EY675151

Overview
NameEY675151
Unique NameEY675151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1052
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675151_ssr102 microsatellite EY675151_ssr102:102..111. BLAST: Citrus ESTs to Prunus persica proteins V1
EY675151_ssr159 microsatellite EY675151_ssr159:159..173. BLAST: Citrus ESTs to Prunus persica proteins V1
EY675151_ssr205 microsatellite EY675151_ssr205:205..216. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY675151 vs. ExPASy Swiss-Prot
Match: YAB2_ARATH (Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.394e-22
Identity = 73/193 (37.82%), Postives = 100/193 (51.81%), Query Frame = 3
Query:  276 MSLDLSSERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSAL---QAVPLQDPQKQHINLEDSIT--KDCGSSSKCNKFSSAFENAKHETPSNASYSSPKKKT------NNFLLHKIGFIKEENPKD*GQYPLKSALKKTFSKATKKLGKFSPTFPFELKVGWPKTKPKIKKGSAPTPKRG 821
            MS+D SSERVCYVHC++C TILAVSVP +SLF +VTVRCGHC NLL++N+  +L    A P+    + H     S+   KDC SSS+    ++  EN   E P       P+K+       N F+  +I  IK  NP        + + ++ FS A K    F P   F LK+   K   ++ +  A     G
Sbjct:    1 MSVDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPIHQDLQPHRQHTTSLVTRKDCASSSRST--NNLSENIDREAPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKACNP--------EISHREAFSTAAKNWAHF-PHIHFGLKLDGNKKGKQLDQSVAGQKSNG 182          
BLAST of EY675151 vs. ExPASy Swiss-Prot
Match: YAB2_ORYSJ (Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.907e-20
Identity = 69/185 (37.30%), Postives = 97/185 (52.43%), Query Frame = 3
Query:  297 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVP----LQDPQKQHINLEDSITKDCGSSSKCNKFSSAFENAKHETPSNASYSSPKKKT------NNFLLHKIGFIKEENPKD*GQYPLKSALKKTFSKATKKLGKFSPTFPFELKVGWPKTKPKIKKG-SAPTPKR 818
            E VCYVHCN+CNTI AVSVP +S+ NIVTVRCGHC +LL+VN+   +QA+P    LQD  K H         + GSSS+  +    F  +K++T        P+K+       N F+  +I  IK  NP          + ++ FS A K    F P   F L  G  ++  K+ +   AP+P++
Sbjct:   10 EHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQDNLKMHNMSFRENYSEYGSSSRYGRVPMMF--SKNDTEHMLHVRPPEKRQRVPSAYNRFIKEEIRRIKANNP--------DISHREAFSTAAKNWAHF-PNIHFGL--GSHESSKKLDEAIGAPSPQK 181          
BLAST of EY675151 vs. ExPASy Swiss-Prot
Match: YAB6_ORYSJ (Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.061e-18
Identity = 72/199 (36.18%), Postives = 96/199 (48.24%), Query Frame = 3
Query:  294 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVP-LQDPQKQHINLEDSITKDC---GSSSKCNKFSSAFENAKHETPSNA----SYSS-------------PKKKT------NNFLLHKIGFIKEENPKD*GQYPLKSALKKTFSKATKKLGKFSPTFPFELKVGWPKTKPKIKKGSAPT 809
            +E+VCYVHCN+CNTILAVSVP +S+ NIVTVRCGHC NLL+VN+   + + P LQD    H +L++S    C    S      FS+A  ++K   P  A    SYS              P+K+       N F+  +I  IK  NP          + ++ FS A K    + P   F L  G    K  +     PT
Sbjct:    8 AEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQD--HHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALHARPPEKRQRVPSAYNRFIKEEIRRIKANNP--------DISHREAFSTAAKNWAHY-PNIHFGLSPGHEGGKKLVDVDPIPT 195          
BLAST of EY675151 vs. ExPASy Swiss-Prot
Match: YAB5_ARATH (Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.916e-18
Identity = 53/128 (41.41%), Postives = 75/128 (58.59%), Query Frame = 3
Query:  288 LSSERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQKQHINLEDSITKDCGSSSKCNKFSSAFENAKHETPSNASYSSPKKKT------NNFLLHKIGFIKEENP 653
            +++E++CY+ CN+CN ILAV+VPCSSLF+IVTVRCGHC NL +VNM +ALQ+  L  P  Q  N       + GSSS+ +    +  + +  T        P+K+       N F+  +I  IK  NP
Sbjct:    6 MATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQS--LSRPNFQATNY---AVPEYGSSSRSHTKIPSRISTRTITEQRIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNP 128          
BLAST of EY675151 vs. ExPASy Swiss-Prot
Match: YAB1_ORYSJ (Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.673e-16
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 3
Query:  276 MSLDLSSERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQKQHINLEDSITKDCGSSSKCNKFSSAFENAKHETPSNASYSSPKKKT------NNFLLHKIGFIKEENPK 656
            MS+  +SE VCYV+CNYCNTIL V+VP +  +NIVTVRCGHC  +L++++    QA  +QD Q Q+   + +       +S+  + S+A           +    P+K+       N F+  +I  IK  NP+
Sbjct:    1 MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDHQVQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNRFIKEEIQRIKTSNPE 133          
BLAST of EY675151 vs. ExPASy Swiss-Prot
Match: YAB4_ORYSJ (Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.409e-16
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 3
Query:  294 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQKQ 470
            +E++CYVHCN C+TILAV VPCSSLF  VTVRCGHCANLL+VN+   L   P   P  Q
Sbjct:   22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQ 80          
BLAST of EY675151 vs. ExPASy Swiss-Prot
Match: YAB4_ORYSI (Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.409e-16
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 3
Query:  294 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQKQ 470
            +E++CYVHCN C+TILAV VPCSSLF  VTVRCGHCANLL+VN+   L   P   P  Q
Sbjct:   22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQ 80          
BLAST of EY675151 vs. ExPASy Swiss-Prot
Match: YAB5_ORYSJ (Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.677e-15
Identity = 56/165 (33.94%), Postives = 76/165 (46.06%), Query Frame = 3
Query:  297 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM--------VSALQAVP----LQDPQKQHINLED-----------------------SITKDCGSSSKCNKFSSAFENAKHETPS------NASYSSPKKKT-----NNFLLHKIGFIKEENP 653
            E++CYVHCN+C+TILAV VPCSSLF  VTVRCGHCANLL+VN+         S    +P    L  P   H  L++                       S    C +++     +SA   A    P       +A+ +S K++      N F+  +I  IK  NP
Sbjct:   29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNP 193          
BLAST of EY675151 vs. ExPASy Swiss-Prot
Match: YAB5_ORYSI (Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 3.677e-15
Identity = 56/165 (33.94%), Postives = 76/165 (46.06%), Query Frame = 3
Query:  297 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM--------VSALQAVP----LQDPQKQHINLED-----------------------SITKDCGSSSKCNKFSSAFENAKHETPS------NASYSSPKKKT-----NNFLLHKIGFIKEENP 653
            E++CYVHCN+C+TILAV VPCSSLF  VTVRCGHCANLL+VN+         S    +P    L  P   H  L++                       S    C +++     +SA   A    P       +A+ +S K++      N F+  +I  IK  NP
Sbjct:   29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNP 193          
BLAST of EY675151 vs. ExPASy Swiss-Prot
Match: YAB3_ORYSJ (Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.018e-13
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 3
Query:  285 DLSSERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM 425
            D   E++CYVHC+YC+T+L VSVP SSLF  VTVRCGHC++LL VNM
Sbjct:   54 DSEQEQLCYVHCHYCDTVLVVSVPSSSLFETVTVRCGHCSSLLTVNM 100          
The following BLAST results are available for this feature:
BLAST of EY675151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
YAB2_ARATH1.394e-2237.82Putative axial regulator YABBY 2 OS=Arabidopsis th... [more]
YAB2_ORYSJ2.907e-2037.30Protein YABBY 2 OS=Oryza sativa subsp. japonica GN... [more]
YAB6_ORYSJ6.061e-1836.18Protein YABBY 6 OS=Oryza sativa subsp. japonica GN... [more]
YAB5_ARATH7.916e-1841.41Axial regulator YABBY 5 OS=Arabidopsis thaliana GN... [more]
YAB1_ORYSJ5.673e-1636.09Protein YABBY 1 OS=Oryza sativa subsp. japonica GN... [more]
YAB4_ORYSJ7.409e-1664.41Protein YABBY 4 OS=Oryza sativa subsp. japonica GN... [more]
YAB4_ORYSI7.409e-1664.41Protein YABBY 4 OS=Oryza sativa subsp. indica GN=Y... [more]
YAB5_ORYSJ3.677e-1533.94Protein YABBY 5 OS=Oryza sativa subsp. japonica GN... [more]
YAB5_ORYSI3.677e-1533.94Protein YABBY 5 OS=Oryza sativa subsp. indica GN=Y... [more]
YAB3_ORYSJ2.018e-1368.09Protein YABBY 3 OS=Oryza sativa subsp. japonica GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-G08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675151 ID=EY675151; Name=EY675151; organism=Citrus sinensis; type=EST; length=1052bp
AAAGAAACCCACTACTCTACATATACTCTCCCCTACACTTCACTCCCGAT
CAGACTTCTCCTTTCAGATTTTTTCCTTCTCTTTTTATCACCATTTTCTC
CCTCTCTCTCTCCAAATAATTATTATTTATACATGAAATCAAACCATTTT
GTTTTGTTTTCTTCTTCTTCTTCGTCTTTGTCTTTCTTTTAATTTGTTCA
AGATTTGATTGATTGATAATAGAACTCTTGCGTTTCTATTGTTTGTCGGT
ACACTTCTTGATCTCCACTGAAACTATGTCACTGGACTTGTCATCTGAAC
GTGTTTGTTATGTTCACTGCAACTACTGCAACACCATTTTAGCGGTGAGT
GTTCCTTGCTCAAGTTTGTTCAACATTGTGACTGTTAGATGTGGGCATTG
CGCCAATTTGCTAAATGTAAACATGGTATCTGCACTTCAAGCAGTTCCTC
TTCAAGACCCTCAGAAACAACACATAAACCTAGAAGATTCCATTACTAAG
GATTGTGGATCATCTTCAAAATGCAATAAGTTTTCTTCAGCATTTGAAAA
TGCAAAGCATGAAACTCCCTCAAATGCCTCCTATTCGTCCCCCAAAAAAA
AGACAAACAATTTCCTTCTGCATAAAATAGGGTTTATCAAGGAAGAAAAT
CCAAAGGATTAAGGCCAGTACCCCCTGAAATCCGCCCTAAAAAAAACTTT
TAGCAAAGCCACCAAAAAATTGGGCAAATTTTCCCCCACTTTCCCTTTTG
AATTAAAAGTGGGATGGCCAAAAACAAAACCAAAAATAAAAAAAGGGTCG
GCGCCCACTCCCAAAAGGGGCCCTCAAAAGTCCCAAGGGGATTTTCTCTA
AAAAAAAATTTTTTAATTAAAAATATTTTATGAAAGTGGGATGAATAAAA
GCCCTCGGGCCCCCCCCAAAAACAAAAAAATTCTCAATATAAAATTATTT
TTTTAAAAAAAAACTCTCGCGGAAAAAACCAACCAAAGTCTCTCAATAAT
AAAAAAAAAAAAAAAAAATATCTTTTCATCCCCCTCTTTGTGTTTGCATT
TA
back to top