EY675074

Overview
NameEY675074
Unique NameEY675074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length994
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675074 vs. ExPASy Swiss-Prot
Match: RIR1_ARATH (Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana GN=RNR1 PE=1 SV=1)

HSP 1 Score: 365.155 bits (936), Expect = 3.436e-100
Identity = 187/238 (78.57%), Postives = 199/238 (83.61%), Query Frame = 1
Query:    1 RIVGSTGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHHLTEMGYLVSYY*KTK*NTMMGLFKKSQNSLKKLKRKTKTVWE 714
            ++ GS  SKNR+FDFEKLAEVTA VT NLNKIIDVNYYPVETA+ SN+RHRPIGIGVQGLAD FILLGM F+SPEAQQLNKDIFETIYYHALK S+E+AA+ GPYETY  SPVSKGILQPDMWNVIPSDRWDW VLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLH LT+MG L +   K K     G           LK   +TVWE
Sbjct:  468 KLAGSLDSKNRYFDFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVSKGILQPDMWNVIPSDRWDWAVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTDMG-LWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWE 704          
BLAST of EY675074 vs. ExPASy Swiss-Prot
Match: RIR1_MOUSE (Ribonucleoside-diphosphate reductase large subunit OS=Mus musculus GN=Rrm1 PE=1 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 3.460e-76
Identity = 147/230 (63.91%), Postives = 169/230 (73.48%), Query Frame = 1
Query:   37 FDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHHLTEMGYLVSYY*KTK*NTMMGLFKKSQNSLKKLKRKTKTVWENPSK 726
            +DFEKLAEVT ++  NLNKIID+NYYP+  A  SN RHRPIGIGVQGLAD FIL+   FESPEAQ LNK IFETIYY AL+ S E+A + GPYETY  SPVSKGILQ DMWNV P+D WDW  L++ I+K G+RNSLL+APMPTAST+QILGNNE  EPYTSNIY+RRVLSGEF +VN HLL  LTE G L +   K +     G  +        LK+  KTVWE   K
Sbjct:  461 YDFEKLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWNVAPTDLWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERG-LWNKEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQK 689          
BLAST of EY675074 vs. ExPASy Swiss-Prot
Match: RIR1_HUMAN (Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens GN=RRM1 PE=1 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.929e-75
Identity = 147/230 (63.91%), Postives = 169/230 (73.48%), Query Frame = 1
Query:   37 FDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHHLTEMGYLVSYY*KTK*NTMMGLFKKSQNSLKKLKRKTKTVWENPSK 726
            +DF+KLAEVT +V  NLNKIID+NYYPV  A  SN RHRPIGIGVQGLAD FIL+   FES EAQ LNK IFETIYY AL+ S ++A ++GPYETY  SPVSKGILQ DMWNV P+D WDW VL++ I+K G+RNSLL+APMPTAST+QILGNNE  EPYTSNIY+RRVLSGEF +VN HLL  LTE G L     K +     G  +        LK+  KTVWE   K
Sbjct:  461 YDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERG-LWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQK 689          
BLAST of EY675074 vs. ExPASy Swiss-Prot
Match: RIR1_PONAB (Ribonucleoside-diphosphate reductase large subunit OS=Pongo abelii GN=RRM1 PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 6.526e-75
Identity = 146/230 (63.48%), Postives = 169/230 (73.48%), Query Frame = 1
Query:   37 FDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHHLTEMGYLVSYY*KTK*NTMMGLFKKSQNSLKKLKRKTKTVWENPSK 726
            +DF+KLAEVT +V  NLNKIID+NYYPV  A  SN RHRPIGIGVQGLAD FIL+   FES EAQ LNK IFETIYY AL+ S ++A ++GPYETY  SPVSKGILQ DMWNV P+D WDW +L++ I+K G+RNSLL+APMPTAST+QILGNNE  EPYTSNIY+RRVLSGEF +VN HLL  LTE G L     K +     G  +        LK+  KTVWE   K
Sbjct:  461 YDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERG-LWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQK 689          
BLAST of EY675074 vs. ExPASy Swiss-Prot
Match: RIR1_DANRE (Ribonucleoside-diphosphate reductase large subunit OS=Danio rerio GN=rrm1 PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 6.108e-73
Identity = 143/235 (60.85%), Postives = 167/235 (71.06%), Query Frame = 1
Query:   22 SKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHHLTEMGYLVSYY*KTK*NTMMGLFKKSQNSLKKLKRKTKTVWENPSK 726
            +  R FDF+KLA VT ++ +NLNKIID+NYYPV+ A  SN RHRPIGIGVQGLAD FIL+   FES EAQ LN  IFETIYY AL++S E+AA+ GPY+TY   PVSKGILQ DMW   P+D WDW  L++ I+ +GVRNSLL+APMPTAST+QILGNNE  EPYTSNIY RRVLSGEF +VN HLL  LTE G L +   K +     G  +        LK   KTVWE   K
Sbjct:  456 TSERTFDFQKLASVTKVIVKNLNKIIDINYYPVKEAENSNKRHRPIGIGVQGLADAFILMRFPFESTEAQLLNTQIFETIYYAALESSCELAAEYGPYQTYAGCPVSKGILQYDMWEKTPTDLWDWAALKEKIANDGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYHRRVLSGEFQIVNPHLLKDLTERG-LWNEEMKNQIIAQNGSIQTIPAIPDDLKELYKTVWEISQK 689          
BLAST of EY675074 vs. ExPASy Swiss-Prot
Match: RIR1_DROME (Ribonucleoside-diphosphate reductase large subunit OS=Drosophila melanogaster GN=RnrL PE=1 SV=2)

HSP 1 Score: 272.322 bits (695), Expect = 3.031e-72
Identity = 138/226 (61.06%), Postives = 169/226 (74.78%), Query Frame = 1
Query:   37 FDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHHLTEMGYLVSYY*KTK*NTMMGLFKKSQNSLKKLKRKTKTVWE 714
            +DF+KL EVT IVT+NLNKIID+NYYP+  AR+SNLRHRP+GIG+QG AD  IL+   +ES EA  LN+ IFETIYY AL+ S E+A  EGPYETY  SPVSKGILQ DMW+ +P++ WDW  L++ I  +GVRNSLLVAPMPTAST+QI+GNNE FEPYT+NIY+RRVLSGEF VVN HLL  LTE+  L     K +  +  G  +  +    K++   KTVWE
Sbjct:  472 YDFKKLKEVTKIVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYESEEAGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVPTNLWDWQKLKESIRMHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHLLRDLTELD-LWDDDMKNQIISSRGSIQNIETIPPKVRDLYKTVWE 696          
BLAST of EY675074 vs. ExPASy Swiss-Prot
Match: RIR1_CAEEL (Ribonucleoside-diphosphate reductase large subunit OS=Caenorhabditis elegans GN=rnr-1 PE=1 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.504e-71
Identity = 139/230 (60.43%), Postives = 162/230 (70.43%), Query Frame = 1
Query:   37 FDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHHLTEMGYLVSYY*KTK*NTMMGLFKKSQNSLKKLKRKTKTVWENPSK 726
            FDF KLAEVT ++T NLNKIIDVNYYPVE AR SN+RHRPIG+GVQGLAD F+L+   F S EA+ LNK IFETIYY AL+ S E+A   GPY TY  SPVSKG LQ DMW V P+D+ DW  LR  I+K+G+RNSLL+APMPTAST+QILGNNE  EPYTSNIYSRRVLSG+F +VN H+L  L E G       K +     G  +        +K   +TVWE   K
Sbjct:  467 FDFVKLAEVTKVITRNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSAEARDLNKRIFETIYYAALEASCELAELNGPYSTYEGSPVSKGQLQFDMWGVTPTDQCDWATLRKKIAKHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPHMLKDLVERGLWTDEM-KNRLIANNGSIQNIDGIPSDIKELYRTVWEISQK 695          
BLAST of EY675074 vs. ExPASy Swiss-Prot
Match: RIR1_NEUCR (Ribonucleoside-diphosphate reductase large chain OS=Neurospora crassa GN=rnr-1 PE=1 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 3.352e-71
Identity = 139/230 (60.43%), Postives = 166/230 (72.17%), Query Frame = 1
Query:   25 KNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHHLTEMGYLVSYY*KTK*NTMMGLFKKSQNSLKKLKRKTKTVWE 714
            +N  +DF+KL EVT +V  NLNKIID+N+YPV+ A  SN+RHRPIG+GVQGLAD F+ L M F+S  A +LN  IFETIY+ AL  S ++A ++GPY TY  SPVS+GILQ DMWNV P++ WDW  L+  I K GVRNSLL+APMPTASTSQILGNNECFEPYTSNIY RRVL+GEF VVN  LL  L EMG L S   K +     G  +  Q+    +K   KTVWE
Sbjct:  458 ENASYDFKKLHEVTQVVVRNLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSDAASKLNIQIFETIYHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTPTNLWDWTALKADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLRDLVEMG-LWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWE 686          
BLAST of EY675074 vs. ExPASy Swiss-Prot
Match: RIR1_VARV (Ribonucleoside-diphosphate reductase large subunit OS=Variola virus GN=I4L PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 7.467e-71
Identity = 142/231 (61.47%), Postives = 166/231 (71.86%), Query Frame = 1
Query:   37 FDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHHLTEMGYLVSYY*KTK*NTMM-GLFKKSQNSLKKLKRKTKTVWENPSK 726
            FDF KL +V  ++  NLNKIID+NYYP+  A  SN RHRPIGIGVQGLAD FILL   F+S EAQ LNK IFETIYY AL+ S E+A KEGPY+TY  S  S GILQ D+WNV+PSD W+W  L+D I   G+RNSLLVAPMPTAST+QILGNNE  EPYTSNIY+RRVLSGEF VVN HLL  LTE      +  + K   M+ G   ++ N  + +KR  KT+WE P K
Sbjct:  460 FDFLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKL---WNDEIKNRIMVDGGSIQNTNLPEDIKRVYKTIWEIPQK 687          
BLAST of EY675074 vs. ExPASy Swiss-Prot
Match: RIR1_VACCW (Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia virus (strain Western Reserve) GN=VACWR073 PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 1.274e-70
Identity = 142/232 (61.21%), Postives = 165/232 (71.12%), Query Frame = 1
Query:   37 FDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHHLTEMGYLVSYY*KTK*NTMM--GLFKKSQNSLKKLKRKTKTVWENPSK 726
            FDF KL +V  ++  NLNKIID+NYYP+  A  SN RHRPIGIGVQGLAD FILL   F+S EAQ LNK IFETIYY AL+ S E+A KEGPY+TY  S  S GILQ D+WNV+PSD W+W  L+D I   G+RNSLLVAPMPTAST+QILGNNE  EPYTSNIY+RRVLSGEF VVN HLL  LTE       +     N +M  G   ++ N  + +KR  KT+WE P K
Sbjct:  460 FDFLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTER----KLWNDEIKNRIMADGGSIQNTNLPEDIKRVYKTIWEIPQK 687          
The following BLAST results are available for this feature:
BLAST of EY675074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RIR1_ARATH3.436e-10078.57Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_MOUSE3.460e-7663.91Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_HUMAN2.929e-7563.91Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_PONAB6.526e-7563.48Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_DANRE6.108e-7360.85Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_DROME3.031e-7261.06Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_CAEEL1.504e-7160.43Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_NEUCR3.352e-7160.43Ribonucleoside-diphosphate reductase large chain O... [more]
RIR1_VARV7.467e-7161.47Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_VACCW1.274e-7061.21Ribonucleoside-diphosphate reductase large subunit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-005-F08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675074 ID=EY675074; Name=EY675074; organism=Citrus sinensis; type=EST; length=994bp
AGGATTGTTGGGAGCACAGGTTCTAAAAATAGATTTTTTGACTTTGAAAA
ATTAGCTGAGGTTACTGCAATTGTTACTGAAAACCTTAACAAAATAATTG
ATGTTAATTACTACCCTGTTGAAACTGCCAGAAGGTCAAATTTGCGACAT
AGACCCATCGGTATTGGAGTTCAGGGTCTAGCAGATACCTTCATCTTACT
TGGAATGGCATTTGAATCACCAGAGGCTCAACAGCTGAACAAAGACATAT
TTGAAACCATTTACTACCATGCTCTGAAAACTTCTTCGGAGATAGCTGCA
AAAGAAGGTCCTTATGAAACATATCATAATAGCCCTGTGAGCAAGGGAAT
TCTCCAACCCGACATGTGGAATGTAATTCCATCAGATCGATGGGACTGGG
GAGTACTTAGAGATATGATATCAAAGAATGGAGTGAGAAATTCACTTCTT
GTAGCACCAATGCCAACTGCCTCGACCAGCCAGATTCTCGGAAACAATGA
GTGCTTTGAGCCATATACTTCTAACATCTACAGTCGCAGAGTTCTAAGTG
GTGAATTTGTTGTAGTGAACAAACATCTTCTTCACCACTTAACTGAGATG
GGGTATTTGGTCTCCTACTATTAAAAAACAAAATAAAATACGATGATGGG
TCTGTTCAAAAAATCCCAAAATTCCCTGAAGAAATTAAAAAGAAAAACAA
AAACTGTTTGGGAAAATCCAAGCAAAAAACCCTGGGTGATAAGGGCTGGT
TGATAAAAGGGGGGTTATTAAAAACCAAAATCCAAAACCCTATATATTCC
CCCTGGGTTTCAACCCAAATTTTTAAAAAAAGGGGACTTTTCTTTTCCTT
TTTCCCCAAAACGGGGGGTCAAAGGGGGGAAAATAAAAAAAAAAGGAAAA
AAGAGGACACATTACTCCCCCCGGGGCCCCCACGGGGCCTCTGCGCGCGC
TCGAAAGAGGCGCCCCCCCCCCAAAAAATTTTTTTTTAATGAGT
back to top