EY675117

Overview
NameEY675117
Unique NameEY675117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length983
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675117_ssr939 microsatellite EY675117_ssr939:939..950. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 9.492e-54
Identity = 96/137 (70.07%), Postives = 116/137 (84.67%), Query Frame = 3
Query:   90 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGK 500
            N S+   DPEI+DL+ KEK+RQ  G+ELIASENFTS AV+E++GS  TNKY+EG+PG RYYGGNE +D++ENLC  RAL+TF+L+P +WGVNVQPYSGS ANFAA+T +L+PHDRIMGLDLPSGGHLTHGY T   K
Sbjct:   31 NRSVSESDPEIYDLMMKEKQRQFTGLELIASENFTSRAVMESIGSCFTNKYAEGLPGARYYGGNEVVDQLENLCIKRALETFNLNPEEWGVNVQPYSGSTANFAAFTGLLKPHDRIMGLDLPSGGHLTHGYQTDKKK 167          

HSP 2 Score: 25.0238 bits (53), Expect = 9.492e-54
Identity = 17/46 (36.96%), Postives = 27/46 (58.70%), Query Frame = 2
Query:  494 REKISATSIYFQELGPYKGEISNTGVNWITKNWRKRGWILGPKLII 631
            ++KISATSI+F+ + PY  +++ TG     K       +  PKL+I
Sbjct:  165 KKKISATSIFFESM-PY--QVNETGYVDYNK-MEANAALFRPKLLI 206          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 4.039e-53
Identity = 102/150 (68.00%), Postives = 115/150 (76.67%), Query Frame = 3
Query:   87 GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKRYRRLQFTFKSL 536
            G  SL   DPE+ +L+ +EK RQCRG+ELIASENF S A +EALGS L NKYSEG PG RYYGG E +DEIE LC+ RAL+ F LDP QWGVNVQPYSGSPAN AAYTA+L+PHDRIMGLDLP GGHLTHG Y S  KR       F+S+
Sbjct:   45 GQESLSDSDPEMWELLRREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHG-YMSDVKRISATSIFFESM 193          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 5.275e-53
Identity = 106/177 (59.89%), Postives = 125/177 (70.62%), Query Frame = 3
Query:   18 PFFSFSVNPENGKKEKM---DPVNEW-GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKRYRRLQFTFKSL 536
            P    +V  ++GK  +    +    W G  SL   DPE+ +L+++EK RQCRG+ELIASENF   A +EALGS L NKYSEG PG RYYGG E +DEIE LC+ RAL+ F LDP QWGVNVQPYSGSPAN AAYTA+L+PHDRIMGLDLP GGHLTHG Y S  KR       F+S+
Sbjct:   18 PLVRTAVRAQHGKAAQTQTGEASRGWTGQESLSDTDPEMWELLQREKDRQCRGLELIASENFCIRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHG-YMSDVKRVSATSIFFESM 193          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 207.994 bits (528), Expect = 6.890e-53
Identity = 101/150 (67.33%), Postives = 115/150 (76.67%), Query Frame = 3
Query:   87 GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKRYRRLQFTFKSL 536
            G  SL   DPE+ +L+++EK RQCRG+ELIASENF S A +EALGS L NKYSEG PG RYYGG E +DEIE LC+ RAL+ F LDP QWGVNVQPYSGSPAN A YTA+L+PHDRIMGLDLP GGHLTHG Y S  KR       F+S+
Sbjct:   45 GQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHG-YMSDVKRISATSIFFESM 193          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.618e-52
Identity = 97/138 (70.29%), Postives = 114/138 (82.61%), Query Frame = 3
Query:   87 GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGK 500
            GN+ L+ VD EI +L+ +EK RQ +G+ELIASENFTS AV+EALGS  TNKY+EG PG+RYYGG E +DE+E LC+ RAL+ F LD ++WGVNVQPYSGSPANFA YTA+L PHDRIMGLDLPSGGHLTHGY T   K
Sbjct:    6 GNTPLKEVDNEIFELMNREKDRQFKGLELIASENFTSRAVMEALGSHFTNKYAEGYPGSRYYGGTEVVDELETLCQKRALKAFRLDESKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGYQTDKKK 143          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 8.602e-52
Identity = 94/134 (70.15%), Postives = 108/134 (80.60%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGK 500
            L+  D E++ +I+KE  RQ  G+ELIASENF S AV+EALGS+L NKYSEG PG RYYGG EFIDE+E LC+ RALQ +HLDP  WGVNVQPYSGSPANFA YTA++EPH RIMGLDLP GGHLTHG+ T   K
Sbjct:   20 LKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSSLNNKYSEGYPGQRYYGGTEFIDELEMLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKK 153          

HSP 2 Score: 26.5646 bits (57), Expect = 8.602e-52
Identity = 17/46 (36.96%), Postives = 26/46 (56.52%), Query Frame = 2
Query:  494 REKISATSIYFQELGPYKGEISNTGVNWITKNWRKRGWILGPKLII 631
            ++KISATSI+F+ + PYK       +N+      +   +  PKLII
Sbjct:  151 KKKISATSIFFESM-PYKVYPETGYINY--DQLEENASLFHPKLII 193          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.299e-51
Identity = 97/156 (62.18%), Postives = 117/156 (75.00%), Query Frame = 3
Query:   42 PENGKKEKMDPVNEWG---NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGK 500
            P+    +K +P   W    NS LE +DPEI D+IE EK RQ +G+ELI SENFTS +V++A+GS +TNKYSEG PG RYYGGNE+ID  E LC+ RAL+ F LDP +WGVNVQP SGSP+NF  YTA+L+PHDRIM LDLP GGHL+HGY T   K
Sbjct:   34 PDEAVYDKENPRVTWPKQLNSPLEVIDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKK 189          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.781e-51
Identity = 100/162 (61.73%), Postives = 117/162 (72.22%), Query Frame = 3
Query:   24 FSFSVNPENGKKEKMDPVNEWG---NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGK 500
            +S S  P     EK  P   W    N+ LE VDPEI D+IE EK RQ +G+ELI SENFTS +V++A+GS +TNKYSEG PG RYYGGNE+ID  E LC+ RAL+ F LDP +WGVNVQP SGSPANF  YTA+L+ HDRIM LDLP GGHL+HGY T   K
Sbjct:   28 YSMSSLPSEAVYEKERPGVTWPKQLNAPLEVVDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHLSHGYQTDTKK 189          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 4.219e-51
Identity = 93/134 (69.40%), Postives = 107/134 (79.85%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGK 500
            L+  D E++++I+KE  RQ  G+ELIASENF S AV+EALGS L NKYSEG PG RYYGG EFIDE+E LC+ RALQ + LDP  WGVNVQPYSGSPANFA YTA++EPH RIMGLDLP GGHLTHG+ T   K
Sbjct:   26 LKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKK 159          

HSP 2 Score: 27.335 bits (59), Expect = 4.219e-51
Identity = 17/46 (36.96%), Postives = 26/46 (56.52%), Query Frame = 2
Query:  494 REKISATSIYFQELGPYKGEISNTGVNWITKNWRKRGWILGPKLII 631
            ++KISATSI+F+ + PYK       +N+      +   +  PKLII
Sbjct:  157 KKKISATSIFFESM-PYKVNPDTGYINY--DQLEENARLFHPKLII 199          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 7.165e-51
Identity = 96/146 (65.75%), Postives = 118/146 (80.82%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKRYRRLQFTFKSL 536
            +E VDPE+ D+++ EK+RQ RG+ELIASENFTS AV++ALGSA+ NKYSEG PG RYYGGNEFID++E LC+ RAL+ F LDP +WGVNVQP SGSPANFA YTA++  + RIMGLDLP GGHLTHG++T   K     +F F+SL
Sbjct:   52 VEKVDPEVFDIMKNEKKRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGARYYGGNEFIDQMELLCQKRALEVFGLDPAKWGVNVQPLSGSPANFAVYTAIVGSNGRIMGLDLPDGGHLTHGFFTPARKVSATSEF-FQSL 196          

HSP 2 Score: 23.8682 bits (50), Expect = 7.165e-51
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  568 GKLDYEKLEEKGLDFRAK 621
            G +DY+KLE+  + FR K
Sbjct:  205 GLIDYDKLEQNAMLFRPK 222          
The following BLAST results are available for this feature:
BLAST of EY675117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC2_DICDI9.492e-5470.07Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYM_BOVIN4.039e-5368.00Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_RABIT5.275e-5359.89Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_HUMAN6.890e-5367.33Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC1_DICDI2.618e-5270.29Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]
GLYC_MOUSE8.602e-5270.15Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]
GLYM_PEA1.299e-5162.18Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_FLAPR3.781e-5161.73Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYC_HUMAN4.219e-5169.40Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]
GLYC_CAEEL7.165e-5165.75Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-C11-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675117 ID=EY675117; Name=EY675117; organism=Citrus sinensis; type=EST; length=983bp
CCACGCGTCCGCATTTTCCCTTTTTTTCGTTTTCAGTGAATCCAGAAAAC
GGAAAAAAAGAAAAAATGGATCCAGTGAACGAGTGGGGCAACTCATCTCT
TGAAACCGTGGACCCAGAAATTCACGACCTGATCGAGAAAGAGAAGCGCC
GACAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCCTTC
GCCGTTATCGAAGCCCTCGGCAGCGCCCTCACCAACAAATACTCAGAGGG
AATGCCCGGCAACCGTTACTACGGAGGCAACGAATTCATCGACGAGATCG
AGAATCTCTGCCGGTCGAGAGCTTTACAAACTTTCCATTTGGACCCCACC
CAGTGGGGTGTCAACGTTCAGCCTTACTCCGGCTCGCCGGCCAACTTCGC
CGCTTACACGGCGGTGCTCGAGCCTCATGACCGTATCATGGGGCTGGACT
TGCCGTCCGGAGGGCATTTGACTCATGGGTATTACACTTCCGGCGGGAAA
AGATATCGGCGACTTCAATTTACTTTCAAGAGCTTGGCCCGTACAAGGGT
GAAATTTCGAATACTGGGGTAAATTGGATTACGAAAAATTGGAGGAAAAG
GGGTTGGATTTTAGGGCCAAAGTTAATCATTTGCGGGGGGGGAATGGGTA
ACCGAAGGGGACTGGGGAATTATGGCAAATTTCAAAACTGGGTAGAGAAA
AATTGGGGGGGCCCTTTTGCCCCTGGGGTAAGGCGCGCAAATACTGGGGC
CTGGGTGGGCGCAAGGGGACGCTGCGGAGCCCCTTTAAAAAGAGGGGACC
AAGTAGCCCCACAAACAAAATGAAAAAGAACAGGGAGGGGGTGCAAAAGG
GGGGAGGGGATAGAGTCTTGTATAACAAAAAAGAGAGAGCAACAACGCAC
GACAGAGGAGGGGGGGAGAGACGCGAAAGGGGGGAGGAGTGTGTGTGTGT
AATGGTATGAAGAGGAAGGAGGAGTTAACGGAA
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