EY675156

Overview
NameEY675156
Unique NameEY675156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1033
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675156 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 5.809e-74
Identity = 132/201 (65.67%), Postives = 166/201 (82.59%), Query Frame = 1
Query:  121 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIEYDKLEEKALDFRPKLIICGGRAYPRDGEYAKFQTVAEKWG 723
            N S+   DPEI+DL+ KEK+RQ  G+ELIASENFTS AV+E++GS  TNKY+EG+PG RYYGGNE +D++ENLC  RAL+TF+L+P +WGVNVQPYSGS ANFAA+T +L+PHDRIMGLDLPSGGHLTHGY T   KKISATSI+FES+PY+VN  TGY++Y+K+E  A  FRPKL+I G  AYPR+ +Y + + +A+K G
Sbjct:   31 NRSVSESDPEIYDLMMKEKQRQFTGLELIASENFTSRAVMESIGSCFTNKYAEGLPGARYYGGNEVVDQLENLCIKRALETFNLNPEEWGVNVQPYSGSTANFAAFTGLLKPHDRIMGLDLPSGGHLTHGYQTD-KKKISATSIFFESMPYQVN-ETGYVDYNKMEANAALFRPKLLIAGASAYPREWDYERMRKIADKHG 229          
BLAST of EY675156 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 4.163e-72
Identity = 138/248 (55.65%), Postives = 175/248 (70.56%), Query Frame = 1
Query:    1 ALRYGRNSGSTTRPHFPFFSFSVN------PENGKKEKMDPVNEWG---NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIEYDKLEEKALDFRPKLIICGGRAYPRDGEYAKFQTVAEK 717
            A+   + S S  +   P FS S        P+    +K +P   W    NS LE +DPEI D+IE EK RQ +G+ELI SENFTS +V++A+GS +TNKYSEG PG RYYGGNE+ID  E LC+ RAL+ F LDP +WGVNVQP SGSP+NF  YTA+L+PHDRIM LDLP GGHL+HGY T   KKISA SI+FE++PY+++ STGYI+YD+LE+ A  FRPKLI+ G  AY R  +YA+ + V +K
Sbjct:    4 AMALRKLSSSVNKSSRPLFSASSLYYKSSLPDEAVYDKENPRVTWPKQLNSPLEVIDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTD-TKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDK 250          
BLAST of EY675156 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 7.102e-72
Identity = 135/224 (60.27%), Postives = 165/224 (73.66%), Query Frame = 1
Query:   55 FSFSVNPENGKKEKMDPVNEWG---NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIEYDKLEEKALDFRPKLIICGGRAYPRDGEYAKFQTVAEK 717
            +S S  P     EK  P   W    N+ LE VDPEI D+IE EK RQ +G+ELI SENFTS +V++A+GS +TNKYSEG PG RYYGGNE+ID  E LC+ RAL+ F LDP +WGVNVQP SGSPANF  YTA+L+ HDRIM LDLP GGHL+HGY T   KKISA SI+FE++PY++N STGYI+YD+LE+ A  FRPKLI+ G  AY R  +YA+ + V +K
Sbjct:   28 YSMSSLPSEAVYEKERPGVTWPKQLNAPLEVVDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHLSHGYQTD-TKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDK 250          
BLAST of EY675156 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 9.275e-72
Identity = 131/202 (64.85%), Postives = 163/202 (80.69%), Query Frame = 1
Query:  118 GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIEYDKLEEKALDFRPKLIICGGRAYPRDGEYAKFQTVAEKWG 723
            GN+ L+ VD EI +L+ +EK RQ +G+ELIASENFTS AV+EALGS  TNKY+EG PG+RYYGG E +DE+E LC+ RAL+ F LD ++WGVNVQPYSGSPANFA YTA+L PHDRIMGLDLPSGGHLTHGY T   KKISA+SI+FES+PY++ +  G I+Y +LEE AL F+PKLII G  AYPR+ +Y + + +A+K G
Sbjct:    6 GNTPLKEVDNEIFELMNREKDRQFKGLELIASENFTSRAVMEALGSHFTNKYAEGYPGSRYYGGTEVVDELETLCQKRALKAFRLDESKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGYQTD-KKKISASSIFFESMPYQIGAD-GLIDYQRLEENALLFKPKLIISGASAYPREWDYKRMRAIADKVG 205          
BLAST of EY675156 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 4.603e-71
Identity = 132/198 (66.67%), Postives = 155/198 (78.28%), Query Frame = 1
Query:  130 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIEYDKLEEKALDFRPKLIICGGRAYPRDGEYAKFQTVAEKWG 723
            L+  D E++++I+KE  RQ  G+ELIASENF S AV+EALGS L NKYSEG PG RYYGG EFIDE+E LC+ RALQ + LDP  WGVNVQPYSGSPANFA YTA++EPH RIMGLDLP GGHLTHG+ T   KKISATSI+FES+PYKVN  TGYI YD+LEE A  F PKLII G   Y R+ EYA+ + +A++ G
Sbjct:   26 LKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTD-KKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCYSRNLEYARLRKIADENG 222          
BLAST of EY675156 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 6.012e-71
Identity = 131/198 (66.16%), Postives = 155/198 (78.28%), Query Frame = 1
Query:  130 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIEYDKLEEKALDFRPKLIICGGRAYPRDGEYAKFQTVAEKWG 723
            L+  D E++++I+KE  RQ  G+EL ASENF S AV+EALGS L NKYSEG PG RYYGG EFIDE+E LC+ RALQ + LDP  WGVNVQPYSGSPANFA YTA++EPH RIMGLDLP GGHLTHG+ T G KKISATSI+FES+PYKVN  TGYI YD+LEE A  F PKLII G   Y R+ +YA+ + +A++ G
Sbjct:   26 LKDSDVEVYNIIKKESNRQRVGLELFASENFASQAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMT-GKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCYSRNLDYARLRKIADENG 222          
BLAST of EY675156 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 266.544 bits (680), Expect = 1.749e-70
Identity = 131/198 (66.16%), Postives = 154/198 (77.78%), Query Frame = 1
Query:  130 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIEYDKLEEKALDFRPKLIICGGRAYPRDGEYAKFQTVAEKWG 723
            L+  D E++ +I+KE  RQ  G+ELIASENF S AV+EALGS+L NKYSEG PG RYYGG EFIDE+E LC+ RALQ +HLDP  WGVNVQPYSGSPANFA YTA++EPH RIMGLDLP GGHLTHG+ T   KKISATSI+FES+PYKV   TGYI YD+LEE A  F PKLII G   Y R+ +YA+ + +A+  G
Sbjct:   20 LKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSSLNNKYSEGYPGQRYYGGTEFIDELEMLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTD-KKKISATSIFFESMPYKVYPETGYINYDQLEENASLFHPKLIIAGTSCYSRNLDYARLRKIADDNG 216          
BLAST of EY675156 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.984e-70
Identity = 131/200 (65.50%), Postives = 155/200 (77.50%), Query Frame = 1
Query:  118 GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIEYDKLEEKALDFRPKLIICGGRAYPRDGEYAKFQTVAEK 717
            G  SL   DPE+ +L+ +EK RQCRG+ELIASENF S A +EALGS L NKYSEG PG RYYGG E +DEIE LC+ RAL+ F LDP QWGVNVQPYSGSPAN AAYTA+L+PHDRIMGLDLP GGHLTHG Y S  K+ISATSI+FES+PYK+N  TG I+YD+L   A  F+P+LII G  AY R  +YA+ + V ++
Sbjct:   45 GQESLSDSDPEMWELLRREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHG-YMSDVKRISATSIFFESMPYKLNPQTGLIDYDQLALTARLFKPRLIIAGTSAYARLIDYARMREVCDE 243          
BLAST of EY675156 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 3.897e-70
Identity = 133/224 (59.38%), Postives = 163/224 (72.77%), Query Frame = 1
Query:   55 FSFSVNPENGKKEKMDPVNEWG---NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIEYDKLEEKALDFRPKLIICGGRAYPRDGEYAKFQTVAEK 717
            +S S  P     EK  P   W    N+ LE  DPEI D+IE EK RQ +G+ELI SENFTS +V++A+GS +TNKYSEG PG RYYGGNE+ID  E LC+ RAL+ F LD  +WGVNVQP SGSPANF  YTA+L+ HDRIM LDLP GGHL+HGY T   KKISA SI+FE++PY++N STGYI+YD+LE+ A  FRPKLI+ G  AY R  +YA+ + V +K
Sbjct:   28 YSMSSLPSEAVYEKERPGVTWPKQLNAPLEVGDPEIADIIELEKARQWKGLELILSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDAAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHLSHGYQTD-TKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDK 250          
BLAST of EY675156 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 264.618 bits (675), Expect = 6.647e-70
Identity = 134/227 (59.03%), Postives = 165/227 (72.69%), Query Frame = 1
Query:   49 PFFSFSVNPENGKKEKM---DPVNEW-GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIEYDKLEEKALDFRPKLIICGGRAYPRDGEYAKFQTVAEK 717
            P    +V  ++GK  +    +    W G  SL   DPE+ +L+++EK RQCRG+ELIASENF   A +EALGS L NKYSEG PG RYYGG E +DEIE LC+ RAL+ F LDP QWGVNVQPYSGSPAN AAYTA+L+PHDRIMGLDLP GGHLTHG Y S  K++SATSI+FES+PYK+N  TG I+Y++L   A  FRP+LII G  AY R  +YA+ + V ++
Sbjct:   18 PLVRTAVRAQHGKAAQTQTGEASRGWTGQESLSDTDPEMWELLQREKDRQCRGLELIASENFCIRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHG-YMSDVKRVSATSIFFESMPYKLNPQTGLIDYEQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDE 243          
The following BLAST results are available for this feature:
BLAST of EY675156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC2_DICDI5.809e-7465.67Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYM_PEA4.163e-7255.65Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_FLAPR7.102e-7260.27Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYC1_DICDI9.275e-7264.85Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]
GLYC_HUMAN4.603e-7166.67Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]
GLYC_PONAB6.012e-7166.16Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYC_MOUSE1.749e-7066.16Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]
GLYM_BOVIN2.984e-7065.50Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYN_FLAPR3.897e-7059.38Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYM_RABIT6.647e-7059.03Serine hydroxymethyltransferase, mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-H03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675156 ID=EY675156; Name=EY675156; organism=Citrus sinensis; type=EST; length=1033bp
GCACTGCGGTACGGTCGGAATTCCGGGTCGACCACGCGTCCGCATTTTCC
CTTTTTTTCCTTTTCAGTGAATCCAGAAAACGGAAAAAAAGAAAAAATGG
ATCCAGTGAACGAGTGGGGCAACTCATCTCTTGAAACCGTGGACCCAGAA
ATTCACGACCTGATCGAGAAAGAGAAGCGCCGACAATGCCGCGGCATCGA
GCTCATCGCCTCCGAGAACTTCACCTCCTTCGCCGTTATCGAAGCCCTCG
GCAGCGCCCTCACCAACAAATACTCAGAGGGAATGCCCGGCAACCGTTAC
TACGGAGGCAACGAATTCATCGACGAGATCGAGAATCTCTGCCGGTCGAG
AGCTTTACAAACTTTCCATTTGGACCCCACCCAGTGGGGTGTCAACGTTC
AGCCTTACTCCGGCTCGCCGGCCAACTTCGCCGCTTACACGGCGGTGCTC
GAGCCTCATGACCGTATCATGGGGCTGGACTTGCCGTCCGGAGGGCATTT
GACTCATGGGTATTACACTTCTGGCGGGAAAAAGATATCGGCGACTTCGA
TTTACTTCGAGAGCTTGCCGTACAAGGTGAATTCGAGTACTGGGTATATT
GAATACGATAAGTTGGAGGAGAAGGCGTTGGATTTTAGGCCGAAGTTGAT
CATTTGCGGTGGGAGGGCGTATCCAAGGGACGGGGAATATGCTAAATTCC
AAACTGTTGCTGAAAAATGGGGGGGCCCTTTTGCCCCGTGATTAGGGCCA
AAACAATGGGCCTGGTTGGCTGCTCAGGGAACTGGCAAACCCCTTTGAAT
ACGGGCCCCATAGTCCCAACCCCAAATCCCAAAAAATCTTGGGGGGGGCC
CTGGGGGGGGGGATTGATTTTTTTCCCCGGAGGGGGGCCCTAAAACCCCC
CCAAAAAAGGGGGCCCACCCAAGAGGGGGGGGGGGGGGTTTTTTATAATT
TTTTAAAAAAAAAAAAATATCCAATTTTTTTTGCTGTCTTCTCTCCCCCC
CCCCCCCTCCTATGAGGGGGGGGGGGGGGCCCC
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