EY675340

Overview
NameEY675340
Unique NameEY675340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675340_ssr715 microsatellite EY675340_ssr715:715..726. BLAST: Citrus ESTs to SwissProt
Homology
BLAST of EY675340 vs. ExPASy Swiss-Prot
Match: YJIR_ECOLI (Uncharacterized HTH-type transcriptional regulator yjiR OS=Escherichia coli (strain K12) GN=yjiR PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.274e-32
Identity = 53/74 (71.62%), Postives = 66/74 (89.19%), Query Frame = 2
Query:    2 ALLTLAQRFDVAIVEDDVYGELAYSYPRPRTIKSFDEDGRVVLCSSFSKTLAPGLRIGWVAPGRYLERVLNMKY 223
            A+L+LAQR D+ I EDDVYGELA  YPRPRTI S+D DGRV+LCSSFSK++APGLR+GWVAPGRY +++++MKY
Sbjct:  265 AVLSLAQRHDIVIFEDDVYGELATEYPRPRTIHSWDIDGRVLLCSSFSKSIAPGLRVGWVAPGRYHDKLMHMKY 338          

HSP 2 Score: 41.9726 bits (97), Expect = 6.274e-32
Identity = 19/46 (41.30%), Postives = 26/46 (56.52%), Query Frame = 3
Query:  273 FLKNGHFEPHLRRMRTQYKRNPDLMPQ*VTRFFPAGPAASRPKGNF 410
            F+  GH+  H+RRMR  Y+RN  L    +  +FP     +RPKG F
Sbjct:  355 FVLEGHYHRHIRRMRQIYQRNLALYTCWIREYFPCEICITRPKGGF 400          
BLAST of EY675340 vs. ExPASy Swiss-Prot
Match: YDCR_ECOLI (Uncharacterized HTH-type transcriptional regulator ydcR OS=Escherichia coli (strain K12) GN=ydcR PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.112e-14
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 2
Query:    5 LLTLAQRFDVAIVEDDVYGELAYSYPRPRTIKSFDEDGRVVLCSSFSKTLAPGLRIGWVAPGRYLERVLNMKYIST 232
            L+ L  +++V ++EDDVY EL +   +P   K++D    V+ CSSFSK L PG RIGWVA G++  ++  ++ +ST
Sbjct:  265 LVALLNQYNVTLIEDDVYSELYFGREKPLPAKAWDRHDGVLHCSSFSKCLVPGFRIGWVAAGKHARKIQRLQLMST 340          

HSP 2 Score: 25.409 bits (54), Expect = 7.112e-14
Identity = 11/36 (30.56%), Postives = 18/36 (50.00%), Query Frame = 3
Query:  270 EFLKNGHFEPHLRRMRTQYKRNPDLMPQ*VTRFFPA 377
            ++L    ++ HLRR+R Q         Q + R+ PA
Sbjct:  353 DYLSTRRYDAHLRRLRRQLAERKQRAWQALLRYLPA 388          
BLAST of EY675340 vs. ExPASy Swiss-Prot
Match: Y104_SULSO (Uncharacterized aminotransferase SSO0104 OS=Sulfolobus solfataricus GN=SSO0104 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.566e-13
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 2
Query:    5 LLTLAQRFDVAIVEDDVYGELAYSYPRPRTIKSFDEDGRVVLCSSFSKTLAPGLRIGWV 181
            LL +A ++D  I EDD YG L +    P  IK+FD++GRV+  S+FSK LAPGLR+GWV
Sbjct:  195 LLEIASKYDFLIFEDDAYGFLVFEGESPPPIKAFDKEGRVIYTSTFSKILAPGLRLGWV 253          

HSP 2 Score: 26.9498 bits (58), Expect = 1.566e-13
Identity = 12/45 (26.67%), Postives = 24/45 (53.33%), Query Frame = 3
Query:  270 EFLKNGHFEPHLRRMRTQYKRNPDLMPQ*VTRFFPAGPAASRPKG 404
            E ++ G  + +L ++R  YK   D+M + +  +FP     ++P G
Sbjct:  284 EAIRRGIIQNNLPKIRRVYKEKRDVMLEAIETYFPNDARWTKPVG 328          
The following BLAST results are available for this feature:
BLAST of EY675340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
YJIR_ECOLI6.274e-3271.62Uncharacterized HTH-type transcriptional regulator... [more]
YDCR_ECOLI7.112e-1442.11Uncharacterized HTH-type transcriptional regulator... [more]
Y104_SULSO1.566e-1354.24Uncharacterized aminotransferase SSO0104 OS=Sulfol... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-009-C07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675340 ID=EY675340; Name=EY675340; organism=Citrus sinensis; type=EST; length=740bp
CGCGCTGCTGACCCTGGCCCAGCGCTTCGACGTGGCAATCGTCGAAGACG
ATGTGTATGGCGAACTGGCCTACAGCTACCCGCGTCCACGCACTATCAAG
TCCTTCGACGAAGATGGCCGCGTCGTACTGTGCAGTTCCTTCTCGAAAAC
CCTGGCGCCCGGCCTGCGGATTGGCTGGGTAGCACCCGGTCGTTACCTCG
AGCGCGTCCTGAACATGAAATACATCAGCACCGGCGGCCACCGCGACCCA
GCCGCAGATCGCGATTGCCGAGTTTCTGAAAAATGGCCATTTCGAACCGC
ATTTGCGGCGGATGCGTACGCAATACAAGCGTAATCCCGACCTGATGCCT
CAATGAGTCACCCGCTTTTTCCCGGCGGGACCCGCCGCCAGTCGTCCAAA
GGGGAATTTTCATGCTGGGGGGGGAACCGCCGGGAAGGGTTCCAAAACCT
TGAACCTCAACGGGCTGCTAATGGAAAAAAGGGGAAAAAATGCCCGGGGG
AAATATCTTTTCCCCCCCCGGGAAAAACCGGGAAATTTTTGGGCCAGGAA
CTACCCTCCCCAACCAAACCCCCCCAATAGAAAGAAGGCGTGGCGCCAGG
GGGCGGCCCAACCCCCCCTCAGTGTGGTGGGGCGAAGAGGGGGGAAAATG
CCTTTTTTTGGGGAAAAAAACTCCGCTAATTATGCAACAATCCCCCCCGA
AACTCAAAAAACTTTTGTTGTTGTTGTAAACACCCCGCCG
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