EY656932 | Citrus Genome Database

Overview


Name	EY656932
Unique Name	EY656932
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	910

Libraries


Library Name	Type
Sweet orange leaf, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.864e-33
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTIDNV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 65.4698 bits (158), Expect = 3.461e-11
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE ESSDTI NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 24.2534 bits (51), Expect = 3.461e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.864e-33
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTIDNV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 65.4698 bits (158), Expect = 3.461e-11
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE ESSDTI NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 24.2534 bits (51), Expect = 3.461e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.864e-33
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTIDNV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 65.4698 bits (158), Expect = 3.461e-11
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE ESSDTI NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 24.2534 bits (51), Expect = 3.461e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.864e-33
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTIDNV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 65.4698 bits (158), Expect = 3.461e-11
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE ESSDTI NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 24.2534 bits (51), Expect = 3.461e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.864e-33
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTIDNV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 65.4698 bits (158), Expect = 3.461e-11
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE ESSDTI NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 24.2534 bits (51), Expect = 3.461e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.864e-33
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTIDNV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 65.4698 bits (158), Expect = 3.461e-11
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE ESSDTI NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 24.2534 bits (51), Expect = 3.461e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.864e-33
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTIDNV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 65.4698 bits (158), Expect = 3.461e-11
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE ESSDTI NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 24.2534 bits (51), Expect = 3.461e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.864e-33
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTIDNV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 65.4698 bits (158), Expect = 3.461e-11
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE ESSDTI NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 24.2534 bits (51), Expect = 3.461e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.864e-33
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTIDNV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 65.4698 bits (158), Expect = 3.461e-11
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE ESSDTI NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 24.2534 bits (51), Expect = 3.461e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY656932 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.864e-33
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1

Query:   79 MQIFVKTLTGKTITLEVEISDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGG 306
            MQIFVKTLTGKTITLEVE SDTIDNV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI+KESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 65.4698 bits (158), Expect = 3.461e-11
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  307 MLIFVKTLTGRTITLEGESSDTIKNVKGKIAGKEGIRPEGERLFLPGQAL 456
            M IFVKTLTG+TITLE ESSDTI NVK KI  KEGI P+ +RL   G+ L
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 3 Score: 24.2534 bits (51), Expect = 3.461e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2

Query:  458 EEGRPPDNYNTPKGTLAHLGIHLGGG 535
            E+GR   +YN  K +  HL + L GG
Sbjct:   51 EDGRTLADYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of EY656932 vs. ExPASy Swiss-Prot

BLAST of EY656932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92


Match Name	E-value	Identity	Description
UBIQ_WHEAT	1.864e-33	96.05	Ubiquitin OS=Triticum aestivum PE=3 SV=1	[more]
UBIQ_SOYBN	1.864e-33	96.05	Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1	[more]
UBIQ_SOLTU	1.864e-33	96.05	Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1	[more]
UBIQ_SOLLC	1.864e-33	96.05	Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=...	[more]
UBIQ_PETCR	1.864e-33	96.05	Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3...	[more]
UBIQ_PEA	1.864e-33	96.05	Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1	[more]
UBIQ_ORYSJ	1.864e-33	96.05	Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ...	[more]
UBIQ_NICSY	1.864e-33	96.05	Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE...	[more]
UBIQ_MAIZE	1.864e-33	96.05	Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1	[more]
UBIQ_LUPPO	1.864e-33	96.05	Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-100-060-C01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY656932 ID=EY656932; Name=EY656932; organism=Citrus sinensis; type=EST; length=910bp
ATTAAACCAATAAACCACCCTTTTGAGGGGAAAGATATTTAGTTTAGATA
GNGAGGCCCCCTTTGAGAGCCTTCCAACATGCAGATCTTTGTGAAAACTT
TGACCGGCAAGACCATCACTCTCGAGGTGGAGATCTCCGACACGATCGAC
AACGTCTAGGCTAAGATCCAGGACAAGGAAGGGATTCCACCGGACCAGCA
GCGGCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGGCGCACCTTGGCGG
ATTACAACATCCGGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTCCGC
GGCGGCATGCTGATCTTCGTCAAGACTCTGACCGGGAGGACGATCACCCT
GGAGGGGGAAAGCTCCGACACGATCAAAAACGTGAAGGGGAAGATCGCTG
GAAAGGAAGGGATCCGCCCGGAGGGGGAGAGGCTCTTCCTTCCCGGGCAG
GCACTGGGAGGAAGGCCGACCCCCGGACAATTATAACACTCCGAAAGGAA
CCCTTGCTCACCTTGGGATTCACCTGGGGGGGGGAAAGGAGATTTTCGGC
CGGAACTTAACCGGGAAAAAAACCCCCGGCAGGGGAGAGCGCCGAGACAG
AGGAACACAGAAAGCCAAAAAAAGGGAAAAGACGGGGATCCCCCAGAGAA
TGACGAGACACCCATCAGGGGGAGAAAATAAAGGAGAGCGAGACGCACGC
AGTAAAACCGTCAGGAGGGAGGCACGTCCCAAATTTCTTCACTACGAGGG
GGAGAGAGTAAAGAAAAATAAGGAAAAACGGAGTAGGTATATAAACGGGT
CTGAGAAAAAAAATTGGTTATAGGGCGAGAGGGTGATGTTAGGTTTAAAT
TGCGAGTTTGAGGGAGCTATCGGGACGTGTAGTCTCCATTCTTAAGATTG
TCAGAGACTT