A+FSTG+R  +P GDR+S E+ L +RQT EA ILT L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP + + +LP
Sbjct:   69 RALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLP 191          
BLAST of EY675364 vs. ExPASy Swiss-Prot
Match: EXOS4_BOVIN (Exosome complex exonuclease RRP41 OS=Bos taurus GN=EXOSC4 PE=2 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 5.317e-40
Identity = 78/123 (63.41%), Postives = 101/123 (82.11%), Query Frame = 2
Query:    2 QALVRCEYSMASFSTGDRMTKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 370
            +ALV C+YS A+FSTG+R  +P GDR+S E+ L +RQT EA ILT L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP + + +LP
Sbjct:   69 RALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLP 191          
BLAST of EY675364 vs. ExPASy Swiss-Prot
Match: ECX1_PYRKO (Probable exosome complex exonuclease 1 OS=Pyrococcus kodakaraensis GN=TK1634 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.593e-32
Identity = 65/123 (52.85%), Postives = 88/123 (71.54%), Query Frame = 2
Query:    2 QALVRCEYSMASFSTGDRMTKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 370
            +A++R  Y+MA FS  +R  KP  DRRS EIS VIR  +E  +L H+ PR+ ID+F+++LQAD GTR A I AA+LAL DAGIPM+D+V +C+AG ++   +LDLN  ED+ G  DV V I+P
Sbjct:   72 RAILRVRYNMAPFSVEERK-KPGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVFIEILQADAGTRVAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEADVPVAIMP 193          

HSP 2 Score: 34.2686 bits (77), Expect = 1.593e-32
Identity = 17/41 (41.46%), Postives = 25/41 (60.98%), Query Frame = 3
Query:  384 VTLLQMDAKLPTNTFENVMQLAIEGCKAVANYIRRSITREY 506
            +TLLQMD  L  + F   ++LAI+G KAV    R ++  +Y
Sbjct:  198 ITLLQMDGYLTKDEFLEAVRLAIKGAKAVYQKQREALKEKY 238          
BLAST of EY675364 vs. ExPASy Swiss-Prot
Match: ECX1_THEON (Probable exosome complex exonuclease 1 OS=Thermococcus onnurineus (strain NA1) GN=TON_0030 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.968e-32
Identity = 66/123 (53.66%), Postives = 86/123 (69.92%), Query Frame = 2
Query:    2 QALVRCEYSMASFSTGDRMTKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 370
            +A++R  Y+MA FS  +R  KP  DRRS EIS VIR  +E  ++  + PR+ IDIF++VLQAD GTR A I AA+LAL DAGIPMRD+V +C+AG +    +LDLN  ED+ G  DV V I+P
Sbjct:   72 RAILRVRYNMAPFSVEERK-KPGPDRRSVEISKVIRGALEPALILEMFPRTAIDIFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMP 193          

HSP 2 Score: 34.6538 bits (78), Expect = 5.968e-32
Identity = 18/49 (36.73%), Postives = 27/49 (55.10%), Query Frame = 3
Query:  384 VTLLQMDAKLPTNTFENVMQLAIEGCKAVANYIRRSITREYQAVGMPPG 530
            +TLLQMD  L  + F   ++LAI+G KAV    R ++  +Y  +    G
Sbjct:  198 ITLLQMDGYLTRDEFIEAVRLAIKGAKAVYQKQREALKEKYLKIAEEVG 246          
BLAST of EY675364 vs. ExPASy Swiss-Prot
Match: ECX1_PYRFU (Probable exosome complex exonuclease 1 OS=Pyrococcus furiosus GN=PF1568 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 7.772e-32
Identity = 66/123 (53.66%), Postives = 86/123 (69.92%), Query Frame = 2
Query:    2 QALVRCEYSMASFSTGDRMTKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 370
            +A++R  Y+MA FS  +R  KP  DRRS EIS VIR  +E  ++  + PR+ ID+F++VLQAD GTR A I AA+LAL DAGIPMRD+V +CSAG +    +LDLN  ED+ G  DV V I+P
Sbjct:   72 RAILRVRYNMAPFSVEERK-KPGPDRRSIEISKVIRGALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACSAGKIEGEIVLDLNKEEDNYGEADVPVAIMP 193          

HSP 2 Score: 33.8834 bits (76), Expect = 7.772e-32
Identity = 17/41 (41.46%), Postives = 24/41 (58.54%), Query Frame = 3
Query:  384 VTLLQMDAKLPTNTFENVMQLAIEGCKAVANYIRRSITREY 506
            +TLLQMD  L    F   ++LAI+G KAV    R ++  +Y
Sbjct:  198 ITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKY 238          
BLAST of EY675364 vs. ExPASy Swiss-Prot
Match: ECX1_PYRHO (Probable exosome complex exonuclease 1 OS=Pyrococcus horikoshii GN=PH1549 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.911e-31
Identity = 64/123 (52.03%), Postives = 86/123 (69.92%), Query Frame = 2
Query:    2 QALVRCEYSMASFSTGDRMTKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 370
            +A++R  Y+MA FS  +R  KP  DRRS EIS VI+  +E  ++  + PR+ ID+F++VLQAD GTR A I AA+LAL DAGIPMRD+V +C+AG +    +LDLN  ED+ G  DV V I+P
Sbjct:   72 RAILRVRYNMAPFSVEERK-KPGPDRRSIEISKVIKGALEPALILEMFPRTSIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMP 193          

HSP 2 Score: 33.8834 bits (76), Expect = 2.911e-31
Identity = 17/41 (41.46%), Postives = 24/41 (58.54%), Query Frame = 3
Query:  384 VTLLQMDAKLPTNTFENVMQLAIEGCKAVANYIRRSITREY 506
            +TLLQMD  L    F   ++LAI+G KAV    R ++  +Y
Sbjct:  198 ITLLQMDGYLTKEEFIEAVRLAIKGAKAVYQKQREALKEKY 238          
BLAST of EY675364 vs. ExPASy Swiss-Prot
Match: ECX1_PYRAB (Probable exosome complex exonuclease 1 OS=Pyrococcus abyssi GN=PYRAB06100 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.911e-31
Identity = 64/123 (52.03%), Postives = 86/123 (69.92%), Query Frame = 2
Query:    2 QALVRCEYSMASFSTGDRMTKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 370
            +A++R  Y+MA FS  +R  KP  DRRS EIS VI+  +E  ++  + PR+ ID+F++VLQAD GTR A I AA+LAL DAGIPMRD+V +C+AG +    +LDLN  ED+ G  DV V I+P
Sbjct:   72 RAILRVRYNMAPFSVEERK-KPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMP 193          

HSP 2 Score: 34.2686 bits (77), Expect = 2.911e-31
Identity = 17/41 (41.46%), Postives = 25/41 (60.98%), Query Frame = 3
Query:  384 VTLLQMDAKLPTNTFENVMQLAIEGCKAVANYIRRSITREY 506
            +TLLQMD  L  + F   ++LAI+G KAV    R ++  +Y
Sbjct:  198 ITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKY 238          
BLAST of EY675364 vs. ExPASy Swiss-Prot
Match: ECX1_THEGJ (Probable exosome complex exonuclease 1 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_2036 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 4.936e-31
Identity = 63/122 (51.64%), Postives = 86/122 (70.49%), Query Frame = 2
Query:    5 ALVRCEYSMASFSTGDRMTKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 370
            A++R  Y+MA FS  +R  KP  DRRS EIS VIR  +E  ++  + PR+ +D+F++VLQAD GTR A I AA+LAL DAG+PMRD+V +C+AG ++   +LDLN  ED+ G  DV V I+P
Sbjct:   73 AVLRVRYNMAPFSVEERK-KPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGKIDGEIVLDLNKDEDNYGEADVPVAIMP 193          

HSP 2 Score: 33.8834 bits (76), Expect = 4.936e-31
Identity = 17/41 (41.46%), Postives = 24/41 (58.54%), Query Frame = 3
Query:  384 VTLLQMDAKLPTNTFENVMQLAIEGCKAVANYIRRSITREY 506
            +TLLQMD  L    F   ++LAI+G KAV    R ++  +Y
Sbjct:  198 ITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKY 238          
BLAST of EY675364 vs. ExPASy Swiss-Prot
Match: ECX1_METTH (Probable exosome complex exonuclease 1 OS=Methanobacterium thermoautotrophicum GN=MTH_683 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.377e-31
Identity = 64/135 (47.41%), Postives = 90/135 (66.67%), Query Frame = 2
Query:    2 QALVRCEYSMASFSTGDRMTKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP-TLDKSYSSSDG 403
            +A++RC Y+MA FS  +R  +P  DRRS EIS +  + +   ++    PRS ID+F++VL+A+GGTR A I AA++AL DAGIPMRD+V +C+AG +    +LDL+  ED  G  DV V ILP T + +   SDG
Sbjct:   72 RAVIRCRYNMAPFSVEERK-RPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGGTRCAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLDLSEEEDKEGQADVPVAILPRTREITLLQSDG 205          

HSP 2 Score: 35.039 bits (79), Expect = 8.377e-31
Identity = 14/42 (33.33%), Postives = 23/42 (54.76%), Query Frame = 3
Query:  381 KVTLLQMDAKLPTNTFENVMQLAIEGCKAVANYIRRSITREY 506
            ++TLLQ D  L    FE  + LA+EGC  +    + ++ + Y
Sbjct:  197 EITLLQSDGNLTPEEFERALDLAVEGCLRIHEVQKEALRKRY 238          
The following BLAST results are available for this feature:
BLAST of EY675364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
EXOS4_MOUSE3.117e-4063.41Exosome complex exonuclease RRP41 OS=Mus musculus ... [more]
EXOS4_HUMAN5.317e-4063.41Exosome complex exonuclease RRP41 OS=Homo sapiens ... [more]
EXOS4_BOVIN5.317e-4063.41Exosome complex exonuclease RRP41 OS=Bos taurus GN... [more]
ECX1_PYRKO1.593e-3252.85Probable exosome complex exonuclease 1 OS=Pyrococc... [more]
ECX1_THEON5.968e-3253.66Probable exosome complex exonuclease 1 OS=Thermoco... [more]
ECX1_PYRFU7.772e-3253.66Probable exosome complex exonuclease 1 OS=Pyrococc... [more]
ECX1_PYRHO2.911e-3152.03Probable exosome complex exonuclease 1 OS=Pyrococc... [more]
ECX1_PYRAB2.911e-3152.03Probable exosome complex exonuclease 1 OS=Pyrococc... [more]
ECX1_THEGJ4.936e-3151.64Probable exosome complex exonuclease 1 OS=Thermoco... [more]
ECX1_METTH8.377e-3147.41Probable exosome complex exonuclease 1 OS=Methanob... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-009-F02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675364 ID=EY675364; Name=EY675364; organism=Citrus sinensis; type=EST; length=1007bp
CCAAGCACTGGTACGCTGTGAGTACAGCATGGCTAGTTTTAGTACGGGGG
ATCGCATGACAAAACCCAAGGGTGACAGGCGATCGACAGAAATATCTTTG
GTTATTCGCCAGACTATGGAAGCGTGCATTTTGACCCACTTAATGCCTCG
TTCCCAGATAGATATTTTTGTACAAGTTCTCCAAGCAGATGGAGGGACAA
GATCCGCATGTATTAATGCCGCAACATTAGCCCTTCAAGATGCTGGTATT
CCAATGCGCGATATTGTTACTTCATGTAGTGCTGGATACCTCAATAGCAC
TCCTCTTCTTGATTTGAATTATGTTGAAGATAGTGCTGGAGGCCCTGATG
TCACTGTAGGTATTTTACCTACATTGGACAAAAGTTACTCTTCTTCAGAT
GGATGCCAAGTTACCCACAAATACCTTTGAAAATGTCATGCAACTTGCAA
TTGAAGGCTGTAAAGCAGTGGCAAATTACATTCGAAGAAGTATTACTAGA
GAATACCAAGCAGTTGGAATGCCCCCGGGGGTTTAGAAAAAAAGTCCTTG
GGCAGGGGATACGGAATGGGAAAGGTTTACTCCAAACCAACCCCGGGTCC
TTTAAAAGCATGGTTGGCCTTTATTCCCATTTTTTGTTGGGGAAAAATTT
TTATATACACCCGAAATACCCCCTGGGGTGGAATTTGGTTGGGGGCACAT
ATTAAAATTTTTTGGGTTGGGGGGCCGCCCGGGGAAAACGCAATTTTCAA
AGAGTGACCAATGGAAAAAAATATCTATTATTTTTCCCCCGCATTTTTTA
AAAATTGGAAAAATTTTCTGTGTGTTTTTTTTTTTTTTTTGTCCCGGGGG
GAATAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAGAGAAAATAAA
AGAAAAAAAAAAAAAATAAAAAAGAAAAAAGGGGGGGCGGGGGGCGGCAC
ACCCACTTGAAAGGAAAAGTGACACACGAAGACACTTGTCTGAAAAATCT
GACACGA
back to top