EY675304

Overview
NameEY675304
Unique NameEY675304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length958
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675304 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.382e-50
Identity = 93/100 (93.00%), Postives = 96/100 (96.00%), Query Frame = 1
Query:   58 EIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSGN 357
            EIRRWQDIKNPGSVNQDPIFKQYSLP  EVGYPGGIFNPLNFAPT EAKEKE+ANGRLAMLAFLGFI+QHNVTGKGPF+NLLQHISDPWHNTIVQTL GN
Sbjct:  153 EIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLGGN 252          
BLAST of EY675304 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.170e-49
Identity = 91/98 (92.86%), Postives = 94/98 (95.92%), Query Frame = 1
Query:   58 EIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLS 351
            EIRRWQDIKNPGSVNQDPIFKQYSLP  EVGYPGGIFNPLNFAPT EAKEKELANGRLAMLAFLGF+VQHNVTGKGPFENLLQH+SDPWHNTIVQT +
Sbjct:  154 EIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTFN 251          
BLAST of EY675304 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.086e-45
Identity = 85/102 (83.33%), Postives = 92/102 (90.20%), Query Frame = 1
Query:   49 TTPEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSG 354
            T  EIRRWQDIKNPGSVNQDPIFK YSLPP+E GYPG +FNPLNFAP  E KEKELANGRLAMLAFLGF+VQHNV GKGPFENL QH++DPWHNTI+QT+SG
Sbjct:  130 TYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNFAPL-ENKEKELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQTISG 230          
BLAST of EY675304 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.152e-19
Identity = 52/104 (50.00%), Postives = 62/104 (59.62%), Query Frame = 1
Query:   58 EIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNF-----APTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLS 351
            E RRW DI  PG VN DPIF    L   +VGYPGG+ F+PL +     A   E + KE+ NGRLAMLA +G   QH  TG GP +NL  H++DP H TI    S
Sbjct:  165 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268          
BLAST of EY675304 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.152e-19
Identity = 52/104 (50.00%), Postives = 62/104 (59.62%), Query Frame = 1
Query:   58 EIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNF-----APTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLS 351
            E RRW DI  PG VN DPIF    L   +VGYPGG+ F+PL +     A   E + KE+ NGRLAMLA +G   QH  TG GP +NL  H++DP H TI    S
Sbjct:  165 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268          
BLAST of EY675304 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.200e-15
Identity = 49/109 (44.95%), Postives = 65/109 (59.63%), Query Frame = 1
Query:   58 EIRRWQDIKNPGSVNQDPIFKQYSLP-------PNEVGYPGG-IFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTL 348
            E RR+QD   PGS+      KQY L          +  YPGG +FNPL F   +    E K KE+ NGRLAMLA LG+ +Q  VTG GP++NLL H++DP +N ++ +L
Sbjct:  167 EHRRFQDWAKPGSMG-----KQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSL 270          
BLAST of EY675304 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.222e-14
Identity = 49/109 (44.95%), Postives = 63/109 (57.80%), Query Frame = 1
Query:   58 EIRRWQDIKNPGSVNQDPIFKQYSLP-------PNEVGYPGG-IFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTL 348
            E RR+QD   PGS+      KQY L             YPGG  FNPL F   +    E K KE+ NGRLAMLA LG+ +Q  VTG GP++NLL H++DP +N ++ +L
Sbjct:  169 EHRRFQDWAKPGSMG-----KQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSL 272          
BLAST of EY675304 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.234e-14
Identity = 40/72 (55.56%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  136 PNEVGYPGGIFNPLNF----APTDEAKEKELANGRLAMLAFLGFIVQHNV-TGKGPFENLLQHISDPWHNTI 336
            P +  YPGG F+PL F    A  +E K KE+ NGRLAMLAF+GF VQ +   G GP ENL  H++DPWHN I
Sbjct:  162 PEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233          

HSP 2 Score: 21.557 bits (44), Expect = 1.234e-14
Identity = 9/27 (33.33%), Postives = 16/27 (59.26%), Query Frame = 3
Query:   15 PTLFVIEFILFHYARDKKMARHKEPRK 95
            PT+  IEF+   +A +++    K+P K
Sbjct:  139 PTILAIEFLAIAFA-EQQRTMEKDPEK 164          
BLAST of EY675304 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.494e-12
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  151 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSG 354
            +PGG F+PL  A   E     K KE+ NGRLAM A LGF +Q  VTG+GP ENL +H+SDP+ N ++  ++G
Sbjct:  201 HPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAG 272          
BLAST of EY675304 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.494e-12
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 1
Query:  151 YPGGIFNPLNF----APTDEAKEKELANGRLAMLAFLGFIVQHNV-TGKGPFENLLQHISDPWHNTI 336
            YPGG F+PL +    A  +E K KE+ NGRLA+LA +GF VQ +   G GP ENL  H++DPWHN I
Sbjct:  168 YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNI 234          
The following BLAST results are available for this feature:
BLAST of EY675304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB24_PEA1.382e-5093.00Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH1.170e-4992.86Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB120_HORVU5.086e-4583.33Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB12_SOLLC2.152e-1950.00Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY2.152e-1950.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB13_SOLLC4.200e-1544.95Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.222e-1444.95Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB121_HORVU1.234e-1455.56Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB26_ARATH1.494e-1250.00Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB11_SOLLC1.494e-1253.73Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-008-H01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675304 ID=EY675304; Name=EY675304; organism=Citrus sinensis; type=EST; length=958bp
ACTTTGCATCATCCCCTACCCTTTTCGTGATCGAGTTCATCTTGTTCCAC
TACGCCCGAGATAAGAAGATGGCAAGACATAAAGAACCCAGGAAGTGTCA
ACCAAGACCCCATTTTCAAGCAGTACAGCTTGCCTCCAAACGAAGTTGGG
TACCCCGGTGGCATCTTCAACCCACTCAACTTTGCACCCACTGATGAGGC
AAAGGAGAAGGAGCTTGCCAATGGGAGATTGGCAATGTTGGCATTCTTGG
GATTTATTGTTCAGCACAATGTGACAGGCAAAGGGCCATTTGAAAACCTC
CTGCAACATATCTCTGACCCATGGCACAACACCATCGTCCAGACACTTAG
TGGTAATTAATCCAAGATGGATTGGCAATTCGGGATCCTGTTTCTTTCTT
TTGTAACCATGAAAGCGTGGAGTTTTTGAGTGAGATTTGACCATCAATGT
AAACATGGAAAACCCTCAAAGGTAAAGGGGAACTAAGATGGGAATTTATA
TAAACATTTTTAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGG
CGGGCGCCTCAAAAAGGAATTCAAGCTTAAAATAGGCCTGGAATGGAAAA
ATCAAAAACCCATTTTCTAAAGTGAGAACCTAAAAATGAAATTTCCTAGG
GCCGCAAGATTTATAAACCATACCGGAACAGGAGAAAAAAACCGATGGAA
AATAACCCAAAAATAAAAACGACATTTAGCAGCAAACACCCCCCAATATC
CCCCGAACGGGGGCGTAAAATACACAAAAAAAAACCCCCCCCACACAAAA
TCCCCCCCTTTTCTCCCAAAAGAATTTGCCCCCACGCCCTGAGAAGAGGG
AAAAAAGGGGGGGAAAAAGCCGACACATGAAAATAAAAGGGGAACCCAAA
ATATCACGAAACGAGAAGAGAAAGGGATGGGATGGGGGAGTGGTGGATAT
AGGACTTG
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