EY675087

Overview
NameEY675087
Unique NameEY675087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1059
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675087 vs. ExPASy Swiss-Prot
Match: YTCB_PSESQ (UPF0065 protein in tcbD-tcbE intergenic region OS=Pseudomonas sp. (strain P51) PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 9.761e-16
Identity = 45/125 (36.00%), Postives = 72/125 (57.60%), Query Frame = 2
Query:   32 DVSSGAVTFMLYQMTAAXXXXXXXXXXXXAVTTKDRISLAPDVPTMQEA-GVPGFQMASWQAVYAPKGTPKPILDKLAAEIALILKEPDVQEKLGKTMGMELVGSTPDELRALMATEIPRWAEVV 403
            D+ +G V  M+  +T+              VT+ DR    P+VPT+ EA G+PGF++ +W  V+APKGTP+ ++++L AEI   +  PDV E L K +G++  G  P+ L  L  +E  RW +++
Sbjct:  204 DLVAGRVDMMIDSVTSQRQNILAKRVRALGVTSLDRHPQLPEVPTIAEAAGLPGFEVLTWCGVFAPKGTPRSVVERLNAEINKAIAAPDVVEAL-KQLGIKTAGGAPEVLADLFKSETERWQKLI 327          
BLAST of EY675087 vs. ExPASy Swiss-Prot
Match: YTUY_AGRVI (UPF0065 protein in the TAR-I ttuE-ttuC' intergenic region OS=Agrobacterium vitis PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 9.136e-14
Identity = 46/136 (33.82%), Postives = 71/136 (52.21%), Query Frame = 2
Query:   14 GPDSRVDVSSGAVTFMLYQMTAAXXXXXXXXXXXXAVTTKDRISLAPDVPTMQEAGVPGFQMASWQAVYAPKGTPKPILDKLAAEIALILKEPDVQEKLGK--TMGMELVGSTPDELRALMATEIPRWAEVVKKSG 415
            GP +  D+  G +     Q T              AVTTK RI + PDVPT+ E G+  F++++W A++APK TP PI +KL+  +   LK+P V E+     T+ +    +TP  L      E+ R A+V+ ++G
Sbjct:  211 GP-AMTDLIGGRIDLACDQTTNTTTQIKANEVHAYAVTTKARIDVLPDVPTVDEGGLKDFELSAWHALWAPKDTPAPIREKLSEALKTALKDPMVIERFASLGTVPVAQDMATPAALDQKFKAEVERLAKVISEAG 345          
BLAST of EY675087 vs. ExPASy Swiss-Prot
Match: BUGT_BORPE (Protein bugT OS=Bordetella pertussis GN=bugT PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.939e-12
Identity = 48/133 (36.09%), Postives = 64/133 (48.12%), Query Frame = 2
Query:   29 VDVSSGAVTFMLYQMTAAXXXXXXXXXXXXAVTTKDRISLAPDVPTMQEAGVPGFQMASWQAVYAPKGTPKPILDKLAAEIALILKEPDVQEKLGKTMGMELVGSTPDELRALMATEIPRWAEVVKKSGATVE 427
            VD+  G V   +  M A             A+ + DR +  P VPTM E G P F  + W AV APKGT   I+  L   I   L+   V E      G   V +TPD+ R  +A EI RWA VV+++GA ++
Sbjct:  195 VDLLGGVVAADIENMPAVLEHIRSGNLRALAILSSDRSTHFPAVPTMAELGYPEFVASPWFAVMAPKGTDPKIIVLLNRHINEALQSKAVVEAFA-AQGATPVIATPDQTRGFIADEIQRWAGVVRETGAKLK 326          
The following BLAST results are available for this feature:
BLAST of EY675087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
YTCB_PSESQ9.761e-1636.00UPF0065 protein in tcbD-tcbE intergenic region OS=... [more]
YTUY_AGRVI9.136e-1433.82UPF0065 protein in the TAR-I ttuE-ttuC' intergenic... [more]
BUGT_BORPE2.939e-1236.09Protein bugT OS=Bordetella pertussis GN=bugT PE=3 ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-005-H04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675087 ID=EY675087; Name=EY675087; organism=Citrus sinensis; type=EST; length=1059bp
GCATCTGCAGTACGGTCCGGATTCCCGGGTCGACGTGTCCTCGGGCGCGG
TGACGTTCATGCTCTACCAGATGACCGCCGCCTTGCCGCTGCTGCAGACC
GGCAAGCTCAAGCTGCTGGCCGTCACCACCAAGGACCGCATCTCGCTGGC
CCCCGACGTGCCCACCATGCAGGAGGCCGGCGTGCCCGGCTTCCAGATGG
CCTCGTGGCAGGCGGTGTATGCGCCCAAGGGCACGCCCAAGCCCATCCTC
GACAAGCTCGCCGCCGAGATCGCGCTGATCCTGAAGGAACCCGACGTGCA
GGAAAAGCTCGGCAAGACCATGGGCATGGAACTGGTCGGCAGCACCCCCG
ACGAACTGCGCGCCCTGATGGCCACGGAGATTCCGCGCTGGGCGGAGGTG
GTGAAGAAGTCGGGGGCGACGGTGGAGTGATGGCTGCCAATGGGCGCAAG
CCTACGCCCCATCATGTAAGACCTGATTCCCGCCCCGGCCTGGAGCCGGG
GCTTTTGTTTTCCGCGCCCGGATTCGCCGCGTCAGGGTTTCAGGTTCAGC
TTCNGCACCAACGCATTGAAGGCCTGTTCCTGCCGCGCCACGTCGGCCGC
GATTTGCGGTTGGTCGGCGTATGACGGCGTCAGGTTCTGCTTGCGCATCA
GCGCCTGGAAGTCCTGCCAACGCCCCACCTGGCGCGCGGCGGCCCGCCAT
TTTTCAATGGCGCCGGCGGGGCCCAATTTCGGCAGGGCAAATCCCCCCCC
AAAACCTTAAATCCCAGGGTCGCCCCCCCTTTCTTTTTAGGTCCGACAGT
ACCGGGGAGGGGTTTCAAGCCCCCTTCCGGCCCCCCTCCCCGGGCCAAGG
GGGCCCCCCCTTTGGCGGGGTTTTCCCCCTCGATTGTTACACAAACAAAA
ATTTAAGGCCCCCAAAAAGGAAGAGAGAAAGGAGGGGGGGCCCCCCAGGA
CAAAAAGGGGAGCACTAAATTGTCTAGGGGGGGGGGGTGTGATTACGCGG
GAGAAAGAAGGGAGAACTTCTCTTTCTTACTAAATAAATTGTTTATTACA
CCCCNCTAA
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