EY675079

Overview
NameEY675079
Unique NameEY675079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675079_ssr597 microsatellite EY675079_ssr597:597..606. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7554 contig Csv1_Contig7554:442..1103. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY675079 vs. ExPASy Swiss-Prot
Match: HTH_ARATH (Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.395e-49
Identity = 102/190 (53.68%), Postives = 124/190 (65.26%), Query Frame = 1
Query:    1 PEAIADAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXY-ESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 567
            PEA    I   K     AF G FILEK+  P+S GHL L   N +DNPSVTFNYFK P DLQRCV+                    +  +V  +++++  A +NL P+  N + S+ QFC+DTV+TIWHYHGGC VGKVV  + KVLGVD LRVIDGSTF  SPGTNPQAT+MM+GRYMGV+IL ERL +
Sbjct:  401 PEATQAYITRNKYQLHEAFNGSFILEKLAYPISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRLVSKVVTSNRFLNYTQCDKQNVHKMLSLSVKANINLRPKQLNDTKSMAQFCKDTVVTIWHYHGGCLVGKVVSPNRKVLGVDRLRVIDGSTFDESPGTNPQATMMMMGRYMGVKILRERLGN 590          
BLAST of EY675079 vs. ExPASy Swiss-Prot
Match: MDL1_PRUSE ((R)-mandelonitrile lyase 1 OS=Prunus serotina GN=MDL1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.724e-31
Identity = 70/165 (42.42%), Postives = 96/165 (58.18%), Query Frame = 1
Query:   79 KVMGPVSTGHLELRTR-NPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 570
            KV GP+S G L L++  N   +P+V FNY+  P DL  CV G                  E +      N+        LP+      + E FCR++V + WHYHGGC VGKV+D D++V G+DALRV+DGSTF Y+P ++PQ   +MLGRY+G++IL ER AS+
Sbjct:  388 KVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNPTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGIEGFNILGIP----LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGIDALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 548          
BLAST of EY675079 vs. ExPASy Swiss-Prot
Match: MDL4_PRUSE ((R)-mandelonitrile lyase 4 OS=Prunus serotina GN=MDL4 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.784e-28
Identity = 67/167 (40.12%), Postives = 96/167 (57.49%), Query Frame = 1
Query:   70 ILEKVMGPVSTGHLELRTR-NPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 567
            I+ KV GP+S G L L++  N +  P+V FNY  +P DL  CV G                  + +      N+  +     LP +     + E+FCRDTV + WHYHGG  VGKV+D +++V G++ALRV+DGSTF  +P ++PQ   +MLGRY+G +I+ ER AS
Sbjct:  387 IVSKVPGPLSAGSLTLQSSSNVSVAPNVKFNYCSDPVDLTHCVSGMKKIGVFLSTDALKPYKVDDLPGIDGFNILGTP----LPENQTDDAAFEKFCRDTVASYWHYHGGAIVGKVIDGNFRVTGINALRVVDGSTFPATPASHPQGFYLMLGRYVGTKIVQERSAS 549          
BLAST of EY675079 vs. ExPASy Swiss-Prot
Match: MDL2_PRUSE ((R)-mandelonitrile lyase 2 OS=Prunus serotina GN=MDL2 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.784e-28
Identity = 70/168 (41.67%), Postives = 96/168 (57.14%), Query Frame = 1
Query:   70 ILEKVMGPVSTGHLELR-TRNPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNM-TASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 567
            I+ KV GP+S G + L+ T +    P+VTFNY+    DL  CV G                 Y+   +P +        P   LP +     + E FCR+ V + WHYHGGC VG+V+D D++V G++ALRV+DGSTF  +P ++PQ   +MLGRYMG +IL ERLAS
Sbjct:  387 IVNKVPGPLSHGTVLLQSTSDVRVAPNVTFNYYSNTTDLAHCVSG--MKKIGEFLSSDALKPYKVEDLPGIEGFDILGIP---LPENQTDDAAFETFCREAVASYWHYHGGCLVGEVLDDDFRVTGINALRVVDGSTFPSTPASHPQGFYLMLGRYMGTKILQERLAS 549          
BLAST of EY675079 vs. ExPASy Swiss-Prot
Match: MDL3_PRUSE ((R)-mandelonitrile lyase 3 OS=Prunus serotina GN=MDL3 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.973e-27
Identity = 66/167 (39.52%), Postives = 92/167 (55.09%), Query Frame = 1
Query:   70 ILEKVMGPVSTGHLELRTRNP-NDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 567
            I+ KV GP+S G + L + +     P+V FNY+    DL  CV G                  E +      N+        LP +     + E FCR++V + WHYHGGC VGKV+D  ++V G++ALRV+DGSTF  +P ++PQ   +MLGRYMG++IL ER AS
Sbjct:  386 IVNKVPGPLSHGTVTLNSSSDVRVGPNVKFNYYSNLTDLSHCVSGMKKLGEVLSTDALEPYKVEDLPGIDGFNILGIP----LPENQTDDAAFETFCRESVASYWHYHGGCLVGKVLDDGFRVTGINALRVVDGSTFPSTPASHPQGFYLMLGRYMGIQILQERSAS 548          
BLAST of EY675079 vs. ExPASy Swiss-Prot
Match: MDL1_PRUDU ((R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.940e-24
Identity = 62/165 (37.58%), Postives = 88/165 (53.33%), Query Frame = 1
Query:   70 ILEKVMGPVSTGHLELRTRNP-NDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNMT-ASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 558
            I+ +V GP+S G + L + +     P++ FNY+    DL  CV G                 Y++  V  +        P   LP +     S E FC D V + WHYHGG  VGKV+D  ++V+G+ ALRV+D STF Y P ++PQ   +MLGRY+G++IL ER
Sbjct:  386 IVSQVPGPLSHGSVTLNSSSDVRIAPNIKFNYYSNSTDLANCVSG--MKKLGDLLRTKALEPYKARDVLGIDGFNYLGVP---LPENQTDDASFETFCLDNVASYWHYHGGSLVGKVLDDSFRVMGIKALRVVDASTFPYEPNSHPQGFYLMLGRYVGLQILQER 545          
The following BLAST results are available for this feature:
BLAST of EY675079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
HTH_ARATH2.395e-4953.68Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=... [more]
MDL1_PRUSE1.724e-3142.42(R)-mandelonitrile lyase 1 OS=Prunus serotina GN=M... [more]
MDL4_PRUSE1.784e-2840.12(R)-mandelonitrile lyase 4 OS=Prunus serotina GN=M... [more]
MDL2_PRUSE1.784e-2841.67(R)-mandelonitrile lyase 2 OS=Prunus serotina GN=M... [more]
MDL3_PRUSE1.973e-2739.52(R)-mandelonitrile lyase 3 OS=Prunus serotina GN=M... [more]
MDL1_PRUDU5.940e-2437.58(R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-005-G04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675079 ID=EY675079; Name=EY675079; organism=Citrus sinensis; type=EST; length=662bp
CCAGAGGCTATAGCCGACGCAATTGAAAACATGAAAGCACTTGATGATCC
AGCTTTCAGAGGCGGATTCATTCTCGAAAAGGTTATGGGCCCAGTATCCA
CGGGACATTTGGAGCTCCGAACCCGAAACCCGAACGATAACCCGTCCGTC
ACGTTCAATTACTTCAAGGAACCTGAAGACTTACAAAGATGTGTACAGGG
CATTTCAACCATAGAGAAAATAATTGAATCAAAATCTTTTTCTAAGTTTA
AATACGAGAGTATGTCAGTGCCAATACTGGTAAACATGACTGCCAGTGCC
CCGGTCAATTTGCTGCCCAGACACAGCAATGCATCAACATCACTGGAACA
ATTTTGCAGGGACACAGTGATGACCATATGGCATTATCATGGAGGTTGCC
AAGTTGGTAAGGTTGTTGATCATGATTATAAGGTTCTTGGGGTCGATGCA
TTGAGGGTCATCGACGGATCCACGTTTTATTACTCCCCGGGGACTAATCC
GCAAGCAACGGTCATGATGCTTGGAAGGTACATGGGAGTCAGGATTCTGA
GTGAGAGACTTGCAAGTAACGGTTCAAAGTAATGTCAATCATCATCATAT
ATATATGTTTATTTGGATTTTTTTTTTTTCGTGATTTGAAATTTTAAAAA
AAAAAAAAAGGG
back to top