EY675094

Overview
NameEY675094
Unique NameEY675094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1034
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675094_ssr318 microsatellite EY675094_ssr318:318..329. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY675094 vs. ExPASy Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 1.416e-50
Identity = 109/179 (60.89%), Postives = 129/179 (72.07%), Query Frame = 1
Query:   40 MAQAMASMAGLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVA--RSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 570
            MAQA+ SMAGLRG+S  QAVLEGS Q++G NRLN    SRV+V   R+G  +RAQQ  + PE+SRR++IGLVAAG+A GSFV+AV A+A PIKV            T NSD+ RD  L LK+RF+IQPLSP           K+I+NVK  IDKKAWPYVQNDLRLRASYLRYDLNT+I
Sbjct:    1 MAQAVTSMAGLRGAS--QAVLEGSLQINGSNRLNI---SRVSVGSQRTGLVIRAQQNVSVPESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVI 174          

HSP 2 Score: 25.409 bits (54), Expect = 1.416e-50
Identity = 13/40 (32.50%), Postives = 24/40 (60.00%), Query Frame = 2
Query:  578 KPKKKNNPSRNLTGKLFQNHRQS*PWRQKLKTPPEAKKIH 697
            KPK++    ++LT KLFQ    +  +  + K+ P+A+K +
Sbjct:  177 KPKEEKQSLKDLTAKLFQT-IDNLDYAARSKSSPDAEKYY 215          
BLAST of EY675094 vs. ExPASy Swiss-Prot
Match: PSBQ_SPIOL (Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea GN=PSBQ PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.702e-49
Identity = 109/178 (61.24%), Postives = 128/178 (71.91%), Query Frame = 1
Query:   40 MAQAMASMAGLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLP-LKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 570
            MAQAMASMAGLRG+S  QAVLEGS Q+SG NRL+ P+ SRVAV + G  +RAQQ S E ETSRRAM+G VAAG+ASGSFV+AVLA+A PI V            T NSD+ RD  LP  K+RF++QPL P            +ILNVK+ ID+KAWP +QNDLRLRASYLRYDL T+I
Sbjct:    1 MAQAMASMAGLRGAS--QAVLEGSLQISGSNRLSGPTTSRVAVPKMGLNIRAQQVSAEAETSRRAMLGFVAAGLASGSFVKAVLAEARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVI 176          
BLAST of EY675094 vs. ExPASy Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 2.228e-41
Identity = 104/175 (59.43%), Postives = 121/175 (69.14%), Query Frame = 1
Query:   52 MASMAGLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVA-RSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXX-TLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 570
            MASM GL G+S   AVLEGS +++G +RLN   + RVAVA RS   VRAQQ+    ETSRR++IGLVAAG+A GSFVQAVLADA  IKV             T NSD+ RD  L LK+RF++QPL P           KDI+NVK LID+KAWPYVQNDLR +ASYLRYDLNTII
Sbjct:    1 MASMGGLHGAS--PAVLEGSLKINGSSRLNG--SGRVAVAQRSRLVVRAQQSE---ETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168          
BLAST of EY675094 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSJ (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0544800 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.566e-36
Identity = 86/178 (48.31%), Postives = 110/178 (61.80%), Query Frame = 1
Query:   40 MAQAMASMAGLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADAT-PIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 570
            MAQAMASM GL          +G    +GP R  A   SR+AV      VRA  A+ + +T RRA++GLVA G+A G+  QA LA+A  PIK+            TLNSD+ RD DLPL+ERF++QPL P           +DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I
Sbjct:    1 MAQAMASMTGLS---------QGVQLPAGPRR--AGGRSRLAV------VRADAAAADVQTGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLRERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVI 161          

HSP 2 Score: 26.1794 bits (56), Expect = 2.566e-36
Identity = 15/40 (37.50%), Postives = 22/40 (55.00%), Query Frame = 2
Query:  578 KPKKKNNPSRNLTGKLFQNHRQS*PWRQKLKTPPEAKKIH 697
            KPK +    ++LTGKLF           K+K+P EA+K +
Sbjct:  164 KPKDEKKGLKDLTGKLFAT-IDGLDHAAKIKSPEEAEKYY 202          
BLAST of EY675094 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.566e-36
Identity = 86/178 (48.31%), Postives = 110/178 (61.80%), Query Frame = 1
Query:   40 MAQAMASMAGLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADAT-PIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 570
            MAQAMASM GL          +G    +GP R  A   SR+AV      VRA  A+ + +T RRA++GLVA G+A G+  QA LA+A  PIK+            TLNSD+ RD DLPL+ERF++QPL P           +DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I
Sbjct:    1 MAQAMASMTGLS---------QGVQLPAGPRR--AGGRSRLAV------VRADAAAADVQTGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLRERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVI 161          

HSP 2 Score: 26.1794 bits (56), Expect = 2.566e-36
Identity = 15/40 (37.50%), Postives = 22/40 (55.00%), Query Frame = 2
Query:  578 KPKKKNNPSRNLTGKLFQNHRQS*PWRQKLKTPPEAKKIH 697
            KPK +    ++LTGKLF           K+K+P EA+K +
Sbjct:  164 KPKDEKKGLKDLTGKLFAT-IDGLDHAAKIKSPEEAEKYY 202          
BLAST of EY675094 vs. ExPASy Swiss-Prot
Match: PSBQ_ONOVI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Onobrychis viciifolia GN=PSBQ PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.681e-36
Identity = 105/227 (46.26%), Postives = 128/227 (56.39%), Query Frame = 1
Query:   40 MAQAMASMAGLRGSSHSQAVLEGSSQL-SGPNRLNAPSNSRVAVARSGFTVRAQQ---------ASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIXXXXXXXXXXXXXPHGKALPKPSAILTLAAKIKNTP*SKK 690
            MAQAMAS            +LEGS QL SG NR  + S+SR       F VRAQQ         ++ +P+++RRAM+GLVA G+AS SFVQAVLA+A PIKV            TLNSDE RDL LPLKERF+IQPLSP           K+I+ VK+ ID+K      NDLRLRASYLRYDLNT+I                  L +    L  AAK+K+ P ++K
Sbjct:    1 MAQAMAS-----------GLLEGSLQLMSGSNR--SSSSSRTRGPAGVFIVRAQQQEQQQGMSSSAADPQSNRRAMLGLVATGLASASFVQAVLAEAKPIKVGGPPPPSGGLGGTLNSDEARDLKLPLKERFYIQPLSPTEAAQRQRESAKEIVAVKKFIDQKLGHMFINDLRLRASYLRYDLNTVISSKPKEQKQSLKESSAGKLFQDIDNLDYAAKLKSAPQAEK 214          
BLAST of EY675094 vs. ExPASy Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.233e-33
Identity = 101/219 (46.12%), Postives = 120/219 (54.79%), Query Frame = 1
Query:   40 MAQAMASMAGLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNE-PETSRRAMIGLVAAGVASGSFVQAVLADATP-IKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIXXXXXXXXXXXXXPHGKALPKPSAILTLAAKIKNTP*SKK 690
            MAQAMASM GL     SQ VL        P+R  A S +R AV      VRA    +   +  RRA+IGLVA G+  G+  QA  A+    IK+            TLNSD+ RD DLPLKERF++QPL P           +DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL T+I               GK L      L  AAKIK+TP ++K
Sbjct:    1 MAQAMASMTGL-----SQGVL--------PSR-RADSRTRTAVV----IVRASAEGDAVAQAGRRAVIGLVATGIVGGALSQAARAETVKTIKIGAPPPPSGGLPGTLNSDQARDFDLPLKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKELTGK-LFSTIDDLDHAAKIKSTPEAEK 200          
BLAST of EY675094 vs. ExPASy Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 4.080e-27
Identity = 89/218 (40.83%), Postives = 109/218 (50.00%), Query Frame = 1
Query:   40 MAQAMASMAGLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATP-IKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIXXXXXXXXXXXXXPHGKALPKPSAILTLAAKIKNTP*SKK 690
            MAQAMASM GL     SQ V   +          A S +R AV     +    + +  P   R      + A  +S    QAV A+    IK+            TLNSD+ RD DLPLKERF++QPL P           +DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL T+I               GK L      L  AAK+K+TP ++K
Sbjct:    1 MAQAMASMTGL-----SQGVCPAA----------ADSRTRTAVVVVRASAEGDRCAGGPRCDR------LVATASSPPLSQAVHAETVKTIKIGAPPPPSGGLPGTLNSDQTRDFDLPLKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKELTGK-LFSTIDDLDHAAKMKSTPEAEK 196          
The following BLAST results are available for this feature:
BLAST of EY675094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSBQ2_ARATH1.416e-5060.89Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
PSBQ_SPIOL1.702e-4961.24Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ1_ARATH2.228e-4159.43Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ_ORYSJ2.566e-3648.31Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ_ORYSI2.566e-3648.31Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ_ONOVI3.681e-3646.26Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ1_MAIZE2.233e-3346.12Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ2_MAIZE4.080e-2740.83Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-005-H12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675094 ID=EY675094; Name=EY675094; organism=Citrus sinensis; type=EST; length=1034bp
CCACGCGTCCGAAGTTTCTGATACCTGACCTATTGAAAAATGGCACAAGC
TATGGCGTCAATGGCTGGCTTACGTGGATCCTCCCACTCGCAGGCTGTTC
TTGAAGGTAGCTCCCAGCTCAGTGGCCCAAACCGCTTGAACGCCCCTAGC
AACAGCAGAGTTGCTGTGGCTCGCTCTGGTTTCACTGTTAGAGCCCAGCA
GGCATCAAACGAGCCTGAAACTAGCCGCCGTGCTATGATTGGTCTTGTTG
CTGCAGGTGTGGCCTCAGGTTCCTTTGTTCAAGCTGTACTTGCTGATGCC
ACTCCCATCAAAGTTGGTCCTCCTCCTCCACCCTCTGGCGGATTGCCTGG
AACGTTGAACTCTGATGAGCCAAGAGACCTGGATCTGCCACTGAAGGAGA
GGTTCTTCATCCAACCACTTAGTCCAGCCCAGGCGGCAGAGAGAGCAAAG
GCGTCAGCAAAGGATATTCTTAATGTCAAGGAATTAATAGACAAGAAGGC
CTGGCCCTATGTTCAGAATGATCTCCGTCTCAGGGCCTCATACCTTCGCT
ATGACCTCAACACTATCATTTCTGCTAAAGCCAAAAAAGAAAAACAATCC
CTCAAGAAACCTCACGGGAAAGCTCTTCCAAAACCATCGGCAATCCTGAC
CCTGGCGGCAAAAATTAAAAACACCCCCTGAAGCAAAAAAAATACATTGC
TGAAAACGGGTTCTACCCCCGGAAGGAAGTTTCCCTCCAGGGGTGGGTAA
ACAAAAATTAAAAAAAATCCGAGGGAAAAATAAATTTTTTCATTTTTGGG
GGAGGGCAAAACCTTTTGGGGGATTTTTTTATGGAAGGGGGGGGGGTTTC
CCCCCCTCAAATAATCGGAAAAAAAAATTTTGTTCCAAAAAAAAAAAAAA
AAAAAAGGGGGGGGGGCCCGCCCCATAAAAAGGAACACAACACCTTAAAA
AACCTCGCCGGGGGGGCGGGGCAAAACCCACAAATAACCCTCTTCTCCTA
AATGAGAGGGGCGCCCCCCCCAAAAACAAATATA
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